Introduction

For those that are identified as copyright protected, a copy is available at the Sites Project Authority Office in Maxwell for review by the public. Please contact info@sitesprojecstg.wpenginepowered.com to arrange a time to view the document.

Volume 1

Executive Summary

There are not in-text citations or references for this chapter.

Chapter 1

Bureau of Reclamation. 2020. North-of-the-Delta Offstream Storage Investigation Feasibility Report. July. Available: https://www.usbr.gov/mp/nodos/docs/final-fr/main-body-es-sites-feasibility-report-508-1-28-21.pdf</a >.

CALFED. 2000. CALFED Bay-Delta Programmatic Record of Decision. August. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/exhibit4/docs/Public_Draft_BDCP_EIR-EIS_Appendix_3A_-_Attachment_1.sflb.pdf</a >.

California Natural Resources Agency, California Environmental Protection Agency, and California Department of Food and Agriculture. 2020. 2020 Water Resilience Portfolio 0 in Response to the Executive Order N-10-19. July. Available: https://waterresilience.ca.gov/wp-content/uploads/2020/07/Final_California-Water-Resilience-Portfolio-2020_ADA3_v2_ay11-opt.pdf</a >.

Sites Project Authority. 2020. Value Planning Report. April. Available: https://sitesproject.org/wp-content/uploads/2020/04/INT-REP-Value-Planning-Appraisal-Report-FinalV2Compressed.pdf</a >.

Sites Project Authority and Bureau of Reclamation. 2017. Sites Reservoir Project Draft Environmental Impact Report/Environmental Impact Statement. August 2017. Available: https://sitesproject.org/environmental-review/draft-environmental-impact-report-environmental-impact-statement/

Chapter 2

Bureau of Reclamation and California Department of Water Resources. 2006. North-of-the-Delta Offstream Storage Investigation: Initial Alternatives Information Report. May. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/_Ch02_AlternativesDescription/Bureau%20of%20Reclamation%20and%20California%20DWR_2006_N</a >

California Department of Fish and Wildlife. 2020. Incidental Take Permit for Long-term Operations of the State Water Project in the Sacramento-San Joaquin Delta (2081-20129-066-00). March. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/_Ch02_AlternativesDescription/CDFW%202020.%20Incidental%20Take%20Permit%20for%20Long-Te</a >

California Water Commission. 2021. Proposition 1 Water Storage Investment Program: Funding the Public Benefits of Water Storage Projects. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch02_Proj_Descript/CWC_2021_DeterminationsofEligability.pdf</a >

Michel, C. J., A. J. Ammann, S. T. Lindley, P. T. Sandstrom, E. D. Chapman, M. J. Thomas, G. P. Singer, A. P. Klimley, and R. B. MacFarlane. 2015. Chinook Salmon Outmigration Survival in Wet and Dry Years in California’s Sacramento River. Canadian Journal of Fisheries and Aquatic Sciences 72(11):1749–1759. https://esajournals.onlinelibrary.wiley.com/doi/10.1002/ecs2.3498</a >

Michel, C. J., J. J. Notch, F. Cordoleani, and E. M. Danner. 2021. Nonlinear Survival of Imperiled Fish Informs Managed Flows in a Highly Modified River. Ecosphere 12(5):e03498. doi: 10.1002/ecs2.3498. Copyright protected. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/_Ch02_AlternativesDescription/Michel_etal_2015_Chinook%20salmon%20outmigration%20surviv</a >

National Marine Fisheries Service. 2018. NOAA Fisheries West Coast Region Anadromous Salmonid Passage Design Guidelines. NOAA Technical Memorandum NMFS-NWFSC1xx, PEER REVIEW DRAFT: August 16, 2018. National Marine Fisheries Service, West Coast Region, Oregon & Washington Coastal Office, Environmental Services Branch, California Coastal Office, Environmental Services Branch. 183 pp. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/_Ch02_AlternativesDescription/NMFS%20Tech%20Memo%20Fish%20Passage%20Guidelines_Draft_20</a >

National Marine Fisheries Service. 2019. Biological Opinion on Long-term Operations of the CVP and SWP. October. https://repository.library.noaa.gov/view/noaa/22046

Notch, J. 2017. Out-Migration Survival of Wild Chinook Salmon (Oncorhynchus tshawytscha) Smolts from Mill Creek through the Sacramento River during Drought Conditions. Master’s Thesis. University of California, Santa Cruz. https://escholarship.org/uc/item/7bd097f3

Poytress, W. R., J. J. Gruber, F. D. Carrillo, and S. D. Voss. 2014. Compendium Report of Red Bluff Diversion Dam Rotary Trap Juvenile Anadromous Fish Production Indices for Years 2002–2012. U.S. Fish and Wildlife Service. Red Bluff Fish and Wildlife Office, CA. 151 pp. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1133%20Poytress%20et%20al.%202014.%20Juvenile%20Anadromous%20Fish%20Monitoring%20Compendium%20Report%20(2002-2012).pdf</a >

Sites Project Authority. 2020. Sites Project Value Planning Alternatives Appraisal Report. April. https://sitesproject.org/wp-content/uploads/2020/04/INT-REP-Value-Planning-Appraisal-Report-FinalV2Compressed.pdf

Sites Project Authority. 2022a. Sites Project Authority Application to Appropriate Water and Petition for Partial Assignment and Release from Priority. May 10. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch02_Proj_Descript/Sites%20Project%20Authority_2022_Water%20Rights%20Application%20Submittal.pdf</a >

Sites Project Authority. 2022b. 2023–2024 Proposed Sites Reservoir Test Pits, Fault Studies and Quarry Studies: Final Initial Study/Mitigated Negative Declaration. December. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch02_Proj_Descript/Sites%20Project%20Authority_2022_2023-2024%20Proposed%20Test%20Pits_Final%20IS.pdf</a >

Sites Project Authority. 2023. Participating Entities. Available: https://sitesproject.org/participants/</a >.

Sites Project Authority and Bureau of Reclamation. 2022. 2022–2024 Sites Reservoir Geologic, Geophysical, and Geotechnical Investigations: Final Environmental Assessment/Initial Study. July. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch02_Proj_Descript/Sites%20Project%20Authority%20and%20Reclamation_2022_2022-2024%20Geo%20Investigations_Final%20IS.pdf</a >

State Water Resources Control Board. 2000. Revised Water Right Decision 1641. March. https://www.waterboards.ca.gov/waterrights/board_decisions/adopted_orders/decisions/d1600_d1649/wrd1641_1999dec29.pdf

U.S. Fish and Wildlife Service. 2019. Biological Opinion for the Reinitiation of Consultation on the Coordinated Operations of the CVP and SWP. Service File No. 08FBTD00-2019-F0164. October Available: https://sitesreservoirproject.riptideweb.com/references/REF21/_Ch02_AlternativesDescription/USFWS_2019.pdf

Chapter 3

Bureau of Reclamation. 2020. Record of Decision: Reinitiation of Consultation on the Coordinated Long-Term Modified Operations of the Central Valley Project and State Water Project. February 18, 2020. Available: https://water.ca.gov/-/media/DWR-Website/Web-Pages/Programs/State-Water-Project/Files/ITP-for-Long-Term-SWP-Operations.pdf</a >.

California Department of Fish and Wildlife. 2020. Long-Term Operation of the State Water Project in the Sacramento–San Joaquin Delta. Incidental Take Permit No. 2081-2019-066-00. March 31, 2020. Sacramento, CA. Available: https://water.ca.gov/-/media/DWRWebsite/Web-Pages/Programs/State-Water-Project/Files/ITP-for-Long-Term-SWPOperations.pdf</a >.

National Marine Fisheries Service. 2019. Biological Opinion on Long-Term Operation of the Central Valley Project and the State Water Project. October 21, 2019. Available: https://repository.library.noaa.gov/view/noaa/22046</a >.

Sites Project Authority. 2021. Memorandum to Modeling Assumptions File Regarding Modeling Baseline Selection. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch03_Env_Analysis/Sites%20Project%20Authority_2021_Modeling%20Baseline%20Selection%20Memo.pdf</a >

U.S. Fish and Wildlife Service. 2019. Biological Opinion for the Reinitiation of Consultation on the Coordinated Operations of the Central Valley Project and State Water Project. Service File No. 08FBTD00-2019-F-0164. October 21, 2019. Sacramento, CA. Available: https://www.fisheries.noaa.gov/resource/document/biological-opinion-reinitiation-consultation-long-term-operation-central-valley</a >.

Chapter 4

Federal Energy Regulatory Commission. 2023a. Sites Project Authority Docket No. CD23-5-000. Notice of Preliminary Determination of a Qualifying Conduit Hydropower Facility and Soliciting Comments and Motions to Intervene (March 8, 2023). Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch04_Reg_Env_Compliance/FERC_2023a_No.%20CD23-5-000.PDF</a >

Federal Energy Regulatory Commission. 2023b.Sites Project Authority Docket No. CD23-6-000. Notice of Preliminary Determination of a Qualifying Conduit Hydropower Facility and Soliciting Comments and Motions to Intervene (March 8, 2023). Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch04_Reg_Env_Compliance/FERC_2023b_No.%20CD23-6-000.PDF</a >

Federal Energy Regulatory Commission. 2023c. Docket No. CD23-5-000—California. Notification the Funks Energy Recovery Project Meets the Qualifying Conduit Hydropower Facility Criteria (April 12, 2023). Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch04_Reg_Env_Compliance/FERC_2023c_No.%20CD23-5-000_Final.pdf</a >

Federal Energy Regulatory Commission. 2023d. Docket No. CD23-6-000—California. Notification the Terminal Regulating Reservoir Energy Recovery Project Meets the Qualifying Conduit Hydropower Facility Criteria (April 12, 2023). Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch04_Reg_Env_Compliance/FERC_2023d_No.%20CD23-6-000_Final.pdf</a >

Chapter 5

Bureau of Reclamation. 2014. Shasta Lake Water Resources Investigation Final Environmental Impact Statement. Available: https://www.usbr.gov/mp/nepa/nepa_project_details.php?Project_ID=1915</a >.

Bureau of Reclamation. 2015. Coordinated Long Term Operation of the CVP and SWP EIS, Appendix 5A CalSim II and DSM2 Modeling. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch05_Surface_H2O/Reclamation_2015_LTO%20CVP%20SWP_Appendix%205A.pdf.pdf</a >

Bureau of Reclamation. 2016. Central Valley Project (CVP) Water Contractors. Available: https://www.usbr.gov/mp/cvp-water/docs/latest-water-contractors.pdf</a >.

Bureau of Reclamation. 2021a. Projects & Facilities, Dams. Funks Dam Details. Available: https://www.usbr.gov/projects/index.php?id=139</a >

Bureau of Reclamation. 2021b. Projects & Facilities, Dams. Shasta Dam Details. Available: https://www.usbr.gov/projects/index.php?id=241</a >

Bureau of Reclamation. 2021c. Projects & Facilities, Dams. Folsom Dam Details. Available: https://www.usbr.gov/projects/index.php?id=74</a >.

Bureau of Reclamation. 2021d. Projects & Facilities, Dams. Nimbus Dam Overview. Available: https://www.usbr.gov/projects/index.php?id=222</a >.

Bureau of Reclamation and California Department of Water Resources. 2008. North-of-the-Delta Off-Stream Storage Investigation: Plan Formulation Report. Prepared for Reclamation by URS Corporation under Contract 06CS204097A. 353pp. Available: http://s3-us-west-2.amazonaws.com/ucldc-nuxeo-ref-media/6a8b0fb3-c504-48cc-86f4-623d280d0ee0</a >.

Bureau of Reclamation and California Department of Water Resources. 2019. Yolo Bypass Salmonid Habitat Restoration and Fish Passage Project, Final Environmental Impact Statement/Environmental Impact Report. State Clearinghouse # 2013032004. May. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch05_Surface_H2O/Reclamation%20and%20CDWR_2019_Yolo%20Bypass%20FEIS-EIR</a >

Butte County Department of Water and Resource Conservation. 2016. Butte County Water Inventory Analysis. Final Report. June 2016. Available: http://buttecounty.granicus.com/MetaViewer.php?view_id=2&clip_id=341&meta_id=57394</a >.

California Department of Fish and Wildlife. 2020. Incidental Take Permit for the Long-Term Operation of the State Water Project in the Sacramento San Joaquin Delta. March 31, 2020. Available: https://water.ca.gov/-/media/DWR-Website/Web-Pages/Programs/StateWater-Project/Files/ITP-for-Long-Term-SWPOperations.pdf?la=en&hash=AE5FF28E0CB9FA5DC67EF1D6367C66C5FF1B8B55</a >.

California Department of Transportation. 2019. Seismic Design Criteria. Version 2.0. https://dot.ca.gov/-/media/dot-media/programs/engineering/documents/seismicdesigncriteria-sdc/202007-seismicdesigncriteria-v2-a11y.pdf</a >.

California Department of Water Resources. 1995. Delta Atlas. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/exhibit3/rdeir_sdeis_comments/RECIRC_2646_ATT%203.pdf</a >.

California Department of Water Resources. 2005. North of Delta Offstream Storage Investigations, Sites Reservoir Inundation Analysis. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch05_Surface_H2O/DWR_2005_NODOS_Innundation.pdf</a >

California Department of Water Resources. 2010. Fact Sheet, Sacramento River Flood Control Project Weirs and Flood Relief Structures. Last revised: Unknown. Available: http://www.rd108.org/wp-content/uploads/2015/07/WeirsReliefStructures.pdf</a >.

California Department of Water Resources and Bureau of Reclamation. 2016. California WaterFix Biological Assessment, Appendix 5A–Attachment 4: Yolo Bypass Floodplain Hydraulics. July. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/exhibit104/docs/App_5.A_CALSIM_RevisedDraftBA.pdf</a >.

California Department of Water Resources. 2017a. State Plan of Flood Control Descriptive Document Update. August. Last revised: Unknown. Available at: https://cawaterlibrary.net/wp-content/uploads/2017/10/CVFPP-SPFC-DescriptiveDoc-Aug2017-compiled.pdf</a >.

California Department of Water Resources. 2017b. 2017 Flood System Status Report. August. Last revised: Unknown. Available at: https://cawaterlibrary.net/document/2017-flood-system-status-report/</a >.

California Department of Water Resources. 2019. California Water Plan Update 2018. Available: https://water.ca.gov/-/media/DWR-Website/Web-Pages/Programs/California-Water-Plan/Docs/Update2018/Final/California-Water-Plan-Update-2018.pdf</a >.

California Department of Water Resources. 2020. The Final State Water Project Delivery Capability Report 2019. August 26, 2020. Available: https://water.ca.gov/Library/Modeling-and-Analysis/Central-Valley-models-and-tools/CalSim-II/DCR2019</a >.

cbec. In preparation. Draft Technical Memorandum: Historic Flow Analysis (14‐1036–Knights Landing Outfall Gates Fish Exclusion Project). Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch05_Surface_H2O/cbec%202015_14-1036_KLOG_Historic_Flow_Analysis_012015.pdf</a >

Colusa County Resource Conservation District. 2012. Colusa Basin Watershed Management Plan. December. Last revised: Unknown. https://www.sacramentoriver.org/forum/lib/library/docs/Colusa_Basin_Watershed_Management_Plan_(2012).pdf</a >.

Glenn-Colusa Irrigation District. n.d. GCID Fact sheet. Available: https://912afe62-5b11-482e8c47-c2358db4f96b.filesusr.com/ugd/c88b6b_b5394b07da4d40a280cb0795b19469d9.pdf?index=true</a >.

Gray, A.B. and Pasternack, G.B. 2016. Colusa Basin Drainage Area Fluvial Sediments: Dynamics, Environmental Impacts and Recommendations for Future Monitoring of The Colusa Basin Suspended Sediment Project. (SWAMP-MR-RB5-2016-0002.) Prepared for Central Valley Regional Water Quality Control Board, Sacramento, CA. Last revised: Unknown. Available: https://www.waterboards.ca.gov/water_issues/programs/swamp/docs/reglrpts/r5_cbds_reg_mar2016.pdf</a >.

T. Harvey & Associates, G. Mathias Kondolf, Geomorph, and Blankinship & Associates. 2008. Colusa Basin Watershed Assessment. Prepared for Colusa County Resource Conservation District. December. https://calisphere.org/item/ark:/86086/n28c9v8k/</a >.

Irvine Ranch Water District. 2021. Water Supply & Reliability. Available: https://www.irwd.com/services/water-supply-reliability#:~:text=IRWD’s%20drinking%20water%20comes%20from,geographic%20location%20within%20the%20District.&text=into%20the%20future.-,IRWD’s%20drinking%20water%20comes%20from%20two%20primary,local%20groundwater%20and%20imported%20water</a >.

Jacobs. 2020. Colusa Basin Drain Hydraulic Modeling, Final Technical Memorandum. Prepared for Henry Luu, Sites Program Management Team. August 28, 2020. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch05_Surface_H2O/Jacobs_2020.pdf</a >

James, L. A., and M. B. Singer. 2008. Development of the Lower Sacramento Valley FloodControl System: Historical Perspective. Natural Hazards Review. August 2008. Available: https://www.researchgate.net/publication/228344566_Development_of_the_Lower_Sacramento_Valley_Flood-Control_System_Historical_Perspective</a >. Accessed: February 8, 2023.

Kalb, L. and R. Opshal. 2017. Town of Maxwell floods as worry about Oroville Dam shifts to creeks and canals. The Sacramento Bee. Available: https://www.sacbee.com/news/weather/article133701629.html</a >

National Marine Fisheries Service. 2016. Endangered Species Act Section 7(a)(2) Biological Opinion and Magnuson-Stevens Fishery Conservation and Management Act Essential Fish Habitat Response and Fish and Wildlife Coordination Act Recommendations for Relicensing the Oroville Facilities Hydroelectric Project, Butte County California (FERC Project No. 2100-134). (Oroville Facilities Biological Opinion). Available: https://repository.library.noaa.gov/view/noaa/27563</a >.

National Oceanographic and Atmospheric Administration. 2021. California Nevada River Forecast Center. Sacramento River–Bend Bridge. Available: https://www.cnrfc.noaa.gov/graphicalRVF.php?id=BDBC1</a >

Northwest Hydraulic Consultants. 2006. North Delta Sedimentation Study. March. West Sacramento, CA. Prepared for California Department of Water Resources. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch05_Surface_H2O/NHC_2006_NorthDeltaSedimentStudy.pdf</a >

Serna, J. 2017. Shasta Dam makes history as water flows from top gates for first time in 20 years. Los Angeles Times. Available: https://www.latimes.com/local/lanow/la-me-shasta-reservoir-water-release-20170223-story.html</a > Copyright protected. See introduction for more information.

Sites Project Authority. 2017. Water Storage Investment Program Application: Physical Benefits Tab–Attachment 1: Flood Control Benefits. August. 2017. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch05_Surface_H2O/Sites%20Project%20Authority_2017.pdf</a >

Solis, N. 2017. Shasta County agencies preparing flooding scenarios. Redding Record Searchlight. Available: https://www.latimes.com/local/lanow/la-me-shasta-reservoir-water-release-20170223-story.html</a > Copyright protected. See introduction for more information.

State Water Resources Control Board. 2006. Water Quality Control Plan for the San Francisco Bay/Sacramento-San Joaquin Delta Estuary. December 13. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/wq_control_plans/2006wqcp/</a >.

State Water Resources Control Board. 2018. Water Quality Control Plan for the San Francisco/Sacramento-San Joaquin Delta Estuary. December 12. Available: https://www.waterboards.ca.gov/plans_policies/docs/2018wqcp.pdf</a >.

U.S. Army Corps of Engineers. 2002. Sacramento and San Joaquin River Basins Comprehensive Study, Technical Studies Documentation. Sacramento District. December. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/bay_delta_plan/water_quality_control_planning/docs/sjrf_spprtinfo/usace_2002.pdf

U.S. Fish and Wildlife Service. 2019. Biological Opinion for the Reinitiation of Consultation on the Coordinated Operations of the CVP and SWP. Service File No. 08FBTD00-2019-F0164. October. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch05_Surface_H2O/USFWS_2019.pdf</a >

U.S. Geological Survey. 1982. Guidelines for Determining Flood Flow Frequency. Bulletin #17B of the Hydrology Subcommittee of the Interagency Advisory Committee on Water Data. Available: https://water.usgs.gov/osw/bulletin17b/dl_flow.pdf</a >.

U.S. Geological Survey. 2010. Annual Data Report, Basin Schematic. Available: https://ca.water.usgs.gov/data/waterdata/Schematics2010/lake.oroville.pdf</a >.

U.S. Geological Survey. 2021a. National Water Information System, Peak Streamflow for the Nation. Stream gage 11390672 Stone Corral C Nr Sites CA. Available: https://nwis.waterdata.usgs.gov/nwis/peak?site_no=11390672&agency_cd=USGS&format=html</a >

U.S. Geological Survey. 2021b. StreamStats, Data-Collection Station Report. Station 11390672 Stone Corral C Nr Sites CA. Available: https://www.usgs.gov/streamstats</a >

U.S. Geological Survey. 2021c. StreamStats, Data-Collection Station Report. Station 11378000 SACRAMENTO R NR RED BLUFF CA. Available: https://www.usgs.gov/streamstats</a >

U.S. Geological Survey. 2021d. National Water Information System, Peak Streamflow for the Nation. Stream gage 11378000 SACRAMENTO R NR RED BLUFF CA. Available: https://nwis.waterdata.usgs.gov/nwis/peak/?site_no=11378000</a >

U.S. Geological Survey. 2021e. StreamStats, Data-Collection Station Report. Station 11389500 SACRAMENTO R A COLUSA CA. Available: https://www.usgs.gov/streamstats</a >

U.S. Geological Survey. 2021f. National Water Information System, Peak Streamflow for the Nation. Stream gage 11389500 SACRAMENTO R A COLUSA CA. Available: https://nwis.waterdata.usgs.gov/usa/nwis/peak/?site_no=11389500</a >

U.S. Geological Survey. 2021g. StreamStats, Data-Collection Station Report. Station 11390500 SACRAMENTO R BL WILKINS SLOUGH NR GRIMES CA. Available: https://www.usgs.gov/streamstats</a >

U.S. Geological Survey. 2021h. National Water Information System, Peak Streamflow for the Nation. Stream gage 11390500 SACRAMENTO R BL WILKINS SLOUGH NR GRIMES CA. Available: https://nwis.waterdata.usgs.gov/nwis/peak/?site_no=11390500</a >

U.S. Geological Survey. 2021i. StreamStats, Data-Collection Station Report. Station 11425500 SACRAMENTO R A VERONA CA. Available: https://www.usgs.gov/streamstats</a >

U.S. Geological Survey. 2021j. National Water Information System, Peak Streamflow for the Nation. Stream gage 11425500 SACRAMENTO R A VERONA CA. Available: https://nwis.waterdata.usgs.gov/nwis/peak?site_no=11453000&agency_cd=USGS&form at=html.</a >

U.S. Geological Survey. 2021k. National Water Information System, Mean Daily Discharge. Stream gage 11391021 FREMONT WEIR SPILL TO YOLO BYPASS NR VERONA CA. Available: https://nwis.waterdata.usgs.gov/nwis/dv?cb_00060=on&format=html&site_no=11391021&referred_module=sw&period=&begin_date=1947-01-01&end_date=1975-09-29</a >

U.S. Geological Survey. 2021l. National Water Information System, Peak Streamflow for the Nation. Stream gage 11453000 YOLO BYPASS NR WOODLAND CA. Available: https://nwis.waterdata.usgs.gov/nwis/peak?site_no=11425500&agency_cd=USGS&format=html</a >

U.S. Geological Survey. 2021m. StreamStats, Data-Collection Station Report. Station 11453000 YOLO BYPASS NR WOODLAND CA. Available: https://www.usgs.gov/streamstats</a >

U.S. Geological Survey. 2021n. National Water Information System. Available: https://waterdata.usgs.gov/nwis</a >. Data for flow in the Sacramento River below Wilkins Slough and the Yolo Bypass near Woodland

U.S. Geological Survey. 2022. StreamStats, Peak-Flow Statistics Flow Report [2012 5113 Region 1 North Coast]. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch05_Surface_H2O/USGS_2022_StreamStats_Hunters%20Creek.pdf</a >

Yates, Eugene B. 1989. Water Quality and Supply on Cortina Rancheria, Colusa County, California. U.S. Geological Survey Water-Resources Investigations Report 89-4004. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch05_Surface_H2O/Yates_1989_Water_Quality_and_Supply.pdf</a >

Personal Communications

Rude, Pete. Civil Engineer. Jacobs. April 23, 2021—Smartsheet response re: TRR West emergency releases to Nicole Williams, Project Manager, ICF, Sacramento, CA

Chapter 6

Alpers, C. N., C. Eagles-Smith, C. Foe, S. Klasing, M. C. Marvin-DiPasquale, D. G. Slotton, and L. Windham-Meyers. 2008. Sacramento–San Joaquin Delta Regional Ecosystem Restoration Implementation Plan, Ecosystem Conceptual Model. Mercury. January 24. https://www.researchgate.net/publication/259317851_Mercury_cycling_in_agricultural_and_managed_wetlands_Yolo_Bypass_California_Spatial_and_seasonal_variations_in_water_quality</a >.

Alpers, C., J.A. Fleck, M. Marvin-DiPasquale, C.A. Striker, M. Stephenson, and H.E. Taylor. 2013. Mercury cycling in agricultural and managed wetlands, Yolo Bypass, California: Spatial and seasonal variations in water quality. Science of the Total Environment 484: 276–287. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/usdoi/spprt_docs/doi_inge_2008.pdf</a >.

Ayers, R. S., and D. W. Westcot. 1985. Water Quality for Agriculture. FAO Irrigation and Drainage Paper 29 Rev. 1. Available: https://www.waterboards.ca.gov/water_issues/programs/tmdl/records/state_board/1985/ref2648.pdf</a >.

Azimuth Consulting Group Partnership. 2012. Site C – Clean Energy Project in British Columbia, Canada. Volume 2. Appendix J, Part 1. Mercury Technical Synthesis Report. Prepared for BC Hydro Power and Authority. December. Available: https://iaac-aeic.gc.ca/050/documents_staticpost/63919/85328/Vol2_Appendix_J.pdf</a >.

Bay Delta Live. 2019. North Delta Food Web Action Fact Sheet. Available: https://www.baydeltalive.com/assets/5c92b61032e1bfd2c6a30d4ee74773aa/application/pdf/North_Delta_Food_Web_Study_Fact_Sheet_06272019.pdf</a >.

Berg, M., and M. Sutula. 2015. Factors Affecting Growth of Cyanobacteria with Special Emphasis on the Sacramento-San Joaquin Delta. August. Prepared for: The Central Valley Regional Water Quality Control Board and The California Environmental Protection Agency State Water Resources Control Board. Technical Report 869. August 2015. Available: https://amarine.com/wp-content/uploads/2018/01/Cyano_Review_Final.pdf</a >.

Beutel, M.W. 2003. Hypolimnetic Anoxia and Sediment Oxygen Demand in California Drinking Water Reservoirs. Lake and Reservoir Management 19(3):208–221. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Beutel_2003_Hypolimnetic%20Anoxia%20and%20Sediment%20Oxygen%20Demand%20in%20California%20Drinking%20Water%20Reservoirs.pdf</a >

Bodaly, R.A., Jansen, W.A., Majewski, A.R., Fudge, R.J.P., Strange, N.E., Derksen, A.J., and D.J., and Green, A. 2007. Post-impoundment time course of increased mercury concentrations in fish in hydroelectric reservoirs of northern Manitoba, Canada. Arch. Environ. Contam. Toxicol. 53:379–389. https://www.researchgate.net/publication/6111455_Postimpoundment_Time_Course_of_Increased_Mercury_Concentrations_in_Fish_in_Hydroelectric_Reservoirs_of_Northern_Manitoba_Canada</a >.

Bolotaolo, M. T. Kurobe, B. Puschner, B.G. Hammock, M.J. Hengel, S. Lesmeister, and S.J. Teh. 2020. Analysis of Covalently Bound Microcystins in Sediments and Clam Tissue in the Sacramento-San Joaquin River Delta, California, USA. Toxins 12(3):178. Available: https://www.mdpi.com/2072-6651/12/3/178/htm</a >.

Boyer, K. and M. Sutula. 2015. Factors Controlling Submersed and Floating Macrophytes in the Sacramento-San Joaquin Delta. Prepared for Central Valley Regional Water Quality Control Board and California Environmental Protection Agency State Water Resources Control Board. Agreement Number 12-135-250. Southern California Coastal Water Research Project Technical Report 870. Available: https://ftp.sccwrp.org/pub/download/DOCUMENTS/TechnicalReports/870_FactorsControllingSubmersedAndFloatingMacrophytesInSac-SanJoaquinDelta.pdf</a >.

Brunberg, A-K., and P. Blomqvist. 2002. Benthic Overwintering of Microcystis Colonies under Different Environmental Conditions. Journal of Plankton Research 24(11):1247–1252. Available: https://academic.oup.com/plankt/article/24/11/1247/1505496</a >.

Brune, G. M. 1953. Trap Efficiency of Reservoirs. June. Transactions, American Geophysical Union 34(3):407–418. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Brune_1953_Trap_Efficiency_of_Reservoirs.pdf</a >

Cabana, G., A. Tremblay, J. Kalff, and J. Rasmussen. 1994. Pelagic Food Chain Structure in Ontario Lakes: A Determinant of Mercury Levels in Lake Trout (Salvelinus namaycush). Canadian Journal of Fisheries and Aquatic Science 51:381–389. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Cabana_etal_1994_PelagicFood.pdf</a >

Calder, R. S. D., A. T. Schartup, M. Li, A. P. Valberg, P. H. Balcom, and E. M. Sunderland. 2016. Future Impacts of Hydroelectric Power Development on Methylmercury Exposures of Canadian Indigenous Communities. Environmental Science and Technology. 50:13115−13122. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/CalderEtAl_2016.pdf</a >

California Department of Public Health. 2021. Algal Blooms. Environmental Health Investigations Branch. Available: https://www.cdph.ca.gov/Programs/CCDPHP/DEODC/EHIB/EAS/Pages/HABs.aspx</a >.

California Department of Water Resources. 2020. Water Data Library. Available: http://wdl.water.ca.gov/waterdatalibrary/</a >.

California Department of Water Resources. 2021. DSM2: Delta Simulation Model II. Webpage with model information and files available for download. Available: https://water.ca.gov/Library/Modeling-and-Analysis/Bay-Delta-Region-models-and-tools/DeltaSimulation-Model-II</a >.

California Division of Drinking Water. 2018. Secondary Drinking Water Standards. Available: https://www.waterboards.ca.gov/drinking_water/certlic/drinkingwater/documents/ddw_secondary_standards.pdf</a >.

California Division of Drinking Water. 2020. MCLs, DLRs, PHGs, for Regulated Drinking Water Contaminants. Available: https://www.waterboards.ca.gov/drinking_water/certlic/drinkingwater/documents/mclreview/mcls_dlrs_phgs.pdf</a >.

California Irrigation Management Information System. 1999. Reference evapotranspiration (ETo) zone map. Available: https://cimis.water.ca.gov/App_Themes/images/etozonemap.jpg</a >.

California Water Boards. 2019. Media Release: Harmful Algal Bloom Confirmed in Black Butte Lake. June. Available: https://www.waterboards.ca.gov/press_room/press_releases/2019/pr06132019_hab_black_butte_lake.pdf</a >.

California Water Commission. 2021. Water Storage Investment Program: Sites Reservoir Project Continuing Eligibility and Feasibility Determination. December 15, 2021. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/CaliforniaWaterCommission_2021_Determination.pdf</a >

Central Valley Regional Water Quality Control Board. 2002. Upper Sacramento River TMDL for Cadmium, Copper & Zinc. Final Report. April. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/CVRWQCB_2002_upper%20Sac%20R%20metals_tmdl_final_rpt.pdf</a >

Central Valley Regional Water Quality Control Board. 2010a. Sacramento–San Joaquin Delta Estuary TMDL for Methylmercury. Final Staff Report. April. Prepared by Wood, M., C. Foe, J. Cooke, and S. Louie. Available online at: https://www.waterboards.ca.gov/rwqcb5/water_issues/tmdl/central_valley_projects/delta_hg/archived_delta_hg_info/april_2010_hg_tmdl_hearing/apr2010_tmdl_staffrpt_final.pdf</a >.

Central Valley Regional Water Quality Control Board. 2010b. Amendments to the Water Quality Control Plan for the Sacramento River and San Joaquin River Basins for the Control of Methylmercury and Total Mercury in the Sacramento-San Joaquin Delta Estuary. Staff Report. Report prepared by: M. L. Wood, P. Morris, J. Cooke, and S. J. Louie. April 2010. Available: https://www.waterboards.ca.gov/centralvalley/water_issues/tmdl/central_valley_projects/delta_hg/archived_delta_hg_info/april_2010_hg_tmdl_hearing/apr2010_bpa_staffrpt_final.pdf</a >.

Central Valley Regional Water Quality Control Board. 2019a. The Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board, Central Valley Region: The Sacramento River Basin and the San Joaquin River Basin. Fifth Edition. Revised February 2019. Available: https://www.waterboards.ca.gov/centralvalley/water_issues/basin_plans/sacsjr_201902.pdf</a >.

Central Valley Regional Water Quality Control Board. 2019b. Nonpoint Source 319(H) Program Cyanobacteria and Harmful Algal Blooms Evaluation Project Harmful Algal Bloom Primer. November. Available: https://www.waterboards.ca.gov/centralvalley/water_issues/nonpoint_source/harmful_algal_blooms/final_hab_primer.pdf</a >.

Chorus, I., and M. Welker (eds.). 2021. Toxic Cyanobacteria in Water. 2nd edition. Boca Raton, FL: CRC Press, on behalf of the World Health Organization. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Chorus_Welker_2021_ToxicCyano.pdf</a >

Chu, K.W. and K.L. Chow. 2002. Synergistic toxicity of multiple heavy metals is revealed by a biological assay using a nematode and its transgenic derivative. Aquatic Toxicology61:53-64. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Chu%20and%20Chow_2002_Synergistictoxicity.pdf</a >

Connor, M.S., J.A. Davis, J. Leatherbarrow, B.K. Greenfield, A. Gunther, D. Hardin, T. Mumley, J.J. Oram, C. Werme. 2007. The slow recovery of San Francisco Bay from the legacy of organochlorine pesticides. Environmental Research 105(2007): 87-100. Available: The slow recovery of San Francisco Bay from the legacy of organochlorine pesticides – ScienceDirect. Accessed: April 2, 2021. https://www.sfei.org/sites/default/files/biblio_files/Connor_et_al_2007_legacy_pesticides.pdf</a >.

Conrad, J.L., D. Chapple, E. Bush, E. Hard, J. Caudill, J.D. Madsen, W. Prat, S. Acuna, N. Rasmussen, P. Gilbert, A. Calderaro, and S. Khanna. 2020. Critical Needs for Control of Invasive Aquatic Vegetation in the Sacramento-San Joaquin Delta. https://deltacouncil.ca.gov/pdf/dpiic/meeting-materials/2020-03-02-item-4-aquatic-weeds-paper.pdf</a >.

Dahm, C.N., A.E. Parker, A.E. Adelson, M.A. Christman, and B.A. Bergamaschi. 2016. Nutrient Dynamics of the Delta: Effects on Primary Producers. San Francisco Estuary and Watershed Science 14(4):1-35. Available: https://escholarship.org/uc/item/1789c0mz</a >.

Davis, B., J. Adams, M. Bedwell, A. Bever, D. Bosworth, T. Flynn, J. Frantzich, R. Hartman, J. Jenkins, N. Kwan, M. MacWilliams, A. Maquire, S. Perry, C. Pien, T. Treleaven, H. Wright, and L. Twardochleb. 2022. North Delta Food Subsidy Synthesis: Evaluating Flow Pulses from 2011-2019. Draft. March. Department of Water Resources, Division of Integrated Science and Engineering. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1045%20Bay%20Delta%20Modeling%20Forum%202000.pdf</a >.

Deas, M. L. and C. L. Lowney. 2000. Water Temperature Modeling Review, Central Valley. September. California Water Modeling Forum. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1045%20Bay%20Delta%20Modeling%20Forum%202000.pdf</a >.

Delta Stewardship Council. 2021. North Bay Aqueduct. Available: https://viewperformance.deltacouncil.ca.gov/pm/north-bay-aqueduct#:~:text=The%20current%20North%20Bay%20Aqueduct,high%2Dquality%20habitat%20for%20listed</a >.

Division of Boating and Waterways. 2021a. Floating Aquatic Vegetation. Available: https://dbw.parks.ca.gov/?page_id=28995#:~:text=If%20you%20sight%20water%20hyacinth,nearest%20landmark%20of%20the%20sighting</a >.

Division of Boating and Waterways. 2021b. Submersed Aquatic Vegetation. Available: http://dbw.parks.ca.gov/?page_id=28994</a >.

Domagalski, J.L. and P.D. Dilaeanis. 2000. Water-Quality Assessment of the Sacramento River Basin, California—Water Quality of Fixed Sites, 1996-1998. U.S. Geological Survey Water-Resources Investigations Report 00-4247. National Water Quality Assessment Program. https://ca.water.usgs.gov/user_projects/sac_nawqa/Publications/WRIR_2000-4247/wrir004247.pdf</a >.

Dzialowski, A.R., N.C. Lim, P. Liechti, and J. Beury. 2007. Internal Nutrient Recycling in Marion Reservoir. Kansas Biological Survey Report No. 145. October. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Dzialowski%20et%20al_2007_InternalNutrient.pdf</a >

Dziga, D., M. Kokocinski, A. Maksylewicz, U. Czajo-Prokop, and J. Barylski. 2016. Cylindrospermopsin Biodegradation Abilities of Aeromonas sp. Isolated from Rusalka Lake. Toxins, 8(3), 55. February 25. Available: https://www.mdpi.com/2072-6651/8/3/55/htm</a >.

Elliott, J. A. 2010. The Seasonal Sensitivity of Cyanobacteria and Other Phytoplankton to Changes in Flushing Rate and Water Temperature. Global Change Biology 16:864–876. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/DWR-708.pdf</a >.

Fafard, P. 2018. How and Why Lakes Stratify and Turn Over: We explain the science behind the phenomena. Available: https://www.iisd.org/ela/blog/commentary/lakes-stratify-turn-explain-science-behind-phenomena/</a >.

Farrão-Filho, A. da S., and B. Kozlowsky-Suzuki. 2011. Cyanotoxins: Bioaccumulation and Effects on Aquatic Animals. Marine Drugs 9:2792–2772. Available: https://www.mdpi.com/1660-3397/9/12/2729</a >.

Food and Agriculture Organization of the United Nations. 1996. Control of Water Pollution from Agriculture – FAO Irrigation and Drainage Paper 55. By E.D. Ongley. Chapter 4: Pesticides as Water Pollutants. Available: http://www.fao.org/3/w2598e/w2598e07.htm#chapter%204:%20pesticides%20as%20water%20pollutants</a >.

Franklin, N.M., J.L Stauber, R.P. Lim, and P. Petocz. 2002. Toxicity of Metal Mixtures to a Tropical Freshwater Alga (Chlorella sp.): The Effect of Interactions between Copper, Cadmium, and Zinc on Metal Cell Binding and Uptake. Environmental Toxicology and Chemistry 21(11):2412–2422. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Franklin%20et%20al_2002_ToxicityMetalMixtures.pdf</a >

Gagala, I. and J. Mankiewicz-Boczek. 2012. The Natural Degradation of Microcystins (Cyanobacterial Hepatotoxins) in Fresh Water – the Future of Modern Treatment Systems and Water Quality Improvement. Polish Journal of Environmental Studies 21(5):1125–1139. Available: https://pdfs.semanticscholar.org/58ad/83ba25a5744edd287df710ba3843b92385b1.pdf</a >.

Gorski, P., D. Armstrong, J. Hurley, and M. Shafer. 2006. Speciation of Aqueous Methylmercury Influences Uptake by a Freshwater Alga (Selenastrum capricornutum). Environmental Toxicology and Chemistry 25(2):534–540. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Gorski_etal_2006_SpeciationAqueous.pdf</a >

Gorski, P., D. Armstrong, J. Hurley, and D. Krabbenhoft. 2008. Influence of Natural Dissolved Organic Carbon on the Bioavailability of Mercury to a Freshwater Alga. Environmental Pollution 154:116–123. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Gorski_etal_2008_InfluenceNatural.pdf</a >

Grabowska, M. and H. Mazur-Marzec. 2014. Vertical distribution of cyanobacteria biomass and cyanotoxin production in the polymictic Siemianowka Dam Reservoir (eastern Poland). Archives of Polish Fisheries 22:41–51. March. https://www.researchgate.net/publication/272559538_Vertical_distribution_of_cyanobacteria_biomass_and_cyanotoxin_production_in_the_polymictic_Siemianowka_Dam_Reservoir_eastern_Poland</a >.

Graham, N.J.D., V.E. Wardlaw, R. Perry and J-Q Jiang. 1998. The significance of algae as trihalomethane precursors. Wat. Sci. Tech. 37(2):83–89. https://www.sciencedirect.com/science/article/abs/pii/S0273122398000134</a > Copyright protected. See introduction for more information.

Graham, J.L., K.A. Loftin, A.C. Ziegler, and M.T. Meyer. 2008. Cyanobacteria in Lakes and Reservoirs: Toxin and Taste-and-Odor Sampling Guidelines. Chapter A7, Section 7.5 of U.S. Geological Survey Techniques of Water-Resources Investigations, Book 7. September. https://www.usgs.gov/publications/chapter-a7-section-75-cyanobacteria-lakes-and-reservoirs-toxin-and-taste-and-odor</a >.

Gunnison, D., R.M. Engler, and W.H. Patrick. 1984. Chemistry and Microbiology of Newly Flooded Soils: Relationship to Reservoir-Water Quality. Abstract. From: Microbial Processes in Reservoirs. December. https://link.springer.com/chapter/10.1007/978-94-009-5514-1_3 Copyright protected. See introduction for more information.

Hall, B.D., V.L. St. Louis, K.R. Rolfhus, R.A. Bodaly, K.G. Beaty, M.J. Paterson, and K.A. Peech Cherewyk. 2005. Impacts of Reservoir Creation on the Biogeochemical Cycling of Methyl Mercury and Total Mercury in Boreal Upland Forests. Ecosystems 8: 248–266. https://link.springer.com/article/10.1007/s10021-003-0094-3</a > Copyright protected. See introduction for more information.

Harke, M.J., M.M. Steffen, C.J Gobler, T.G. Otten, S.W. Wilhelm, S.A. Wood, and H.W. Paerl. 2015. A review of the Global Ecology, Genomics, and Biogeography of the Toxic Cyanobacterium, Microcystis spp. Manuscript. Article for special issue of Harmful Algae on toxic cyanobacteria. Available: http://manuscript.elsevier.com/S1568988315301773/pdf/S1568988315301773.pdf</a >.

Hendrix, N., A.-M. Osterback, V. Sridharan, D. Jackson, S. John, M. Daniels, E. Danner, E. Jennings, A. Criss, C. M. Greene, H. Imaki, and S. T. Lindley. 2023. Model Description for the Sacramento River Winter-run Chinook Salmon Life Cycle Model: An Implementation for the Sites Reservoir Project. March. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Hendrix_etal_2023_ModelDescription.pdf</a >

Hogsett, M., H. Li, and R. Goel. 2018. The Role of Internal Nutrient Cycling in a Freshwater Shallow Alkaline Lake. Environmental Engineering Science 36(5). December. https://doi.org/10.1089/ees.2018.0422 Copyright protected. See introduction for more information..

Huisman, J., J. Sharples, J. M. Stroom, P. M. Visser, W. E. A. Kardinaal, J. M. H. Verspagen, and B. Sommeijer. 2004. Changes in Turbulent Mixing Shift Competition for Light between Phytoplankton Species. Ecology 85:2960–2970. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Huisman_etal_2004_ChangesTurbulentMixingCompetition.pdf</a >

Integrated Storage Investigations. 2000. North of Delta Offstream Storage Investigation, Draft. Progress Report. February. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Integrated%20Storage%20Investigations_2000_February_SummaryReportNODOS.pdf</a >

Interagency Ecological Program, C. Pien, J. Adams, and N. Kwan. 2021. Interagency Ecological Program: Zooplankton catch and water quality data from the Sacramento River floodplain and tidal slough, collected by the Yolo Bypass Fish Monitoring Program, 1998-2018. Version 2. Environmental Data Initiative. Available: https://doi.org/10.6073/pasta/baad532af96cba1d58d43b89c08ca081</a >. Accessed: July 26, 2022.

Interagency Working Group on Harmful Algal Bloom Related Illnesses. 2019. Letter to land and water resource managers. June 27. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/IWGHABRI_HABs_2019.pdf</a >

Interstate Technology Regulatory Council. 2022. Strategies for Preventing and Managing Benthic Harmful Cyanobacterial Blooms (HCB-2). Section 1.3, Ecology of Attached Cyanobacterial Mats. Available: https://hcb-2.itrcweb.org/introduction/. Accessed: April 1, 2023. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/ITRC_2022_StrategiesBenthic_Introduction.pdf</a >

Kaplan-Levey, R. N., O. Hadas, M. L. Summers, J. Rücker, and A. Sukenik. 2010. Akinetes: Dormant Cells of Cyanobacteria. Chapter 2 in Topics in Current Genetics. November. Available: https://www.researchgate.net/publication/226438525_Akinetes_Dormant_Cells_of_Cyanobacteria#fullTextFileContent</a >.

Kelly, C. A., J .W. M. Rudd, R. A. Bodaly, N. P. Roulet, V. L. St. Louis, A. Heyes, T. R. Moore, S. Schiff, R. Aravena, K. J. Scott, B. Dyck, R. Harris, B. Warner, and G. Edwards. 1997. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Kelly_etal_1997_IncreasesFluxes.pdf</a >

Increases in Fluxes of Greenhouse Gases and Methyl Mercury following Flooding of an Experimental Reservoir. Environmental Science and Technology 31:1334–1344. Available: http://cybrary.fomb.org/FOSL/Research/Greenhouse%20Gases/Kelly%20et%20al%201997-Increases%20in%20Fluxes%20of%20Greenhouse%20Gases%20and%20Methyl%20Mercury%20following%20Flooding%20of%20an%20Experimental%20Reservoir.pdf</a >.

Kitchens, C. M., T. H. Johengen, and T. W. Davis. 2018. Establishing Spatial and Temporal Patterns in Microcystis Sediment Seed Stock Viability and Their Relationship to Subsequent Bloom Development in Western Lake Erie. PLos ONE 13(11). November 21. Available: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6248936/pdf/pone.0206821.pdf</a >.

Kratzer, C.R., R.H. Kent, D. K Saleh, D.L. Knifong, P.D. Dileanis, and J.L. Orlando. 2011. Trends in Nutrient Concentrations, Loads, and Yields in Streams in the Sacramento, San Joaquin, and Santa Ana Basins, California 1975–2004. National Water-Quality Assessment Program. Scientific Investigation Report 2010–5228. https://pubs.usgs.gov/sir/2010/5228/

Kudela, R. M., M. D. A. Howard, S. Monismith, and H. W. Paerl. 2023. Status, Trends, and Drivers of Harmful Algal Blooms Along the Freshwater-to-Marine Gradient in the San Francisco Bay-Delta System. Special Issue: State of Bay-Delta Science 2022. Available: https://baydeltalive.com/asset_management/27163</a >.

Kutovaya, O. A., R. M. L. McKay, B. F. N. Beal, S. W. Wilhelm, D. D. Kane, J. D. Chaffin, T. B. Bridgeman, and G. S. Bullerjahn. 2012. Evidence Against Fluvial Seeding of Recurrent Toxic Blooms of Microcystis spp. in Lake Erie’s Western Basin. Harmful Algae 15:71–77. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Kutovaya_etal_2011_EvidenceAgainstFluvialSeeding.pdf</a >

Larson, D., G. Ahlgren, and E. Willén. 2014. Bioaccumulation of microcystins in the food web: a field study of four Swedish lakes. Inland Waters 4:1, 91–104. Available: https://www.tandfonline.com/doi/pdf/10.5268/IW-4.1.627?needAccess=true</a >. Accessed: July 28, 2022.

Lehman, P., K. Marr, G.L. Boyer, S. Acuna, and S.J. Teh. 2013. Long-term trends and causal factors associated with Microcystis abundance and toxicity in San Francisco Estuary and implications for climate change impacts. Hydrobiologica 718:141–158. Copyright protected. See introduction for more information.. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Lehman%20et%20al_2013_Long-termTrends.pdf</a >

Lehman, P. W., T. Kurobe, and S. J. Teh. 2022. Impact of Extreme Wet and Dry Years on the Persistence of Microcystis Harmful Algal Bloom in San Francisco Estuary. Quaternary International 621(2022):16–25. K. Marr, G. L. Boyer, S. Acuna, and S. J. Teh. 2013. Available: https://www.sciencedirect.com/science/article/pii/S1040618219309036</a >. Accessed: April 3, 2023.

Maavara, T., Q. Chen, K. Van Meter, L.E. Brown, J. Zhang, J. Ni, and C. Zarfl. 2020. River dam impacts on biogeochemical cycling. Nature Reviews Earth & Environment 1:103–116. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Maavara%20et%20al_2020_RiverDam.pdf</a >

Maguire, A., C. Stuart, M. Bedwell, B. Davis, and J. Frantzich. 2020. North Delta Flow Action 2019: Continuous Water Quality Monitoring in the Yolo Bypass. Poster presentation at 2020 Interagency Ecological Program Workshop. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=182044</a >.

Mason, R., J. Reinfelder, and F. Morel. 1996. Uptake, Toxicity, and Trophic Transfer of Mercury in a Coastal Diatom. Environmental Science and Technology 30(6):1835–1845. Copyright protected. See introduction for more information. https://pubs.acs.org/doi/epdf/10.1021/es950373d</a >

McCarthy, J. 2018. Predicted Increases in Fish Methylmercury Muscle Tissue Concentrations In Goose Bay and Lake Melville. Report prepared by Wood Environment & Infrastructure Solutions submitted to Nalcor Energy. Available: https://muskratfalls.nalcorenergy.com/wp-content/uploads/2018/09/Predicted-Increases-in-Fish-Methylmercury-Muscle-Tissue-Concentrations-in-Goose-Bay-and-Lake-Melville_Appendix-A_Appendix-B.pdf. Accessed: May 19, 2023. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/McCarthy_2018.pdf</a >

McCord, S. A., M. W. Beutel, S. R. Dent, and S. G. Schladow. 2016. Evaluation of Mercury Cycling and Hypolimnetic Oxygenation in Mercury-Impacted Seasonally Stratified Reservoirs in the Guadalupe River Watershed, California. Water Resources Research 52: 7726–7743. Available: https://agupubs.onlinelibrary.wiley.com/doi/full/10.1002/2016WR019061</a >.

Miller, A., C. Russell, and M. Wiens. 2017. Irrigating Food Crops with Water Containing Cyanobacteria Blooms. October. National Collaborating Centre for Environmental Health. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Miller%20et%20al_2017_IrrigatingCyanobacteria.pdf</a >

Miranda, L. E. 2017. Reservoir Fish Habitat Management. Available: https://www.friendsofreservoirs.com/science/best-management-practices-manual/</a >.

Mohamed, Z. A., H. M. El-Sharouny, and W. S. Ali. 2007. Microcystin Concentrations in the Nile River Sediments and Removal of Microcystin-LR by Sediments During Batch Experiments. Archives of Environmental Contamination and Toxicology 52:489–495. Available: https://www.academia.edu/56243423/Microcystin_Concentrations_in_the_Nile_River_Sediments_and_Removal_of_Microcystin_LR_by_Sediments_During_Batch_Experiments</a >.

Mohan, A., and B. Kumar. 2019. Cyanobacterial Diversity in Agriculturally Fertile Soil of Patna and Their Population Density. Journal of Biotechnology and Biochemistry 5(1):15–32. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Mohan_Kumar_2019_CyanobacterialDiversity.pdf</a >

Murphy, T., K. Phan, E. Yumvihoze, K. Irvine, K. Wilson, D. Lean, A. Poulain, B. Laird, and L.H.M. Chan. 2018a. Effects of arsenic, iron and fertilizers in soil on rice in Cambodia. Journal of Health & Pollution 8(19): 12pp. Available: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6257173/</a >.

Murphy, T., K. Phan, E. Yumvihoze, K. Irvine, K. Wilson, D. Lean, B. Ty, A. Poulain, B. Laird, and L.H.M. Chan. 2018b. Groundwater irrigation and arsenic speciation in rice in Cambodia. Journal of Health & Pollution 8(19): 9pp. Available: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6257176/</a >.

Mussen, T. D., S. Driscoll, M. E. Cook, J. D. Nordin, M. Guerin, R. Rachiele, D. J. Smith, G. M. Berg, and L. C. Thompson. 2023. Investigating Factors that Contribute to Phytoplankton Biomass Declines in the Lower Sacramento River. San Francisco Estuary & Watershed Science 21(1) Article 3. Available: https://escholarship.org/uc/item/48x1287p#main</a >.

Namiesnik, J. and A. Rabajczyk. 2010. The speciation and physico-chemical forms of metals in surface waters and sediments. Chemical Speciation & Bioavailability 22(1):1–24. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Namiesnik%20and%20Rabajczyk%202010%20The%20speciation%20and%20physico%20chemical%20forms%20of%20metals%20in%20surface%20waters%20and%20sediments.pdf</a >

National Academies Press. 2014. Bridge stormwater runoff analysis and treatment options. Available: https://www.nap.edu/catalog/22395/bridge-stormwater-runoff-analysis-andtreatment-options</a >.

National Oceanic and Atmospheric Administration. n.d.a. What is nutrient pollution? Available: https://oceanservice.noaa.gov/facts/nutpollution.html</a >.

National Oceanic and Atmospheric Administration. n.d.b. Harmful Algal Blooms: Tiny Organisms with a Toxic Punch. Available: https://oceanservice.noaa.gov/hazards/hab/</a >.

Office of Environmental Health Hazard Assessment. 2012. Toxicological Summary and Suggested Action Levels to Reduce Potential Adverse Health Effects of Six Cyanotoxins. May. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/OEHHA_2012_Toxicological%20Summary.pdf</a >

Office of Environmental Health Hazard Assessment. 2022. Recommendations for Acute Notification Levels for Anatoxin-A, Cylindrospermopsin, Microcystins and Saxitoxins. Memorandum from Lauren Zeise, Director, to Darrin Polhemus, Deputy Director, Division of Drinking Water, State Water Resources Control Board. June 15. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/OEHHA_2022_RecommendationsAcute.pdf</a > .

Open Water Mercury Modeling Workgroup. 2020. Mercury Open Water Final Report for Compliance with the Delta Mercury Control Program. Chapter 5. Delta-Mercury and Methylmercury Modeling Studies. August 31. Available: https://deltacouncil.ca.gov/pdf/science-program/2020-08-31-open-water-workgroup-chapter-5.pdf</a >.

Orlando, J.L., De Parsia, M., Sanders, C., Hladik, M., and Frantzich, J. 2020. Pesticide concentrations associated with augmented flow pulses in the Yolo Bypass and Cache Slough Complex, California: U.S. Geological Survey Open-File Report 2020–1076, 101 p., https://doi.org/10.3133/ofr20201076</a >.

Pachana, K., A. Wattanakornsiri, and J. Nanuam. 2010. Heavy Metal Transport and Fate in the Environmental Compartments. NU Science Journal 7(1):1–11. Available: https://www.researchgate.net/publication/257410426_Heavy_Metal_Transport_and_Fate_in_the_Environmental_Compartments</a >.

Pearce, A. R., D. M. Rizzo, M. C. Watzin, and G. K Druschel. 2013. Unraveling Associations between Cyanobacteria Blooms and In-Lake Environmental Conditions in Missisquoi Bay, Lake Champlain, USA, Using a Modified Self-Organizing Map. Environmental Science & Technology 47:14267–14274. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Pearce_etal_2013_UnravelingAssociationsCyanobacteria.pdf</a >

Peterson, S., J. Van Sickle, A. Herlihy, and R. Hughs. 2007. Mercury Concentration in Fish from Streams and Rivers throughout the Western United States. Environmental Science and Technology 41:58–65. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/PetersonEtAl_2007.pdf</a >

Pham, T-L., and M. Utsumi. 2018. An Overview of the Accumulation of Microcystins in Aquatic Ecosystems. Journal of Environmental Management 213:5–529. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Pham%20and%20Utsumi_2018_OverviewAccumulationMicrocystins.pdf</a >

Pickhardt, P., and N. Fisher. 2007. Accumulation of Inorganic and Methylmercury by Freshwater Phytoplankton in Two Contrasting Waterbodies. Environmental Science and Technology 41:125–131. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/PickhardtAndFisher_2007.pdf</a >

Rader, K.J., R.F. Carbonaro, E.D. van Hullebusch, S. Baken, K. Delbeke. 2019. The Fate of Copper Added to Surface Water: Field, Laboratory, and Modeling Studies. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Rader%20et%20al_2019_FateCopper.pdf</a >

Environmental Toxicology and Chemistry 38(7):1386-1399. doi: 10.1002/etc.4440. Available: https://setac.onlinelibrary.wiley.com/doi/epdf/10.1002/etc.4440</a >.

Rinta-Kanto, J. M., A. J. A. Ouellette, G. L. Boyer, M. R. Twiss, T. B. Bridgeman, and S. W. Wilhelm. 2005. Quantification of Toxic Microcystis spp. during the 2003 and 2004 Blooms in Western Lake Erie using Quantitative Real-Time PCR. Environmental Science and Technology 39:4198–4205. Available: https://users.ju.edu/aouelle/Rinta-Kanto_2005.pdf</a >.

Romo, S., J. Soria, F. Fernandez, Y. Ouahid, and A. Baron-Sola. 2013. Water Residence Time and the Dynamics of Cyanobacteria. Freshwater Biology 58:513–522. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/DWR-742.pdf</a >.

Sacramento Regional County Sanitation District. 2021. New Regional San Upgrade Virtually Eliminates Ammonia in Sacramento Region’s Wastewater. Press release. July 28. Available: https://www.regionalsan.com/press-release/new-regional-san-upgrade-virtually-eliminates-ammonia-sacramento-regions-wastewater. Accessed: April 14, 2022. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/SacramentoRegionalCountySanitationDistrict_2021_NewRegionalSan.pdf</a >

San Francisco Bay Regional Water Quality Control Board. 2008. Total Maximum Daily Load for PCBs in San Francisco Bay. Final Staff Report for Proposed Basin Plan Amendment. February 13. Available: https://www.waterboards.ca.gov/sanfranciscobay/water_issues/programs/TMDLs/sfbaypcbs/PCBs%20TMDL%20Final%20Staff%20Report%20April2017.pdf</a >.

Schemel, L.E., M.H. Cox, S.W. Hager, and T.R. Sommer. 2002. Hydrology and Chemistry of Floodwaters in the Yolo Bypass, Sacramento River System, California, During 2000. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Schemel%20et%20al%202002_WRI02-4202.pdf</a >

U.S. Geological Survey Water Resources Investigation Report 02-4202. September. Available: https://pubs.usgs.gov/wri/wri02-4202/WRI02-4202.pdf</a >.

Schmidt, J. R., S. W. Wilhelm, and G. L. Boyer. 2014. The Fate of Microcystins in the Environment and Challenges for Monitoring. Toxins 6:3354–3387. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Schmidt%20et%20al_2014_The%20Fate%20of%20Microcystins%20in%20the%20Environment%20and%20Challenges%20for%20Monitoring.pdf</a >

Seelos, M., M. Beutel, C. M. Austin, E. Wilkinson, and C. Leal. 2021. Effects of Hypolimnetic Oxygenation on Fish Tissue Mercury in Reservoirs near the New Almaden Mining Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Seelos_etal_2021_EffectsHypolimneticOxygenation.pdf</a >

District, California, USA. Environmental Pollution 268 (2021)115759. Sites Project Authority. 2021. Final HC Constructability Technical Memorandum. Prepared by Jacobs, Geosyntec, and Vanderwell. April 19. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Smith-etal_2021_Water_Boards_Framework-Strategy_HABs.pdf</a >

Slotton, D.G., J.E. Reuter, and C.R. Goldman. 1995. Mercury uptake patterns of biota in a seasonally anoxic Northern California reservoir. Water, Air, and Soil Pollution 80: 841–850. https://link.springer.com/article/10.1007/BF01189735

Smith, J., M. Sutula, K. Bouma-Gregson, and M. Van Dyke. 2021. California Water Boards’ Framework and Strategy for Freshwater Harmful Algal Bloom Monitoring: Full Report with Appendices. Southern California Coastal Water Research Project Technical Report 1141.B. March. Available: https://ftp.sccwrp.org/pub/download/DOCUMENTS/TechnicalReports/1141_FHABStrategy_FullReport.pdf</a >.

Starr Consulting, Palencia Consulting Engineers, and Rincon. 2020. Sacramento River Watershed Sanitary Survey 2020 Update Report. December. Available: https://www.amazon.com/clouddrive/share/Z5OnYuTHIwhUc1sN9Gx6YHH0Lk7JlS5S621bMRTD0rI/-ysz6dFWTUu_X7evh-ykFQ</a >.

State Water Resources Control Board. 2016. California Freshwater Harmful Algal Blooms Assessment and Support Strategy. Prepared by B. Anderson-Abbs, M. Howard, K Taberski, and K. Worcester. SWAMP-SP-2016-0001. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/SWRCB_2016_CaliforniaFreshwater.pdf</a >

State Water Resources Control Board. 2017a. Final Part 2 of the Water Quality Control Plan for Inland Surface Waters, Enclosed Bays, and Estuaries of California – Tribal and Subsistence Fishing Beneficial Uses and Mercury Provisions. Available: https://www.waterboards.ca.gov/water_issues/programs/mercury/docs/hg_lang_final.pdf</a >

State Water Resources Control Board. 2017b. Draft Staff Report for Scientific Peer Review for the Amendment to the Water Quality Control Plan for Inland Surface Waters, Enclosed Bays, and Estuaries of California, Mercury Reservoir Provisions – Mercury TMDL and Implementation Program for Reservoirs. April. Available: https://www.waterboards.ca.gov/water_issues/programs/mercury/reservoirs/docs/peer_review/02_staff_report_scientific_peer_review.pdf</a >

State Water Resources Control Board. 2020a. Nitrates and Nitrites in Drinking Water. Available: https://www.waterboards.ca.gov/drinking_water/certlic/drinkingwater/Nitrate.html</a >.

State Water Resources Control Board. 2020b. California Environmental Data Exchange Network (CEDEN). Available: http://www.ceden.org/</a >.

State Water Resources Control Board. 2021a. Surface water freshwater harmful algal blooms dataset. From: Surface Water – Freshwater Harmful Algal Blooms. California Open Data Portal, Freshwater Harmful Algal Bloom Reports database. Available: https://data.ca.gov/dataset/surface-water-freshwater-harmful-algal-blooms</a >.

State Water Resources Control Board. 2021b. Water Quality Goals Database. Available: https://public3.waterboards.ca.gov/wqgapps/. Accessed Tables for multiple metals and determined standards by assuming hardness = 50 mg/L. Cadmium – Table 20: https://public3.waterboards.ca.gov/wqgapps/wq_docs/20.xls</a > Chromium III – Table 22: https://public3.waterboards.ca.gov/wqgapps/wq_docs/22.xls</a > Copper – Table 23: https://public3.waterboards.ca.gov/wqgapps/wq_docs/23.xls Lead – Table 24: https://public3.waterboards.ca.gov/wqgapps/wq_docs/24.xls</a > Nickel – Table 25: https://public3.waterboards.ca.gov/wqgapps/wq_docs/25.xls</a > Zinc – Table 30. https://public3.waterboards.ca.gov/wqgapps/wq_docs/30.xls</a >

State Water Resources Control Board. 2021c. Quality Assurance Project Plan—Long-Term Monitoring of Bass Lakes and Reservoirs in California. Version 3. Bioaccumulation Monitoring Program and Surface Water Ambient Monitoring Program. October. Available: https://www.waterboards.ca.gov/water_issues/programs/swamp/docs/2022/bioaccumulationmonitoringprogram-lakes-2021-qapp-final.pdf</a >.

State Water Resources Control Board. 2022a. Water Quality Goals Database. Available: https://public3.waterboards.ca.gov/wqgapps/</a >. Accessed Table for silver and determined standards by assuming hardness = 50 mg/L. Silver – Table 28: https://public3.waterboards.ca.gov/wqgapps/wq_docs/28.xls</a >.

State Water Resources Control Board. 2022b. Monitoring and Analysis Plan—Long-term Monitoring of Bass Lakes and Reservoirs in California. Version 1. Bioaccumulation Monitoring Program and Surface Water Ambient Monitoring Program. November. Available: https://www.waterboards.ca.gov/water_issues/programs/swamp/docs/2022/bioaccumulationmonitoringprogram-lakes-2023-monitoringplan.pdf</a >.

State Water Resources Control Board. 2023. 2015–2022 Freshwater Harmful Algal Bloom Data from the Freshwater Harmful Algal Bloom (FHAB) Reports Database. Excel file. Available: https://data.ca.gov/dataset/ab672540-aecd-42f1-9b05-9aad326f97ec/resource/c6f760be-b94f-495e-aa91-2d8e6f426e11/download/fhab_bloomreport_portal.csv</a >.

Stewart, R., M. Saiki, J. Kuwabara, C. Alpers, M. Marvin-DiPasquale, and D. Krabbenhoft. 2008. Influence of Plankton Mercury Dynamics and Trophic Pathways on Mercury Concentrations of Top Predator Fish of a Mining-Impacted Reservoir. Canadian Journal of Fisheries and Aquatic Science 65:2351–2366. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/StewartEtAl_2008.pdf

Ta, J., L.W.J. Anderson, M.A. Christman, S. Khanna, D. Kratville, J.D. Madsen, P.J. Moran, and J.H. Viers. 2017. Invasive Aquatic Vegetation Management in the Sacramento–San Joaquin River Delta: Status and Recommendations. San Francisco Estuary and Watershed Science 15(4):1-19. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Ta%20et%20al_2017_InvasiveAquatic.pdf</a >

Tetra Tech. 2006a. Conceptual Model for Nutrients in the Central Valley and Sacramento-San Joaquin Delta. Final Report. September 20. Prepared for U.S. EPA Region IX and Central Valley Drinking Water Policy. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/TetraTech_2006a_Nutrients.pdf</a >

Tetra Tech. 2006b. Conceptual Model for Organic Carbon in the Central Valley and SacramentoSan Joaquin Delta. Final Report. April 14. Prepared for U.S. EPA Region IX and Central Valley Drinking Water Policy Workgroup. Available: https://www.waterboards.ca.gov/centralvalley/water_issues/drinking_water_policy/oc_model_final.pdf</a >.

Twardochleb, L., A. Maquire, L. Dixit, M. Bedwell, J. Orlando, M. MacWilliams, A. Bever, and B. Davis. 2021. North Delta Food Subsidies Study: Monitoring Food Web Responses to the North Delta Flow Action Plan, 2019 Report. March 5. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Twardochleb_et_al_2019%20Report%20North%20Delta%20Food%20Subsidies%20Study.pdf</a >

U.S. Department of Agriculture. 2016. Geospatial Data Gateway. Available at: https://gdg.sc.egov.usda.gov/. In: California Department of Food and Agriculture 2020. Development of Soil Organic Carbon Map for California. Presentation by the Office of Environmental Farming and Innovation. May. Available: https://www.cdfa.ca.gov/oefi/healthysoils/docs/DevelopmentofSoilOrganicCarbonMapforCalifornia_slides.pdf</a >.

U.S. Environmental Protection Agency. 1980. Ambient Water Quality for Silver. Available: https://www.epa.gov/sites/production/files/2019-03/documents/ambient-wqc-silver-1980.pdf</a >.

U.S. Environmental Protection Agency. 1986. Quality Criteria for Water 1986 (the “Gold Book”). Available: https://www.epa.gov/sites/production/files/2018-10/documents/quality-criteria-water-1986.pdf</a >.

U.S. Environmental Protection Agency. 1998a. National Strategy for the Development of Regional Nutrient Criteria. Available: https://www.epa.gov/sites/production/files/2018-10/documents/nutrient-strategy-1998.pdf</a >.

U.S. Environmental Protection Agency. 1998b. Method 1630: Methyl Mercury in Water by Distillation, Aqueous Ethylation, Purge and Trap, and Cold Vapor Atomic Fluorescence Spectrometry. August. Available: https://www.epa.gov/sites/default/files/2015-08/documents/method_1630_1998.pdf</a >.

U.S. Environmental Protection Agency. 2000. Water Quality Standards; Establishment of Numeric Criteria for Priority Toxic Pollutants for the State of California; Rule. U.S. Environmental Protection Agency (USEPA). Code of Federal Regulations, Title 40, Part 131, Section 38. In Federal Register: May 18, 2000 (Volume 65, No. 97), Rules and Regulations, pp. 31681-31719. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/USEPA_2000_EstablishmentNumeric.pdf</a >

U.S. Environmental Protection Agency. 2007. Method 7473: Mercury in Solids and Solutions by Thermal Decomposition, Amalgamation, and Atomic Absorption Spectrophotometry. Available: https://www.epa.gov/sites/default/files/2015-07/documents/epa-7473.pdf</a >.

U.S. Environmental Protection Agency. 2008. Problem formulation for the environmental fate and ecological risk, endangered species and drinking water assessments in support of the registration review of diazinon. Available: https://www3.epa.gov/pesticides/chem_search/cleared_reviews/csr_PC-057801_26-Mar-08_a.pdf</a >.

U.S. Environmental Protection Agency. 2010. Comprehensive Disinfectants and Disinfection Byproducts Rules (Stage 1 and Stage 2): Quick Reference Guide. Available: https://nepis.epa.gov/Exe/ZyPDF.cgi?Dockey=P100C8XW.txt</a >.

U.S. Environmental Protection Agency. 2016. Aquatic Life Ambient Water Quality Criterion for Selenium – Freshwater. Available: https://www.epa.gov/sites/production/files/2016-07/documents/aquatic_life_awqc_for_selenium_-_freshwater_2016.pdf</a >.

U.S. Environmental Protection Agency. 2018. Final Aquatic Life Ambient Water Quality Criteria for Aluminum. Available: https://www.epa.gov/sites/production/files/2018-12/documents/aluminum-final-national-recommended-awqc.pdf</a >.

U.S. Environmental Protection Agency. 2020a. Learn about Cyanobacteria and Cyanotoxins. Available: https://www.epa.gov/cyanohabs/learn-about-cyanobacteria-and-cyanotoxins</a >.

U.S. Environmental Protection Agency. 2020b. National Recommended Water Quality Criteria –Aquatic Life Criteria Table. Available: https://www.epa.gov/wqc/national-recommended-water-quality-criteria-aquatic-life-criteria-table</a >.

U.S. Fish and Wildlife Service. 2019. Biological Opinion for the Reinitiation of Consultation on the Coordinated Operations of the Central Valley Project and State Water Project. Service File No. 08FBTD00-2019-F-0164. October 21, 2019. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/USFWS_2019.pdf</a >

U.S. Geological Survey. 1915. Springs of California. Water Supply Paper 338. By G.A. Waring. https://doi.org/10.3133/wsp338</a >

U.S. Geological Survey. 2000. Water-Quality Assessment of the Sacramento River Basin, California: Water-Quality, Sediment and Tissue Chemistry, and Biological Data, 1995-1998. Open-File Report 2000-391. Available: Sacramento River Basin, National Water Quality Assessment Program (usgs.gov). Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/USGS_2000.pdf</a >

Walker, W.W., Jr. 1983. Significance of eutrophication in water supply reservoirs. Journal AWWA pp. 38-42. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Walker_1983_SignificanceEutrophication.pdf</a >

Watts, W.L. 1894. The Gas and Petroleum Yielding Formations of the Central Valley of California. California State Mining Bureau. Bulletin No. 3. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Watts_1894_The_Gas_and_Petroleum_Yielding_Formation.pdf</a > .

Wiener, J. G., D. P. Krabbenhoft, G. H. Heinz, and A. M. Scheuhammer. 2003a. Ecotoxicology of Mercury. Chapter 16. In Handbook of Ecotoxicology, 2nd Edition. D. J. Hoffman, B. A. Rattner, G. A. Burton, Jr., and J. Cairns, Jr. (editors). Boca Raton, FL: CRC Press. Available: http://www.jlakes.org/ch/book/Handbook.of.Ecotoxicology.2nd.ed.2003.pdf</a >.

Wiener, J. G., C. C. Gilmour, and D. P. Krabbenhoft. 2003b. Mercury Strategy for the Bay-Delta Ecosystem: A Unifying Framework for Science, Adaptive Management, and Ecological Restoration. Final Report to the California Bay-Delta Authority. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Wiener%20et%20al_2003b_MercuryStrategy.pdf</a >

Wijewickrama, M. M., and P. M. Manage. 2019. Accumulation of Microcystin-LR in Grains of Two Rice Varieties (Oryza sativa L.) and a Leafy Vegetable, Ipomoea aquatica. Toxins 11, 432. Available: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6722703/pdf/toxins11-00432.pdf</a >.

Wildman, R.A. 2016. Mercury and methylmercury in a reservoir during seasonal variation in hydrology and circulation. Lake and Reservoir Management 32:89–100. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Wildman_2016_Mercury.pdf</a >

Wilkinson, A.A., M. Hondzo, and M. Guala. 2020. Vertical heterogeneities of cyanobacteria and microcystin concentrations in lakes using a seasonal in situ monitoring station. Global Ecology and Conservation 21. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Wilkinson%20et%20al_2020_Vertical%20Heterogeneities.pdf</a >

World Health Organization. 2021. Guidelines on Recreational Water Quality—Volume 1 Coastal and Fresh Waters. Available: https://www.who.int/publications/i/item/9789240031302</a >.

Wu, X., B. Xiao, R. Li, C. Wang, J. Huang, and Z. Wang. 2011. Mechanisms and Factors Affection Sorption of Microcystins onto Natural Sediments. Environmental Science & Technology 45(7): 2641–2647. Available: https://www.researchgate.net/publication/50906398_Mechanisms_and_Factors_AffectingSorption_of_Microcystins_onto_Natural_Sediments</a >. Accessed: July 14, 2022.

Yolo County. 2014. Yolo Bypass Drainage and Water Infrastructure Improvement Study. Final Report. Prepared by Yolo Bypass Foundations, cbec, inc., Consero Solutions, and Douglas Environmental. April. Available: https://www.yolocounty.org/home/showdocument?id=23985</a >.

Personal Communication

Bettner, Thad. General Manager. Glenn-Colusa Irrigation District. Week of September 5, 2022—Phone conversation with John Spranza, Integration Environmental Permitting Lead, HDR, Inc., Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Bettner_PersComm.pdf</a >

Davis, Brittany E., PhD. Environmental Program Manager. California Department of Water Resources. July 6, 2021—Email to John Spranza, Integration Environmental Permitting Lead, HDR, Inc., Sacramento, CA.

Sutton, Jeffery. General Manager. Tehama-Colusa Canal Authority. Week of September 5, 2022—Phone conversation with John Spranza, Integration Environmental Permitting Lead, HDR, Inc., Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch06_Surface_H2O_Qual/Sutton_PersComm.pdf

Chapter 7

AECOM. 2020. Geology and Seismicity Technical Memorandum. August 18. Sites Program Management Team. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch07_Fluvial_Geomorph/AECOM%202020%20Sites%20Reservoir_Geology%20%20Seismicity%20TM_HR%202.91_Final.pdf

Brown, C.J. 2000. North of the Delta Offstream Storage Investigation, Progress Report, Appendix D: Fish Survey Summary. September. Prepared for the California Department of Fish and Game with the assistance of Waiman Yip, California Department of Water Resources. https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&ved=2ahUKEwj71_LrobKAAxXWBTQIHU5TD_8QFnoECA4QAQ&url=https%3A%2F%2Fnrm.dfg.ca.gov%2FFileHandler.ashx%3FDocumentID%3D32808&usg=AOvVaw2K9TxoohCEWu-BICe9zewo&opi=89978449

California Resources Agency. 2003. SB 1086, Sacramento River Conservation Area Forum Handbook. September. Prepared for The Resources Agency, State of California by the Sacramento River Advisory Council under Senate Bill 1086, authored by Senator Jim Nielsen. https://www.sacramentoriver.org/forum/index.php?id=handbook

Gray, A.B. and Pasternack, G.B. 2016. Colusa Basin Drainage Area Fluvial Sediments: Dynamics, Environmental Impacts and Recommendations for Future Monitoring of The Colusa Basin Suspended Sediment Project. (SWAMP-MR-RB5-2016-0002.) Prepared for Central Valley Regional Water Quality Control Board, Sacramento, CA. Available: https://www.waterboards.ca.gov/water_issues/programs/swamp/docs/reglrpts/r5_cbds_reg_mar2016.pdf.

T. Harvey & Associates, G. Mathias Kondolf, Geomorph, and Blankinship & Associates. 2008. Colusa Basin Watershed Assessment. December. Prepared for Colusa County Resource Conservation District. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch07_Fluvial_Geomorph/HT%20Harvey%20et%20al_2008_Colusa%20Watershed%20Assessment

Northwest Hydraulic Consultants. 2010. Comprehensive Geomorphic and Sedimentation Analyses of Lower Sacramento River for Flood Management, Erosion Mitigation and Habitat Enhancement Design. Proceedings from the 2nd Joint Federal Interagency Conference, June 27–July 1, 2010, Las Vegas, NV. https://acwi.gov/sos/pubs/2ndJFIC/Contents/7D_Hall%20_2-26_10.pdf

Soil Survey Staff. 2020. Web Soil Survey. Natural Resources Conservation Service, United States Department of Agriculture. Available: https://websoilsurvey.sc.egov.usda.gov/App/HomePage.htm.

Takata, L., T. R. Sommer, J. L. Conrad, and B. M. Schreier. 2017. Rearing and migration of juvenile Chinook salmon (Oncorhynchus tshawytscha) in a large river floodplain. Environmental Biology of Fishes 100(9): 1105–1120. https://link.springer.com/article/10.1007/s10641-017-0631-0

Water Engineering & Technology. 1990. Geomorphic Analysis and Bank Protection Alternatives Report for Sacramento River (RM 78–194) and Feather River (RM 0–28). May. Fort Collins, CO. Prepared for U.S. Army Corps of Engineers, Sacramento District, Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch07_Fluvial_Geomorph/WET%201990.pdf

Wilcock, P.R., and J.C. Crowe. 2003. Surface-Based Transport Model for Mixed-Size Sediment. Journal of Hydraulic Engineering 129(2):120–128. https://ascelibrary.org/doi/10.1061/%28ASCE%290733-9429%282003%29129%3A2%28120%29 Copyright protected. See introduction for more information

Chapter 8

California Department of Water Resources. 2003. California’s Groundwater. Bulletin 118–Update 2003. October. Available: https://data.cnra.ca.gov/dataset/75eb6072-6810-471d-ba73-d8eadec36564/resource/5fc7e39c-34e7-433e-9dbe-ff93ce76787f/download/bulletin_118_update_2003.pdf</a >.

California Department of Water Resources. 2004a. California’s Groundwater. Bulletin 118. Sacramento Valley Groundwater Basin, Red Bluff Subbasin. Last update February 27, 2004. Available: https://data.cnra.ca.gov/dataset/12e534ff-f604-4ba9-82db486d81e082ff/resource/91cd3177-9b41-4d76-88a3-24ecede856df/download/b118_2003_basindescription_5_021_50.pdf</a >.

California Department of Water Resources. 2004b. California’s Groundwater. Bulletin 118. Sacramento Valley Groundwater Basin, Yolo Subbasin. Last update February 27, 2004. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch08_Ground_H2O/CDWR_2004_Californias%20Groundwater%20Bulletin%20118_Yolo%20Subbasin.pdf</a >

California Department of Water Resources. 2006. California’s Groundwater. Bulletin 118. Sacramento Valley Groundwater Basin, Colusa Subbasin. Last update January 1, 2006. Available: https://data.cnra.ca.gov/dataset/12e534ff-f604-4ba9-82db486d81e082ff/resource/8d756bd0-77f5-4602-9758-d0e7f0180131/download/b118_2003_basindescription_5_021_52.pdf</a >.

California Department of Water Resources. 2007. NODOS GW Quality Study Data. Unpublished Raw Water Quality Data. Northern Region Office, Red Bluff, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch08_Ground_H2O/DWR_2007_NODOSData1.pdf</a >

California Department of Water Resources. 2020a. Sustainable Groundwater Management Act (SGMA) Basin Prioritization Data. Colusa, Red Bluff, and Yolo subbasins. Available: https://data.cnra.ca.gov/dataset/sgma-basin-prioritization</a >.

California Department of Water Resources. 2020b. Well Completion Reports Map Application. Colusa, Red Bluff and Yolo Subbasins. https://dwr.maps.arcgis.com/apps/webappviewer/index.html?id=181078580a214c0986e2da28f8623b37</a >.

California Water Boards. 2021. Groundwater Ambient Monitoring and Assessment Program (GAMA). Groundwater Information System. Colusa, Red Bluff and Yolo Subbasins. Available: https://gamagroundwater.waterboards.ca.gov/gama/gamamap/public/</a >.

Davids Engineering, ERA Economics, West Yost, Woodard & Curran, Inc., and the California State University, Sacramento. 2021. Colusa Subbasin Groundwater Sustainability Plan. Prepared for Colusa and Glenn Groundwater Authorities. Available: https://colusagroundwater.org/projects/groundwater-sustainability-plan/</a >.

Ekmekci, M. 1990. Impact of Quarries on Karst groundwater Systems. Proceedings of the Antalya Symposium and Field Seminar, October 1990. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch08_Ground_H2O/Ekmekci_19901.pdf</a >

Fahey, M. 2012. Colusa Basin Watershed Management Plan. December 2012. Prepared by the Colusa County Resource Conservation District. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch08_Ground_H2O/Fahey_2012_ColusaCoBasin-Watershed-Management-Plan1.pdf</a >

GEI Consultants, Inc. 2022. Yolo Subbasin Groundwater Agency 2022 Groundwater Sustainability Plan. Prepared for Yolo Subbasin Groundwater Agency. Available: https://www.yologroundwater.org/files/acff83c75/YoloGSP_Adopted.pdf</a >.

Glenn County. 2023. Glenn Groundwater Authority. Available: https://www.countyofglenn.net/dept/planning-community-development-services/water-resources/glenn-groundwater-authority</a >.

Green, J., Pavlish, J., Leete, J., and Alexander, Jr., E. 2003. Quarrying Impacts on Groundwater Flow Paths. Sinkholes and the Engineering and Environmental Impacts of Karst: pp. 216-222. Proceedings of the Ninth Multidisciplinary Conference on Sinkholes and the Engineering and Environmental Impacts of Karst, held in Huntsville, Alabama, September 6-10, 2003. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch08_Ground_H2O/Green-et-al_20031.pdf</a >

Luhdorff & Scalmanini Consulting Engineers. 2022. Red Bluff Subbasin Groundwater Sustainability Plan. Prepared for Tehama County Flood Control and Conservation District. Available: https://tehamacountywater.org/gsa/groundwater-sustainability-plans-public-draft/</a >.

New South Wales Government Department of Primary Industries. 2005. How Salinity is Measured. Available: https://www.dpi.nsw.gov.au/agriculture/soils/more-information/salinity/general-information/measuring – :~:text=Water%20and%20soil%20salinity%20are%20measured%20by%20passing,by%20the%20concentration%20and%20composition%20of%20dissolved%20salts.</a >

Sites Project Authority and Bureau of Reclamation. 2017. Sites Reservoir Project Draft EIR/EIS, Chapter 10, Groundwater Resources. Available: https://usbr.gov/mp/nepa/includes/documentShow.php?Doc_ID=29801</a >.

The Nature Conservancy. 2020. Colusa Multi-Benefit Groundwater Recharge: Project Area. Prepared for Colusa Groundwater Authority. August 14, 2020 Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch08_Ground_H2O/TNC_2020_Colusa_Groundwater_Recharge.pdf

Chapter 9

Baldwin, B. G., D. H. Goldman, D. J. Keil, R. Patterson, T. J. Rosatti, and D. H. Wilken (eds). 2012. The Jepson Manual: Vascular Plants of California, second edition, revised. Berkeley, CA: University of California Press. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch09_Veg_Wetlands/Baldwinetal2012_p42_p43.pdf</a >

Calflora. 2021. Information on California plants for education, research, and conservation. Search for Cal-IPC Invasive Plant Species. Available: http://www.calflora.org/</a >.

California Department of Fish and Game. 2008. Land Management Plan for the Yolo Bypass Wildlife Area. Final. June 2008. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=84924&inline</a >.

California Department of Fish and Wildlife. 2018. Protocols for Surveying and Evaluating Impacts to Special Status Native Plant Populations and Sensitive Natural Communities. March 20. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=18959&inline</a >.

California Department of Fish and Wildlife. 2020. California Sensitive Natural Communities. Last revised: September 9, 2020. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=153609&inline</a >.

California Department of Fish and Wildlife. 2021. California Natural Diversity Database, RareFind 5, January 13, 2021 [43 Quadrangles: Balls Ferry, Bend, Bird Valley, Black Butte Dam, Dunnigan, Eldorado Bend, Foster Island, Fruto NE, Gerber, Gilmore Peak, Glenn, Hamilton City, Hough Springs, Kirkville, Kirkwood, Knights Landing, Leesville, Lodoga, Logandale, Los Molinos, Manor Slough, Maxwell, Meridian, Moulton Weir, Nord, Ord Ferry, Orland, Panther Spring, Princeton, Rail Canyon, Red Bank, Red Bluff East, Red Bluff West, Sites, Stone Valley, Sutter Causeway, Taylor Monument, Tuscan Springs, West of Gerber, Wildwood School, Williams, Willows, Zamora]. Available: https://apps.wildlife.ca.gov/rarefind/view/RareFind.aspx</a >.

California Department of Water Resources. 2000a. North-of-Delta Offstream Storage Investigation Progress Report. January 4. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch09_Veg_Wetlands/DWR-2000a-OffstreamStorageReservoir-botanical%20surveys.pdf</a >

California Department of Water Resources. 2000b. North-of-Delta Offstream Storage Investigation Progress Report Appendix B: Wetland Delineation Field Studies Report. April. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch09_Veg_Wetlands/DWR-2000b-NoDOS%20Delineation.pdf</a >

California Invasive Plant Council. 2021. Inventory of Invasive Plant Species of California. Last revised: February 1, 2017. Available: https://www.cal-ipc.org/plants/inventory/</a >.

California Native Plant Society. 2020. Rare Plant Program Inventory of Rare and Endangered Plants of California (online edition, v8-03 0.39). Quadrangles searched: 4012242, 4012232, 4012222, 4012212, 4012223, 4012213, 4012214, 4012221, 4012211, 4012127, 3812271, 3812188, 3812177, 3812178, 3812281, 3812187, 3912117, 3912127, 3912128, 3912126, 3912273, 3912271, 3912272, 3912263, 3912262, 3912261, 3912252, 3912251, 3912242, 3912253, 3912241, 3912231, 3912232, 3912233, 3912244, 3912234, 3912224, 3912223, 3912222, 3912168, 3912178, 3912116, and 3812176. Available: http://www.rareplants.cnps.org</a >.

Colusa County. 2012. Colusa County General Plan, Conservation Element. Available: https://countyofcolusa.org/DocumentCenter/View/2722/Conservation-Element_Colusa_Final?bidId=</a >.

County of Yolo. 2009. 2030 Countywide General Plan, Conservation and Open Space Element. Adopted November 2009, Resolution No 09-189. Available: https://www.yolocounty.org/home/showpublisheddocument?id=8005</a >.

Glenn County. 2020. Glenn County General Plan Update Existing Conditions Report. Available: https://static1.squarespace.com/static/5c8a73469b7d1510bee16785/t/5e556b56c253f84cdc287783/1582656403698/GlennCounty-ECR-Final-Feb2020.pdf</a >.

Hill, S. R. 2015. Sidalcea keckii. Flora of North America. Available: http://www.efloras.org/florataxon.aspx?flora_id=1&taxon_id=250101137</a >.

Natural Resources Conservation Service. 2006. Soil Survey of Colusa County, California. USDA, in cooperation with Colusa County Resource Conservation District; State of California, Department of Conservation; Regents of the University of California; United States Department of Agriculture, Forest Service; and United States Department of the Interior, Bureau of Land Management and Fish and Wildlife Service. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch09_Veg_Wetlands/NRCS%202006_%20Soil%20Survey%20of%20Colusa%20County%20California.pdf</a >

Natural Resources Conservation Service. 2020a. Soil Survey Geographic (SSURGO) Database for Colusa and Glenn counties, California [Online]. U.S. Department of Agriculture. Available: https://websoilsurvey.sc.egov.usda.gov/App/WebSoilSurvey.aspx</a >.

Natural Resources Conservation Service. 2020b. Climate Data for Colusa, California. Available: http://agacis.rcc-acis.org/?fips=06011 and http://agacis.rcc-acis.org/?fips=06021</a >.

Natural Resources Conservation Service. 2020c. Climate Data for Stony Gorge, California. Available: http://agacis.rcc-acis.org/?fips=06011 and http://agacis.rcc-acis.org/?fips=06021</a >.

Tehama County. 2009. Tehama County General Plan. March. Available: https://www.co.tehama.ca.us/images/stories/planning/2009-2029%20Tehama%20County%20General%20Plan%20r1.pdf</a >.

U.S. Army Corps of Engineers. 2015. Final 2015 Regional Compensatory Mitigation and Monitoring Guidelines for South Pacific Division USACE. Final January 12, 2015. Available: https://www.spd.usace.army.mil/Portals/13/docs/regulatory/mitigation/MitMon.pdf</a >.

U.S. Fish and Wildlife Service. 2021. Information for Planning and Consultation (IPaC). List of threatened and endangered species that may occur in the proposed project, and/or may be affected by the proposed project. (Consultation Code 08ESMF00-2021-SLI-0961.) Available: https://ecos.fws.gov/ipac/</a >.

U.S. Geological Survey. 2020. Science in Your Watershed, Locate Your Watershed. Hydrological Unit Code 18020104. Available: https://water.usgs.gov/wsc/cat/18020104.html</a >. Last Updated: July 17, 2020.

Yolo Habitat Conservancy. 2018. Yolo Habitat Conservation Plan/Natural Community Conservation Plan. Final. April 2018. Available: https://www.yolohabitatconservancy.org/documents</a >.

Personal Communications

Davis, Brittany E., PhD. Environmental Program Manager. California Department of Water Resources. July 6, 2021—Email to John Spranza, Senior Ecologist/Regulatory Specialist, HDR, Sacramento, CA, and Mallory Bedwell, California Department of Water Resources. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch15_Ag_Forestry/Davis_DWR_PersComm_2021.pdf</a >

Chapter 10

Agronomy Research and Information Center. 2021. Wildlife & Alfalfa, A Natural Partnership. Regents of the University of California, Division of Agriculture and Natural Resources. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Agronomy%20Research%20&%20Information%20Center_2021_Wildlife_Alfalfa.pdf</a >

Ahl, J. S. B. 1991. Factors Affecting Contributions of the Tadpole Shrimp, Lepidurus Packardi, to Its Oversummering Egg Reserves. Hydrobiologia 212:137–143.Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Ahl_1991_tadpole_shrimp_egg_reserves.pdf</a >

Alvarez, J. A. 2004. Rana aurora draytonii (California Red-Legged Frog) Microhabitat. Herpetological Review 32(2):162–163. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Alvarez_2004_CRLF%20microhabitat%20paper.pdf</a >

Andres, B. A., and K. L. Stone. 2009. Conservation Plan for the Mountain Plover (Charadrius montanus), Version 1.0. Manomet Center for Conservation Sciences. Manomet, MA. Available: https://www.nrc.gov/docs/ML1302/ML13022A455.pdf</a >.

Anthony, R. G., R. L. Knight, G. T. Allen, B. R. McClelland, and J. L. Hodges. 1982. Habitat Use by Nesting and Roosting Bald Eagles in the Pacific Northwest. Transactions of the North American Wildlife and Natural Resources Conference 47:332–342. Available: https://digitalcommons.unl.edu/cgi/viewcontent.cgi?article=1033&context=usfwspubs</a >.

Avian Power Line Interaction Committee. 2012. Reducing Avian Collisions with Power Lines: The State of the Art in 2012. Edison Electric Institute and APLIC. Washington, D.C. Available: https://www.resolutionmineeis.us/sites/default/files/references/avian-power-line-2012.pdf</a >.

Bank Swallow Technical Advisory Committee. 2013. Bank Swallow (Riparia riparia) Conservation Strategy for the Sacramento River Watershed, California. Version 1.0. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Bank%20Swallow%20Technical%20Advisory_2013_ConservationStrategyforBankSwallow.pdf</a >

Barr, C. B. 1991. The Distribution, Habitat, and Status of the Valley Elderberry Longhorn Beetle Desmocerus californicus dimorphus Fisher (Insecta: Coleoptera: Cerambycidae). U.S. Fish and Wildlife Service; Sacramento, California. 134 pp. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Barr_1991_VELB.pdf</a >

Bechard, M. J., C. S. Houston, J. H. Saransola, and A. S. England. 2020. Swainson’s Hawk (Buteo swainsoni), version 1.0. In Birds of the World (A. F. Poole, Editor). Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.swahaw.01</a >. Copyright protected. See introduction for more information.

Beedy, E. C., and W. J. Hamilton III. 1997. Tricolored Blackbird Status Update and Management Guidelines. Jones & Stokes Assoc. Inc., Sacramento CA, Rep. 97-099. Prepared for U.S. Fish and Wildlife Service, Sacramento CA, and California Department of Fish and Game, Sacramento, CA. Available:https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Beedy%20&%20Hamilton%201997_ManagmentGuidelines1.pdf</a >

Beedy, E. C., W. J. Hamilton, III, R. J. Meese, D. A. Airola, and P. Pyle. 2020. Tricolored Blackbird (Agelaius tricolor), version 1.0. In Birds of the World (P. G. Rodewald, Editor). Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.tribla.01</a >. Copyright protected. See introduction for more information.

Brode, J. M., and R. B. Bury. 1984. The Importance of Riparian Systems to Amphibians and Reptiles. Pages 30–36 in R. E. Warner and K. M. Hendrix (eds.), California Riparian Systems Ecology, Conservation, and Productive Management. Berkeley, CA: University of California Press. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Brode_Bury_1984_riparian1.pdf</a >

Brown, C. and W. Yip. 2000. North of the Delta Offstream Storage Investigation Progress Report Appendix E: Amphibian and Reptile Survey Summary. April. CALFED Bay-Delta Program. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Brown%20and%20Yip_2000_Appendix%20E.pdf</a >

Buehler, D. A. 2020. Bald Eagle (Haliaeetus leucocephalus), version 1.0. In Birds of the World (A. F. Poole and F. B. Gill, Editors). Introduction, Habitat, Diet and Foraging, and Breeding. Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.baleag.01</a >. Copyright protected. See introduction for more information.

Cabana, G., A. Tremblay, J. Kalff, and J. Rasmussen. 1994. Pelagic Food Chain Structure in Ontario Lakes: A Determinant of Mercury Levels in Lake Trout (Salvelinus namaycush). Canadian Journal of Fisheries and Aquatic Science 51:381–389. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Cabana_etal_1994_PelagicFood.pdf</a >

California Department of Fish and Game. 1992. 1992 Annual Report on the Status of California State-Listed Threatened and Endangered Animals and Plants. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/CDFG_1992_SWHA.pdf</a >

California Department of Fish and Game. 1995. Five-Year Status Review: Bank Swallow (Riparia riparia). Prepared for the California Fish and Game Commission. Sacramento, CA. https://www.sacramentoriver.org/bans/bans_lib/Five-year Status Review – Bank Swallow (DFG 1995).pdf</a >.

California Department of Fish and Game. 1999a. California Wildlife Habitat Relationships System. Bald Eagle Life History Account. California Interagency Wildlife Task Group. October. Available: https://www.wildlife.ca.gov/Data/CWHR/Life-History-and-Range</a >.

California Department of Fish and Game. 1999b. California Wildlife Habitat Relationships System. Bank Swallow Life History Account. Life history accounts for species in the California Wildlife Habitat Relationships System were originally published in: D. C. Zeiner, W. F. Laudenslayer, Jr., K. E. Mayer, and M. White, eds. 1988–1990. California’s Wildlife. Vol. I–III. California Department of Fish and Game, Sacramento, CA. Available: https://www.wildlife.ca.gov/Data/CWHR/Life-History-and-Range</a >. Accessed: February 18, 2021.

California Department of Fish and Game. 2005. California Wildlife Habitat Relationships System. White-tailed Kite Life History Account. California Interagency Wildlife Task Group. October. Available: https://www.wildlife.ca.gov/Data/CWHR/Life-History-and-Range</a >.

California Department of Fish and Game. 2008. Final Land Management Plan for the Yolo Bypass Wildlife Area. June. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=84924&inline</a >

California Department of Fish and Game. 2012. Staff Report on Burrowing Owl Mitigation. Sacramento, CA. Prepared by the State of California Natural Resources Agency Department of Fish and Game. Sacramento, CA. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=83843&inline=true</a >.

California Department of Fish and Wildlife. 2016. 5 Year Status Report for Swainson’s Hawk (Buteo Swainsoni). Sacramento, CA. Prepared for the California Fish and Game Commission. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/CDFW_2016_Swainson’sHawkFiveYearStatusReport.pdf</a >

California Department of Fish and Wildlife. 2017. Survey and Monitoring Protocols and Guidelines, Bald Eagle Breeding Survey Instructions. Available: https://wildlife.ca.gov/Conservation/Survey-Protocols#377281284-birds</a >.

California Department of Fish and Wildlife. 2018. Areas of Conservation Emphasis Viewer. ACE 3.0. February. Available: https://wildlife.ca.gov/Data/Analysis/Ace</a >.

California Department of Fish and Wildlife. 2020a. Special Status Invertebrate Species Accounts. Anthicus antiochensis. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=107584&inline=1</a >.

California Department of Fish and Wildlife. 2020b. Special Status Invertebrate Species Accounts. Anthicus sacramento. https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=107587&inline=1</a >.

California Department of Fish and Wildlife. 2021a. California Natural Diversity Database, RareFind 5, January. Search for special-status wildlife within 5 miles of the study area. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/CDFW_2021_CNDDB_RareFind%205.pdf</a >

California Department of Fish and Wildlife. 2021b. Guide to Wildlife Habitats of California. Available: https://wildlife.ca.gov/Data/CWHR/Wildlife-Habitats</a >.

California Department of Fish and Wildlife. 2021c. Special Animals List. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=109406&inline</a >. Last updated: February 2021.

California Department of Fish and Wildlife. 2021d. California Natural Diversity Database, RareFind 5, April. Search for California red-legged frog by county. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/CDFW_2021d_CNDDB_for%20CRLF.pdf</a >

California Department of Fish and Wildlife. 2021g. Golden Eagles in California. Available: https://wildlife.ca.gov/Conservation/Birds/Golden-Eagles</a >.

California Department of Fish and Wildlife. 2021h. Bald Eagles in California. Available: https://wildlife.ca.gov/Conservation/Birds/Bald-Eagle</a >.

California Department of Water Resources. 2000. North of Delta Offstream Storage Investigation Progress Report, Appendix B: Wetland Delineation and Field Studies Report. Draft. Prepared for Integrated Storage Investigations, CALFED Bay-Delta Program. April 2000. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/DWR-2000-NoDOS%20Delineation.pdf</a >

California Partners in Flight. 2002. Version 2.0. The oak woodland bird conservation plan: a strategy for protecting and managing oak woodland habitats and associated birds in California (S. Zack, lead author). Point Reyes Bird Observatory, Stinson Beach, CA. https://www.fs.usda.gov/psw/publications/documents/gtr-184/081_Zack.pdf – :~:text=The%20Oak%20Woodland%20Bird%20Conservation%20Plan%20%28BCP%29%20has,both%20native%20bird%20populations%20and%20other%20native%20species.</a >.

Central Valley Regional Water Quality Control Board. 2010. Sacramento–San Joaquin Delta Estuary TMDL for Methylmercury. Final Staff Report. April. Prepared by M. Wood, C. Foe, J. Cooke, and S. Louie. Available: https://www.waterboards.ca.gov/rwqcb5/water_issues/tmdl/central_valley_projects/delta_hg/archived_delta_hg_info/april_2010_hg_tmdl_hearing/apr2010_tmdl_staffrpt_final.pdf</a >.

Clevenger, A. P., and M. P. Huijser. 2011. Wildlife Crossing Structure Handbook: Design and Evaluation in North America. No. FHWA-CFL-TD-11-003. United States. Federal Highway Administration. Central Federal Lands Highway Division. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Clevenger_Huijser_2011_Wildlife_Crossing.pdf</a >

Cornell Lab of Ornithology. 2019. All About Birds. Last revised: 2019. Available: https://www.allaboutbirds.org/guide/White-tailed_Kite/</a >.

Cornell Lab of Ornithology. 2021. eBird. Search for northern harrier, golden eagle, yellow-breasted chat, and yellow warbler observations in the study area. Last updated: 2021. Available: https://ebird.org/species/norhar2/US-CA</a >.

Dixon, K. L., R. E. Dixon, and J. E. Dixon. 1957. Natural History of the White-tailed Kite in San Diego County, California. Condor 59:156–165. https://sora.unm.edu/sites/default/files/journals/condor/v059n03/p0156-p0165.pdf – :~:text=For%20the%20past%202%201%20years%20the%20White-tailed,the%20nesting%20of%20kites%20in%2035%20different%20localities.

Driscoll, D. E. 2010. Protocol for Golden Eagle Occupancy, Reproduction, and Prey Population Assessment. American Eagle Research Institute, Apache Jct., AZ. 55pp. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Driscoll_2010_Protocol%20for%20Golden%20Eagle%20Occupancy,%20Reproduction,%20and%20Prey%20Population%20Assessment.pdf</a >

Dunk, J. R. 2020. White-tailed Kite (Elanus leucurus), version 1.0. In Birds of the World (A. F. Poole and F. B. Gill, Editors). Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.whtkit.01</a >. Copyright protected. See introduction for more information.

Eng, L. L., D. Belk, and C. H. Eriksen. 1990. Californian Anostraca: Distribution, Habitat, and Status. Journal of Crustacean Biology 10:247–277. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Eng_1990_Anos.pdf</a >

Erichsen, A. L., S. K. Smallwood, A. M. Commandatore, B. W. Wilson, and M. D. Fry. 1996. White-tailed Kite Movement and Nesting Patterns in an Agricultural Landscape. Pp. 165-176 in D. M. Bird, D. E. Varland, and J. J. Negro (eds.), Raptors in Human Landscapes: Adaptations to Built and Cultivated Environments. Academic Press, London. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Erichsen_etal_Pages%20from%20Bird_etal_1996_Raptors%20in%20Human%20Landscapes_%20Adaptations%20to%20Built%20and%20Cultivated%20Environments.pdf</a >

Eriksen, C. H., and D. Belk. 1999. Fairy Shrimps of California’s Puddles, Pools, and Playas. Eureka, CA: Mad River Press. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Eriksen_Belk_1999.pdf</a >

Estep, J. A. 1989. Biology, Movements and Habitat Relationships of the Swainson’s hawk in the Central Valley of California, 1986-87. Report for the California Department of Fish and Game, Nongame Bird and Mammal Sec. Rep. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Estep_1989_Biology,%20movements,%20and%20habitat%20relationships%20of%20the%20Swainson’s%20hawk%20in%20the%20Central%20Valley%20of%20California.pdf</a >

Fellers, G. M., A. Launer, G. Rathbun, S. Bobzien, J. Alvarez, D. Sterner, R. B. Seymour, and M. Westphal. 2001. Overwintering tadpoles in the California red-legged frog (Rana aurora draytonii). Herpetological Review 32 (3):156–157. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Fellers_et_al_2001_Overwintering_CRLF.pdf</a >

Garcia, D. 2009. Spatial and Temporal Patterns of the Bank Swallow on the Sacramento River. A Thesis Presented to the Faculty of California State University, Chico, Chico, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Garcia_D_2009_Bank_Swallow_Patterns_SacRiver.pdf</a >

Garrison, B. A. 1998. Bank Swallow (Riparia riparia). In The Riparian Bird Conservation Plan: A Strategy for Reversing the Decline of Riparian-Associated Birds in California. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Garrison_1998_Bank%20Swallow%20(Riparia%20riparia)%20Species%20Account%20(1).pdf</a >

Girvetz, E. H., and S. E. Greco. 2009. Multi-Scale Predictive Habitat Suitability Modeling Based on Hierarchically Delineated Patches: An Example for Yellow-Billed Cuckoos Nesting in Riparian Forests, California, USA. Landscape Ecology 24:1315–1329. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Girvetz_Greco_2009_Multiscale_habitat_suitablity%20model_cuckoo_Sac.pdf</a >

Gorski, P, D. Armstrong, J. Hurley, and M. Shafer. 2006. Speciation of Aqueous Methylmercury Influences Uptake by a Freshwater Alga (Selenastrum capricornutum). Environmental Toxicology and Chemistry 25(2):534–540. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Gorski_etal_2006_SpeciationAqueous.pdf</a >

Gorski, P., D. Armstrong, J. Hurley, and D. Krabbenhoft. 2008. Influence of Natural Dissolved Organic Carbon on the Bioavailability of Mercury to a Freshwater Alga. Environmental Pollution 154:116–123. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Gorski_etal_2008_InfluenceNatural.pdf</a >

Halstead, B. J, S. M. Skalos, G. D. Wylie, and L. L. Casazza. 2015. Terrestrial Ecology of Semi-Aquatic Giant Gartersnakes (Thamnophis gigas). Herpetological Conservation and Biology 10(2):633–644. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Halstead_etal_2015_terrestrial_ecol_GGS.pdf</a >

Halterman, M., M. J. Johnson, J. A. Holmes, and S. A. Laymon. 2015. A Natural History Summary and Survey Protocol for the Western Distinct Population Segment of the Yellow-Billed Cuckoo: U.S. Fish and Wildlife Techniques and Methods. 45 pp. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Halterman%20et%20al_2015_NaturalHistory_SurveyProtocol.pdf</a >

Helm, B. 1998. Biogeography of Eight Large Branchiopods Endemic to California. Pages 124–139 in C. W. Witham, E. T. Bauder, D. Belk, W. R. Ferrin, Jr., and R. Orduff (eds.), Ecology, Conservation, and Management of Vernal Pool Ecosystems—Proceedings from a 1996 Conference. Sacramento, CA: California Native Plant Society. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Helm_1998_branchiopods_biogeography1.pdf</a >

Hughes, J. M. 2015. Yellow-billed Cuckoo (Coccyzus americanus), The Birds of North America Online (A. Poole, Ed.). Ithaca: Cornell Lab of Ornithology; Retrieved from the Birds of North America Online: https://birdsoftheworld.org/bow/species/yebcuc/cur/introduction</a >..

Hunt, W. G., R. E. Jackman, T. L. Hunt, D. E. Driscoll, and L. Culp. 1998. A Population Study of Golden Eagles in the Altamont Pass Wind Resource Area; Population Trend Analysis 1994–1997. Predatory Bird Research Group, University of California, Santa Cruz, CA, USA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Hunt_etal_1999_A%20Population%20Study%20of%20Golden%20Eagles%20in%20the%20Altamont%20Pass%20Wind%20Resource%20Area_%20Population%20Trend%20Analysis,%201994%E2%80%9319971.pdf</a >

Jackman, R. E and J. M. Jenkins. 2004. Protocol for Evaluating Bald Eagle Habitat and Populations in California. Prepared for Prepared for: U.S. Fish and Wildlife Service Endangered Species Division, Sacramento, CA. Garcia and Associates, San Anselmo and Pacific Gas & Electric Company, San Ramon, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Jackman_Jenkins_2004_BaldEagleprotocol1.pdf</a >

Jackman, R. E., W. G. Hunt, J. M. Jenkins, and P. J. Detrich. 1999. Prey of Nesting Bald Eagles in Northern California. Journal of Raptor Research 33:87–96. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Jackman_etal_1999_PREY%20OF%20NESTING%20BALD%20EAGLES%20IN%20NORTHERN%20CALIFORNIA1.pdf</a >

Jennings, M. R., and M. P. Hayes. 1985. Pre-1900 overharvest of California red-legged frogs (Rana aurora draytonii): the inducement for bullfrog (Rana catesbeiana) introduction. Herpetologica 41(1):94–103. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Jennings%20and%20Hayes_19851.pdf</a >

Jennings, M. R., and M. P. Hayes. 1994. Amphibian and Reptile Species of Special Concern in California. Rancho Cordova, CA: California Department of Fish and Game, Inland Fisheries Division. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Jennings_Hayes_1994_CRLF1.pdf

Johnsgard, P. A. 1990. Hawks, Eagles and Falcons of North America: Biology and Natural History. Washington and London: Smithsonian Institution Press. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Johnsgard_1990_golden_eagle1.pdf</a >

Jones, D. 2016. Trophic Transfer of a Naturally Occurring Algal Toxin from a Freshwater Lake to Little Brown Bats. Master’s Thesis. Grand Valley State University, Allendale, MI. Available: http://scholarworks.gvsu.edu/theses/816</a >.

Katzner, T. E., M. N. Kochert, K. Steenhof, C. L. McIntyre, E. H. Craig, and T. A. Miller. 2020. Golden Eagle (Aquila chrysaetos), version 2.0. In Birds of the World (P. G. Rodewald and B. K. Keeney, Editors). Introduction, Habitat, Diet and Foraging, and Breeding. Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.goleag.02</a >

Kintsch, J., S. Jacobson, and P. Cramer. 2015. The Wildlife Crossing Guilds Decision Framework: A Behavior-based Approach to Designing Effective Wildlife Crossing Structures. Available: https://arc-solutions.org/wp-content/uploads/2021/03/08.-ICOET-WildlifeCrossingGuilds-paper.pdf</a >.

Korstian, J. M., M. M. Chumchal, V. J. Bennett, and A. M. Hale. 2018. Mercury Contamination in Bats from the Central United States. Environmental Toxicology and Chemistry 37:160–165. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Korstian_et_al_2017_Mercury%20contamination%20in%20bats.pdf</a >

Langton, T. E. S., and A. P. Clevenger. 2020. Measures to Reduce Road Impacts on Amphibians and Reptiles in California. Best Management Practices and Technical Guidance. Prepared by Western Transportation Institute for California Department of Transportation, Division of Research, Innovation and System Information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Langton_Clevenger_2020_Caltrans_Guidance_Reducing_Road_Impacts_Amphibians_Reptiles.pdf</a >

Lay, C. 2008. The Status of the American Badger in the San Francisco Bay Area. MS Thesis. San Jose State University. San Jose, CA. Available: https://scholarworks.sjsu.edu/cgi/viewcontent.cgi?article=4619&context=etd_theses</a >.

Laymon, S. A. 1998. Yellow-billed Cuckoo (Coccycus americanus). In The Riparian Bird Conservation Plan: A Strategy for Reversing the Decline of Riparian-associated Birds in California. California Partners in Flight. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Laymon_1998_PRBO_Yellow-billed%20Cuckoo%20(Coccycus%20americanus).pdf</a >

Lehman, R. N. 1979. A Survey of Selected Habitat Features of 95 Bald Eagle Nest Sites in California. October. Wildlife Management Branch Administrative Report 79-1. California Department of Fish and Game. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Lehman_1979_A%20survey%20of%20selected%20habitat%20features%20of%2095%20bald%20eagle%20nest%20sites%20in%20California.pdf</a >

Mason, R., J. Reinfelder, and F. Morel. 1996. Uptake, Toxicity, and Trophic Transfer of Mercury in a Coastal Diatom. Environmental Science and Technology 30(6):1835–1845. Copyright protected. See introduction for more information. https://pubs.acs.org/doi/epdf/10.1021/es950373d</a >

Mendelsohn, J. M. and F. M. Jaksic. 1989. Hunting behaviour of Black-shouldered Kites in the Americas, Europe and Australia. Ostrich 60:1–12. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Mendelsohn_Jaksic_1989_Hunting%20behaviour_Kites_%20in_Americas_Europe_Africa_Australia.pdf</a >

Morey, S.R. 2005. Spea hammondii. In Lannoo, M.J. (Ed.).: Amphibian Declines: The Conservation Status of United States Species. University of California Press, Berkeley, pp.514–517. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Morey_in%20Lanoo_2005_spadefoot.pdf</a >

Ontario Ministry of Natural Resources and Forestry. 2016. Best Management Practices for Mitigating the Effects of Roads on Amphibians and Reptile Species at Risk in Ontario. April. Queen’s Printer for Ontario. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Ontario_Ministry_2016_BMPs_Road_Effects_%20Amphibians_Reptiles.pdf</a >

Pagel, J.E., D.M. Whittington, and G.T. Allen. 2010. Interim Golden Eagle Inventory and Monitoring Protocols; and Other Recommendations. Division of Migratory Bird Management, U.S. Fish and Wildlife Service, Carlsbad, CA and Arlington, VA. Available: https://tethys.pnnl.gov/sites/default/files/publications/Pagel-2010.pdf</a >.

Peterson, S., J. Van Sickle, A. Herlihy, and R. Hughs. 2007. Mercury Concentration in Fish from Streams and Rivers throughout the Western United States. Environmental Science and Technology 41:58–65. https://pubs.acs.org/doi/epdf/10.1021/es061070u Copyright protected. See introduction for more information.

Pickhardt, P., and N. Fisher. 2007. Accumulation of Inorganic and Methylmercury by Freshwater Phytoplankton in Two Contrasting Waterbodies. Environmental Science and Technology 41:125–131. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/PickhardtAndFisher_2007.pdf</a >

Pybus, M. J. D., P. Hobson, and D. K. Onderka. 1986. Mass Mortality of Bats Due to Probable Blue-green Algal Toxicity. Journal of Wildlife Diseases 22(3):449–450. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Pybusetal_1986_MassMortality.pdf</a >

Quinn, J. 2008. The Ecology of the American badger Taxidea taxus in California: Assessing Conservation Needs on Multiple Scales. PhD Thesis. University of California at Davis. Davis, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Quinn_2008_EcologyofAmericanBadger.pdf</a >

Riparian Habitat Joint Venture. 2004. The Riparian Bird Conservation Plan: A Strategy for Reversing the Decline of Riparian-associated Birds in California. Version 2.0. California Partners in Flight. http://www.elkhornsloughctp.org/uploads/files/1381276129Riparain%20Joint%20Venture%202004%20Riparian_Bird_Conservation_Plan.pdf</a >. Copyright protected. See introduction for more information.

Rogers, D.C. 2001. Revision of the Neartic Lepidurus (Notostraca). Journal of Crustacean Biology 21:1002–1005. https://research.nhm.org/pdfs/38894/38894.pdf</a >.

Rosenberg, K. V., Ohmart, R. D., and Anderson, B. W., 1982. Community Organization of Riparian Breeding Birds: Response to an Annual Resource Peak. Auk 99:260‒274. Available: https://sora.unm.edu/sites/default/files/journals/auk/v099n02/p0260-p0274.pdf</a >.

Scheuhammer, A. M., M. W. Meyer, M. B. Sandheinrich, and M. W. Murray. 2007. Effects of Environmental Methylmercury on the Health of Wild Birds, Mammals, and Fish. Ambio. 36:12–18. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Scheuhammer_2007_EffectsofMethylmercury.pdf</a >

Shuford, W. D. and T. Gardali (eds.). 2008. California Bird Species of Special Concern: A Ranked Assessment of Species, Subspecies, and Distinct Populations of Birds of Immediate Conservation Concern in California. Studies of Western Birds 1. Western Field Ornithologists, Camarillo, California, and California Department of Fish and Game, Sacramento, California. Available: https://wildlife.ca.gov/Conservation/SSC/Birds</a >.

Spencer, W.D., P. Beier, K. Penrod, K. Winters, C. Paulman, H. Rustigian-Romsos, J. Strittholt, M. Parisi, and A. Pettler. 2010. California Essential Habitat Connectivity Project: A Strategy for Conserving a Connected California. Prepared for California Department of Transportation, California Department of Fish and Game, and Federal Highways Administration. Sacramento, CA. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Spencer%20et%20al_2010_CaliforniaEssentialHabitatConnectivityProject.pdf</a >

Stebbins, R. C. 2003. A Field Guide to Western Reptiles and Amphibians. 3rd edition. Boston, MA: Houghton Mifflin Company. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Stebbins_2003.pdf</a >

Stewart, R., M. Saiki, J. Kuwabara, C. Alpers, M. Marvin-DiPasquale, and D. Krabbenhoft. 2008. Influence of Plankton Mercury Dynamics and Trophic Pathways on Mercury Concentrations of Top Predator Fish of a Mining-Impacted Reservoir. Canadian Journal of Fisheries and Aquatic Science 65:2351–2366. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/StewartEtAl_2008.pdf</a >

Storer, T. I. 1925. A synopsis of the Amphibia of California. University of California Publications in Zoology 27:1–342. Available: https://ia801202.us.archive.org/18/items/synopsisofamphib00stor/synopsisofamphib00stor.pdf</a >.

Swainson’s Hawk Technical Advisory Committee. 2000. Recommended timing and methodology for Swainson’s hawk nesting surveys in California’s Central Valley. May 31. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/SWHA_TAC_2000_Rec_Survey_Timing_Methods.pdf</a >

Swolgaard, C., K. Reeves, and D. Bell. 2008. Foraging by Swainson’s Hawks in a Vineyard-dominated Landscape. Journal of Raptor Research 42(3):188–196. http://www.bioone.org/doi/abs/10.3356/JRR-07-15.1</a >

Talley, T. S., D. Wright D, and M. Holyoak. 2006. Assistance with the 5-Year Review of the Valley elderberry longhorn beetle (Desmocerus californicus dimorphus). United States Fish and Wildlife Service, Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Talley%20et%20al_2006_VELB_5yr_review_Assistance.pdf</a >

Talley, T. S., E. Fleishman, M. Holyoak, D. D. Murphy, and A. Ballard. 2007. Rethinking a rare species conservation strategy in an urban landscape: The case of the valley elderberry longhorn beetle. Biological Conservation 135:21–32. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Talley%20et%20al_2007_RareSpeciesConservation_VELB.pdf</a >

The Xerces Society for Invertebrate Conservation. 2018. A Petition to the Crotch Bumble Bee (Bombus crotchii), Franklin’s Bumble Bee (Bombus franklini), Suckley Cuckoo Bumble Bee (Bombus suckleyi), and Western Bumble Bee (Bombus occidentalis occidentalis) as Endangered under the California Endangered Species Act. Prepared for the California Fish and Game Commission. Sacramento, CA. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=161902&inline

U.S. Fish and Wildlife Service. 1999. Draft Recovery Plan for the Giant Garter Snake (Thamnophis gigas). Portland, OR. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/USFWS_1999_Draft%20Recovery%20Plan%20For%20The%20Giant%20Garter%20Snake.pdf</a >

U.S. Fish and Wildlife Service. 2002. Recovery Plan for the California Red-Legged Frog (Rana aurora draytonii). Portland, OR. https://www.iucn-amphibians.org/wp-content/uploads/2018/11/California-Red-legged-Frog-Recovery-Plan.pdf

U.S. Fish and Wildlife Service. 2005a. Recovery Plan for Vernal Pool Ecosystems of California and Southern Oregon. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/USFWS_2005a_VP_recovery_plan_CFS_VPFS_VPTS1.pdf</a >

U.S. Fish and Wildlife Service. 2005b. Revised Guidance on Site Assessments and Field Surveys for the California Red-legged Frog. August. Sacramento, CA: Ecological Services, Sacramento Field Office. https://petaluma.granicus.com/MetaViewer.php?view_id=3&meta_id=374368 – :~:text=Similar%20to%20the%201997%20Guidance%2C%20two%20procedures%20are,determine%20whether%20CRF%20are%20likely%20to%20be%20present.</a >.

U.S. Fish and Wildlife Service. 2006a. Valley Elderberry Longhorn Beetle (Desmocerus californicus dimorphus) 5-Year Review. September. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/USFWS_2006a_VELB%205-year%20review_FINAL.pdf</a >

U.S. Fish and Wildlife Service. 2006b. Giant Garter Snake (Thamnophis gigas). 5-Year Review: Summary and Evaluation. U.S. Fish and Wildlife Service, Sacramento Fish and Wildlife Office, Sacramento, California. September 2006. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/USFWS_2006b_GGS_5yr_Review.pdf</a >

U.S. Fish and Wildlife Service. 2007a. Vernal Pool Fairy Shrimp (Branchinecta lynchi) 5-year Review: Summary and Evaluation. U.S. Fish and Wildlife Service Sacramento Fish and Wildlife Office Sacramento, California. September. Available: https://corpora.tika.apache.org/base/docs/govdocs1/235/235385.pdf</a >.

U.S. Fish and Wildlife Service. 2007b. Vernal Pool Tadpole Shrimp (Lepidurus packardi) 5-Year Review: Summary and Evaluation. U.S. Fish and Wildlife Service Sacramento Fish and Wildlife Office Sacramento, California. September. Available: https://ecos.fws.gov/docs/tess/species_nonpublish/1126.pdf</a >.

U.S. Fish and Wildlife Service. 2012. Conservancy Fairy Shrimp (Branchinecta conservatio) 5-Year Review: Summary and Evaluation. U.S. Fish and Wildlife Service Sacramento Fish and Wildlife Office Sacramento, California. June. Available: https://ecos.fws.gov/docs/five_year_review/doc4012.pdf</a >.

U.S. Fish and Wildlife Service. 2015a. Revised Draft Recovery Plan for Giant Garter Snake (Thamnophis gigas). U.S. Fish and Wildlife Service, Pacific Southwest Region, Region 8. Sacramento, CA. Available: https://meridian.allenpress.com/jfwm/article-supplement/209660/pdf/042016-jfwm-029_s5</a >.

U.S. Fish and Wildlife Service. 2015b. Survey Guidelines for the Listed Large Branchiopods. May 31. U.S. Fish and Wildlife Service, Pacific Southwest Region, Region 8. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/USFWS_2015b_VernalPoolBranchiopodSurveyGuidelines_20150531.pdf</a >

U.S. Fish and Wildlife Service. 2017a. Framework for Assessing Impacts to the Valley Elderberry Longhorn Beetle (Desmocerus californicus dimorphus). U.S. Fish and Wildlife Service; Sacramento, California. 28 pp. May 2017. https://www.fws.gov/sites/default/files/documents/survey-guidelines-for-valley-elderberry-longhorn-beetle.pdf</a >.

U.S. Fish and Wildlife Service. 2017b. Recovery Plan for the Giant Garter Snake (Thamnophis gigas). U.S. Fish and Wildlife Service, Pacific Southwest Region, Sacramento, California. vii + 71 pp. Available: https://ecos.fws.gov/docs/recovery_plan/20170928_Signed Final_GGS_Recovery_Plan.pdf</a >.

U.S. Fish and Wildlife Service. 2017c. Recommended Buffer Zones for Human Activities around Nesting Sites of Bald Eagles in California and Nevada. December. Great Basin Region Migratory Birds Program. Available: https://www.fws.gov/cno/conservation/MigratoryBirds/pdf-files/USFWS_PacificSouthwestRegion_BaldEagle_NestBuffer.pdf</a >.

U.S. Fish and Wildlife Service. 2019a. Species Assessment and Listing Priority Assignment Form for Yellow-billed Cuckoo (Coccyzus americanus). September 10, 2019. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/USFWS_2019a_SpeciesAssessment_ListingPriorityForm.pdf</a >

U.S. Fish and Wildlife Service. 2019b. Pollinators. June 17. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/USFWS_2019_Pollinators_MonarchBF.pdf</a >

U.S. Fish and Wildlife Service. 2019c. Species Status Assessment for the Tricolored Blackbird (Agelaius tricolor). Version 1.1. Sacramento, CA. Prepared by U.S. Fish and Wildlife Service Sacramento Field Office, Sacramento, CA. Available: https://ecos.fws.gov/ServCat/DownloadFile/166302</a >.

U.S. Fish and Wildlife Service. 2020a. U.S. Fish and Wildlife Service Finds Endangered Species Act Listing for Monarch Butterfly Warranted but Precluded. Available: https://www.fws.gov/news/ShowNews.cfm?ref=u.s.-fish-and-wildlife-service-finds-endangered-species-act-listing-for-&_ID=36817</a >.

U.S. Fish and Wildlife Service. 2020b. Updated Eagle Nest Survey Guidance. Available: https://www.fws.gov/sites/default/files/documents/eagle-nest-survey-guidance-updated-protocol.pdf</a >. Accessed: March 24, 2021.

U.S. Fish and Wildlife Service. 2020c. Recommended Buffer Zones for Ground-based Human Activities around Nesting Sites of Golden Eagles in California and Nevada. October. Great Basin Region Migratory Birds Program. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/USFWS_2020c_PacificSouthwestRegion_GoldenEagle_NestBuffers_Oct_2020.pdf</a >

U.S. Fish and Wildlife Service. 2021. IPaC Resource List for the Project area. Obtained from the Information for Planning and Consultation (IPaC) website: https://ecos.fws.gov/ipac/</a >

U.S. Geological Survey. n.d. Bat Research in California. Available: https://www.usgs.gov/centers/werc/science/bat-research-california?qt-science_center_objects=0#qt-science_center_objects</a >.

Van Vuren, D., M. A. Ordenana, M. C. McGrann, and A. R. Berentsen. 2014. Managing California Ground Squirrels on Levees Using Habitat Modification. U.S. Department of Agriculture: National Wildlife Research Center Staff Publications. Available: https://digitalcommons.unl.edu/cgi/viewcontent.cgi?article=2787&context=icwdm_usdanwrc</a >.

Williams, D. F. 1986. Mammalian Species of Concern in California. California Department of Fish and Game Report 86-1. California Department of Fish and Game, Sacramento, CA. 112 pages. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=83760&inline</a >.

Yarnal, C. 2019. Best Management Practices for the Conservation of Western Pond Turtle Populations in California. Master Thesis. University of San Francisco. San Francisco, CA. Available: https://repository.usfca.edu/cgi/viewcontent.cgi?article=2149&context=capstone</a >.

Yolo Habitat Conservancy. 2018. Yolo Habitat Conservation Plan/Natural Community Conservation Plan. Final. April 2018. Available: https://www.yolohabitatconservancy.org/documents</a >.

Zeiner, D. C., W. F. Laudenslayer, Jr., and K. E. Mayer (eds.). 1988. California’s Wildlife. Volume I: Amphibians and Reptiles. California Statewide Wildlife Habitat Relationships System. Sacramento, CA: California Department of Fish and Game. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Zeiner_et_al_1988.pdf</a >

Zeiner, D. C., W. F. Laudenslayer, Jr., and K. E. Mayer (eds.). 1990a. California’s Wildlife. Volume II: Birds. California Statewide Wildlife Habitat Relationships System. Sacramento, CA: California Department of Fish and Game. Copyright protected. See introduction for more information. Available: Part 1: (https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Zeiner_et_al_1990a_birds_part1_shorebirds_waterfowl.pdf</a >); Part 2: (https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Zeiner_et_al_1990a_birds_part2_raptors.pdf</a >)

Zeiner, D. C., W. F. Laudenslayer, Jr., and K. E. Mayer (eds.). 1990b. California’s Wildlife. Volume III: Mammals. California Statewide Wildlife Habitat Relationships System. Sacramento, CA: California Department of Fish and Game. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch10_Wildlife/Zeiner_et_al_1990b_mammals.pdf</a >

Personal Communications

Davis, Brittany E. Environmental Program Manager. California Department of Water Resources. July 6, 2021—Email to John Spranza, Senior Ecologist/Regulatory Specialist, HDR, Sacramento, CA, and Mallory Bedwell, California Department of Water Resources. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch15_Ag_Forestry/Davis_DWR_PersComm_2021.pdf</a >

Chapter 11

Acierto, K. R., J. Israel, J. Ferreira, and J. Roberts. 2014. Estimating Juvenile Winter-Run and Spring-Run Chinook Salmon Entrainment onto the Yolo Bypass over a Notched Fremont Weir. California Fish and Game 100(4):630–639. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Acierto_etal_2014.%20Estimating%20juvenile%20winter-run%20and%20spring-run%20Chinook%20salmon%20entrainment%20onto%20the%20Yolo%20Bypass%20over%20a%20notc.pdf</a >

Acuña, S., D. Baxa, and S. Teh. 2012a. Sublethal Dietary Effects of Microcystin Producing Microcystis on Threadfin Shad, Dorosoma petenense. Toxicon 60(6):1191–1202. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Acuna_et_al_2012a_Sublethal_Dietary_Effects.pdf</a >

Acuña, S., D. Deng, P. Lehman, S. Teh. 2012b. Sublethal Dietary Effects of Microcystis on Sacramento Splittail, Pogonichthys macrolepidotus. Aquatic Toxicology 110-111: 1–8. doi: 10.1016/j.aquatox.2011.12.004. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Acuna_et_al_2012b_Sublethal_dietary_effects_of_Microcystis_Splittail.pdf</a >

Acuña, S., D. Baxa, P. Lehman, F. C. Teh, D. F. Deng, and S. Teh. 2020. Determining the exposure pathway and impacts of Microcystis on Threadfin shad, Dorosoma petenense, in San Francisco Estuary. Environmental Toxicology and Chemistry 39(4):787–798. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Acuna_et_al_2020_Determining_the_Exposure_Pathways.pdf</a >

Alpers, C., C. Eagles-Smith, C. Foe, S. Klasing, M. Marvin-DiPasquale, D. Slotton, and L. Winham-Myers. 2008. Mercury Conceptual Model. Sacramento (CA): Delta Regional Ecosystem Restoration Implementation Plan. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Alpers_et_al_2008_Sacramento-SJD%20Region.pdf</a >

American River Water Agencies. 2017. Modified Flow Management Standard Proposed Water-Right Terms and Conditions. Exhibit ARWA-502. November. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/PCWA/ARWA_308.pdf</a >.

Armor, C., R. Baxter, B. Bennett, R. Bruer, M. Chotkowski, P. Coulston, D. Denton, B. Herbold, W. Kimmerer, K. Larsen, M. Nobriga, K. Rose, T. Sommer, and M. Stacey. n.d. Interagency Ecological Program Synthesis of 2005 Work to Evaluate the Pelagic Organism Decline (POD) in the Upper San Francisco Estuary. Interagency Ecological Program, Sacramento, CA. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/swrcb/swrcb_armor2005.pdf</a >.

Arthur, J. F., M. D. Ball, and S. Y. Baughman. 1996. Summary of Federal and State Water Project Environmental Impacts in the San Francisco Bay-Delta Estuary, California. In The San Francisco Bay: The Ecosystem, edited by J. T. Hollibaugh, 445–495. Seventyfifth annual meeting of the Pacific Division, American Association for the Advancement of Science. Held at San Francisco State University, June 19–24, 1994. San Francisco, CA. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Arthur_etal_1996_Summary_Fed_State_Environ_Impacts_SF_Bay_Delta.pdf</a >

Azat, J. 2021. GrandTab 2021.06.30. California Central Valley Chinook Population Database Report. California Department of Fish and Wildlife. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=84381</a >.

Bartholomew, J. L. 2012. 3.2.4 Salmonid ceratomyxosis. AFS-FHS (American Fisheries Society-Fish Health Section). FHS Blue Book: Suggested Procedures for the Detection and Identification of Certain Finfish and Shellfish Pathogens, 2014 Edition. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Bartholomew_2012_Ceratomyxosis.pdf</a >

Baxter, R., K. Hieb, S. DeLeón, K. Fleming, and J. Orsi. 1999. Report on the 1980-1995 fish, shrimp, and crab sampling in the San Francisco Estuary, California. Interagency Ecological Program for the Sacramento-San Joaquin Estuary, Technical Report 63, California Department of Fish and Game, Stockton, CA, 503 p. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/baxter_dfg_1999.pdf</a >.

Baxter, R., R. Breuer, L. Brown, M. Chotkowski, F. Feyrer, M. Gingras, B. Herbold, A. Mueller-Solger, M. obriga, T. Sommer, and K. Souza. 2008. Pelagic Organism Decline Progress Report: 2007 Synthesis of Results. Technical Report 227. Interagency Ecological Program for the San Francisco Estuary. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/srcsd/baxterreport.pdf</a >.

Baxter, R., R. Breuer, L. Brown, L. Conroy, F. Feyrer, S. Fong, K. Gehrts, L. Grimaldo, B. Herbold, P. Hrodey, A. Mueller-Solger, T. Sommer, and K. Souza. 2010. Pelagic Organism Decline Work Plan and Synthesis of Results. Interagency Ecological Program for the San Francisco Estuary. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/FOTR/for_60.pdf</a >.

Beamesderfer, R., M. Simpson, G. Kopp, J. Inman, A. Fuller, and D. Demko. 2004. Historical and Current Information on Green Sturgeon Occurrence in the Sacramento and San Joaquin Rivers and Tributaries. Prepared by for State Water Contractors, Sacramento, CA. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1130 Beamesderfer_et_al_2004_green_sturgeon_spawning_locations.pdf</a >.

Beckon, W.N., and T.C. Maurer. 2008. Potential Effects of Selenium Contamination on Federally Listed Species Resulting from Delivery of Federal Water to the San Luis Unit. U.S. Fish and Wildlife Service. Sacramento Fish and Wildlife Office. Environmental Contaminants Division. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/cwin/cwin_exh25.pdf – :~:text=Selenium%20concentrations%20in%20agricultural%20drainwater%20from%20this%20area,strictly%20terrestrial%20wildlife%20may%20be%20impacted%20as%20well.</a >.

Beckvar, N., T. M. Dillon, and L. B. Read. 2005. Approaches for linking whole‐body fish tissue residues of mercury or DDT to biological effects thresholds. Environmental Toxicology and Chemistry: An International Journal 24(8):2094–2105. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Beckvar_et_al_2005_Approaches_for_Linking_ddt_residue-effects_in_fish_beckvardillon.pdf</a >

Bedsworth, L., D. Cayan, G. Franco, L. Fisher, and S. Ziaja. 2018. Statewide Summary Report. California’s Fourth Climate Change Assessment. Publication number: SUMCCCA4-2018-013. Available: energy.ca.gov/sites/default/files/2019-11/Statewide_Reports-SUM-CCCA4-2018-013_Statewide_Summary_Report_ADA.pdf

Bellido-Leiva, F., R. A. Lusardi, and J. R. Lund. 2021. Modeling the Effect of Habitat Availability and Quality on Endangered Winter-Run Chinook Salmon (Oncorhynchus tshawytscha) Production in the Sacramento Valley. Ecological Modelling 447. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Bellido-Leiva_et_al_2021.pdf

Bennett, W. A. 2005. Critical Assessment of the Delta Smelt Population in the San Francisco Estuary, California. San Francisco Estuary and Watershed Science 3: Article 1. Available: https://watershed.ucdavis.edu/sites/g/files/dgvnsk8531/files/products/2021-11/eScholarship UC item 0725n5vk.pdf</a >.

Bennett, W. A., and J. R. Burau. 2015. Riders on the Storm: Selective Tidal Movements Facilitate the Spawning Migration of Threatened Delta Smelt in the San Francisco Estuary. Estuaries and Coasts 38(3):826–835. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Bennett&Burau_2015_Riders-storm.pdf</a >

Bennett, W. A., J. A. Hobbs, and S. J. Teh. 2008. Interplay of Environmental Forcing and Growth-Selective Mortality in the Poor Year Class Success of Delta Smelt in 2005. Final Report. Fish Otolith and Condition Study 2005. Prepared for the Pelagic Organism Decline Management Team. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/bennett_etal_2008.pdf</a >.

Bever, A. and M. MacWilliamson. 2018. Evaluation of Sedimentation in the Low Salinity Zone. Presented to the California Water and Environmental Modeling Forum 2018 Annual Meeting, April 2018. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Bever_2018_Evaluation%20of%20Sediment%20Supplementation%20in%20the%20Low%20Salinity%20Zone.%20Presentation%20at%20the%202018%20California%20Water%20and%20Environmental%20Modeling%20Forum%20Annual%20Meeting.pdf</a >

Blake, A., and M. J. Horn. 2004. Acoustic Tracking of Juvenile Chinook Salmon Movement in the Vicinity of the Delta Cross Channel, Sacramento River, California – 2001 Study Results. Draft report. United States Geological Survey. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/nmfs/spprt_docs/nmfs_exh4_horn_blake_2004.pdf

Blake, A., P. Stumpner, and J. Burau. 2017. A Simulation Method for Combining Hydrodynamic Data and Acoustic Tag Tracks to Predict the Entrainment of Juvenile Salmonids onto the Yolo Bypass under Future Engineering Scenarios. July 21. West Sacramento, CA: U.S. Geological Survey. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Blake_et_al_2017_Simulation_Combining_..pdf</a >

Bovee, K. D., Lamb, B. L., Bartholow, J. M., Stalnaker, C. B. and Taylor, J. 1998. Stream Habitat Analysis Using the Instream Flow Incremental Methodology. Geological Survey, Reston, VA. Biological Resources Div. Available: https://apps.dtic.mil/sti/tr/pdf/ADA361209.pdf

Brandl, S., B. Schreier, J. L. Conrad, B. May, and M. Baerwald. 2021. Enumerating Predation on Chinook Salmon, Delta Smelt, and Other San Francisco Estuary Fishes Using Genetics. North American Journal of Fisheries Management 41(4):1053–1065. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Brandl%20et%20al_2021_Enumerating%20Predation%20on%20Chinook%20Salmon.pdf</a >

Bratovich, P., J. Weaver, C. Addley, and C. Hammersmark. 2017. Lower American River. Biological Rationale, Development and Performance of the Modified Flow Management Standard. Exhibit ARWA-702. Prepared for Water Forum. Sacramento, CA. Available: https://waterforum.org/wp-content/uploads/2017/12/ARWA-702-Biological-Rationale-Development-and-Performance-of-the-Modified-Flow-Management-Standard-00023990xE2E14.pdf</a >.

Brege, D. A., L. G. Gilbreath, R. A. Absolon, B. J. Sandford, and G. M. Matthews. 2005. Studies to Evaluate the Effectiveness of Extended-Length Screens at John Day Dam, 2004. October. Seattle, WA: National Marine Fisheries Service, Northwest Fisheries Science Center, Fish Ecology Division. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626523.pdf</a >.

Brooks, M. L., E. Fleishman, L. R. Brown, P. W. Lehman, I. Werner, N. Scholz, C. Mitchelmore, J. R. Lovvorn, M. L. Johnson, D. Schlenk, and S. van Drunick. 2012. Life Histories, Salinity Zones, and Sublethal Contributions of Contaminants to Pelagic Fish Declines Illustrated with a Case Study of San Francisco Estuary, California, USA. Estuaries and Coasts 35(2):603–621. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626546.pdf</a >.

Brown, C. J. 2000. North of the Delta Offstream Storage Investigation Progress Report. Appendix D: Fish Survey Summary. Assisted by W. Yip, G. Gorden, G. Low, and A. Scholzen. CALFED Bay-Delta Program. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Brown_2000_NOD_Storage_Investigations.pdf</a >

Brown, L., and P. Moyle. 2005. Native Fishes of the Sacramento–San Joaquin Drainage, California: A History of Decline. American Fisheries Society Symposium 45:75–98. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Brown%20and%20Moyle%202005.%20Native%20fishes%20Sac-SJ%20Drainage.pdf</a >

Brown, L. R., and D. Michniuk. 2007. Littoral Fish Assemblages of the Alien dominated Sacramento–San Joaquin Delta, California 1980–1983 and 2001–2003. Estuaries and Coasts 30: 186–200. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Brown&Michniuk_2007_LittoralFish.pdf</a >

Brown, R., B. Cavallo, and K. Jones. 2004. The Effects of the Feather River Hatchery on Naturally Spawning Salmonids. Oroville Facilities Relicensing (FERC Project Number 2100). Draft Report SP-F9. Prepared by California Department of Water Resources, Sacramento, California, and Pacific States Marine Fisheries Commission, Portland, OR. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Brown_et_al_2004_Oroville%20FERC%20Study%209%20(Feather%20River%20Hatchery).pdf</a >

Buchanan, R. A., and J. R. Skalski. 2020. Relating Survival of Fall-Run Chinook Salmon through the San Joaquin Delta to River Flow. Environmental Biology of Fishes 103(5):389–410. doi: https://doi.org/10.1007/s10641-019-00918-y</a >. Copyright protected. See introduction for more information.

Buchanan, R. A., E. Buttermore, and J. Israel. 2021. Outmigration Survival of a Threatened Steelhead Population through a Tidal Estuary. Canadian Journal of Fisheries and Aquatic Sciences 78:1869–1886. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Buchanan%20et%20al_2021_Threatened%20Steelhead%20Population.pdf</a >

Burau, J. R., S. G. Monismith, M. T. Stacey, R. N. Oltmann, J. R. Lacy, and D. H. Schoellhamer. 2000. Recent research on the hydrodynamics of the Sacramento-San Joaquin River Delta and North San Francisco Bay. IEP Newsletter 13(2): 45-55. Interagency Ecological Program for the Sacramento-San Joaquin Estuary, Sacramento, California. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/ccwd/spprt_docs/ccwd_burau_etal_1999.pdf</a >. Accessed: May 19, 2021

Burau, J., A. Blake, and R. Perry. 2007. Sacramento/San Joaquin River Delta Regional Salmon Outmigration Study Plan: Developing Understanding for Management and Restoration. Draft. December 10. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/nmfs/spprt_docs/nmfs_exh4_burau_etal_2007.pdf</a >.

Bureau of Reclamation. 2003. Ecosystem Restoration Opportunities in the Upper Sacramento River Region. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Bureau%20of%20Recl_2003_Eco.pdf</a >

Bureau of Reclamation. 2005. Lake Natoma Temperature Curtain and Channel Modification Study, 2001–2002. Hydraulic Laboratory Report HL-2005-02. Available: https://www.usbr.gov/tsc/techreferences/hydraulics_lab/pubs/HL/HL-2005-02.pdf</a >.

Bureau of Reclamation. 2008a. Biological Assessment on the Continued Long-Term Operations of the Central Valley Project and the State Water Project. Bureau of Reclamation Mid-Pacific Region, Sacramento, CA. August. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626170.pdf</a >.

Bureau of Reclamation. 2008b. North-of-the-Delta Offstream Storage Investigation Plan Formulation Report. September. http://s3-us-west-2.amazonaws.com/ucldc-nuxeo-ref-media/6a8b0fb3-c504-48cc-86f4-623d280d0ee0

Bureau of Reclamation. 2010a. CVPIA Sacramento River Spawning Gravel Addition Project at Keswick Dam, Categorical Exclusion Checklist. October 5. Available: https://www.usbr.gov/mp/nepa/includes/documentShow.php?Doc_ID=8087</a >.

Bureau of Reclamation. 2010b. Folsom General Plan/Resource Management Plan: Folsom Lake Recreation Area and Folsom Powerhouse State Historic Park. Available: https://ohp.parks.ca.gov/pages/21299/files/folsom gp-rmp–vol. 1–part i–cover and table of contents.pdf</a >.

Bureau of Reclamation. 2014. Shasta Lake Water Resources Investigation, California. Final Environmental Impact Statement. June. Available: https://www.usbr.gov/mp/nepa/nepa_project_details.php?Project_ID=1915</a >.

Bureau of Reclamation. 2019. Reinitiation of Consultation on the Coordinated Long-Term Operation of the Central Valley Project and State Water Project. Final Biological Assessment. January. Mid-Pacific Region, Bureau of Reclamation. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Bureau%20of%20Recl_2019_Reinitiation%20of%20Consultation%20on%20the%20Coordinated%20Long-Term%20Operation%20of%20the%20Central%20Valley%20Project%20and%20State%20Water%20Project.pdf</a >

Bureau of Reclamation. 2020. Annual Report on the Long-Term Operation of the Central Valley Project and State Water Project for Water Year 2020. Central Valley Project, California-Great Basin Region. December. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Bureau%20of%20Recl_2020_LTO%20Annual%20Report.pdf</a >

Bureau of Reclamation and California Department of Fish and Game. 2011. Final Environmental Impact Statement/Environmental Impact Report for the Nimbus Hatchery Fish Passage Project. Available: usbr.gov/mp/nepa/includes/documentShow.php?Doc_ID=8063

Bureau of Reclamation and California Department of Water Resources. 2019. Yolo Bypass Salmonid Habitat Restoration and Fish Passage Final Environmental Impact Statement/Environmental Impact Report. May. Available: https://www.usbr.gov/mp/nepa/nepa_project_details.php?Project_ID=30484</a >. Accessed June 30, 2023.

Bureau of Reclamation, California Department of Water Resources, U.S. Fish and Wildlife Service, National Marine Fisheries Service, and California Department of Fish and Game. 2003. Environmental Water Account Draft Environmental Impact Statement/Environmental Impact Report. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/USBR_et_al_2003_Environmental_Water_Account_DEIS_DEIR.pdf</a >

Bureau of Reclamation, U.S. Fish and Wildlife Service, National Marine Fisheries Service, California Department of Fish and Game, and Water Forum. 2006. Lower American River Flow Management Standard. Draft Report. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/USBR_et_al_2006_LAR_Flow-Management-Standard.pdf</a >

Bush, E. E. 2017. “Migratory Life Histories and Early Growth of the Endangered Estuarine Delta Smelt (Hypomesus transpacificus).” MS Thesis. University of California, Davis. Davis, CA. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2_rebuttal/dwr_1268.pdf</a >.

Cain, J. and C. Monohan, 2008. Estimating Ecologically Based Flow Targets for the Sacramento and Feather Rivers. April. The Natural Heritage Institute. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1126 Cain_and_Monohan_2008_Sacramento-and-Feather-Env-Flows-Doc_April2008.pdf</a >.

CALFED Bay-Delta Program. 1999. Ecosystem Restoration Program Plan – Volume II: Ecological Management Zone Visions. Final Programmatic EIS/EIR Technical Appendix. Sacramento, CA.

CALFED Bay-Delta Program. 2000. Ecosystem Restoration Program Plan. Volume I: Ecological Attributes of the San Francisco Bay-Delta Watershed. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/CALFED_2000_Ecosystem%20Restoration%20Program%20Plan%20Vol%202%20-%20Ecological%20Management.pdf</a >

California Department of Fish and Game. 1992. A Re-examination of Factors Affecting Striped Bass Abundance in the Sacramento-San Joaquin Estuary. WRINT-DFG-Exhibit 2. Entered by the California Department of Fish and Game for the State Water Resources Control Board 1992 Water Rights Phase of the Bay-Delta Estuary Proceedings. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/CDFG_1992_Factors_Affecting_Striped_Bass_Abundance.pdf</a >

California Department of Fish and Game. 2003. Fisheries Studies at Stony Creek, Thomes Creek, Sites Newville Projects, and Colusa Basin Drain Report. California Department of Fish and Game, Central Valley Bay-Delta Branch. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/CDFG_2003_Fish%20Studies.pdf</a >

California Department of Fish and Game. 2008. California Aquatic Invasive Species Management Plan. January. Available: https://wildlife.ca.gov/Conservation/Invasives/Plan</a >. Accessed: May 14, 2012.

California Department of Fish and Game. 2009. California Endangered Species Act Incidental Take Permit No. 2081-2009-001-03. Department of Water Resources California State Water Project Delta Facilities and Operations. Yountville, CA: California Department of Fish and Game, Bay Delta Region. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/CDFG_2009_CA_ESA_ITP_No2081_2009_001_03.pdf</a >

California Department of Fish and Wildlife. 2018. Franks Tract Future? Exploring options for Multi-Benefit Restoration and Increased Resilience in the Central Delta Corridor. June 2018. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=159294&inline</a >.

California Department of Fish and Wildlife. 2020. California Endangered Species Act Incidental Take Permit No. 2081-2019-066-00. Long-Term Operation of the State Water Project in the Sacramento San Joaquin Delta. Sacramento, CA: California Department of Fish and Game, Ecosystem Conservation Division. https://water.ca.gov/-/media/DWR-Website/Web-Pages/Programs/State-Water-Project/Files/ITP-for-Long-Term-SWP-Operations.pdf</a >

California Department of Fish and Wildlife. 2022. California Central Valley Chinook Escapement Database Report. GrandTab 2022.07.20. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=84381&inline</a >. Accessed: January 13, 2023. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/CDFW_2022_CCVChinookEscapementDBReport.pdf</a >

California Department of Transportation. 2015. Technical Guidance for Assessment and Mitigation of the Hydroacoustic Effects of Pile Driving on Fish. California Department of Transportation, Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Caltrans_2015_bio-tech-guidance-hydroacoustic-effects.pdf</a >

California Department of Water Resources. 1985. Sacramento River Spawning Gravel Studies, Executive Summary. June. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/DWR%201985%20Sacramento%20River%20Spawning%20Gravel%20Studies.pdf</a >

California Department of Water Resources. 1994. Sacramento River Bank Erosion Investigation. Memorandum Progress Report. September 23. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/DWR_1994_Sacramento_River_Bank_Erosion.pdf</a >

California Department of Water Resources. 2004. Evaluation of Project Effects on Instream Flows and Fish Habitat. SP F-16 Phase 2 Report. Oroville Facilities Relicensing, FERC Project No. 2100. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/CDWR_2004_SP-F16%20Phase%202%20Report.pdf</a >

California Department of Water Resources. 2005. Bulletin 250. Fish Passage Improvement: An Element of CALFED’s Ecosystem Restoration Program. 263 pp. Available from https://cawaterlibrary.net/wp-content/uploads/2017/05/CalFed-Fish-Passage-Report.pdf</a >.

California Department of Water Resources. 2006. Settlement Agreement for Licensing of the Oroville Facilities. FERC Project No. 2100. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/water_quality_cert/docs/oroville_ferc2100/oroville2006settlementagreement.pdf</a >. Accessed April 1, 2021.

California Department of Water Resources. 2007. Oroville Facilities Relicensing FERC Project No. 2100 Draft Environmental Impact Report. May. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/DWR_2007_Oroville.pdf</a >

California Department of Water Resources. 2010. State Plan of Flood Control Descriptive Document. Available: https://h8b186.p3cdn2.secureserver.net/wp-content/uploads/2017/05/SPFC_Descriptive_Doc_20100115.pdf</a >.

California Department of Water Resources. 2016. Biological Assessment for the California WaterFix. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/exhibit104/docs/1_Cover_TitlePage_TOC_RevisedDraftBA.pdf</a >. Accessed: July 27, 2021.

California Department of Water Resources. 2017. Evaluating Adult Salmonid and Sturgeon Passage Potential for Multiple Modified Fremont Weir Configurations: Application of the Yolo Bypass Passage for Adult Salmonid and Sturgeon (YBPASS) Tool. Technical memorandum for the Yolo Bypass Salmonid Habitat Restoration and Fish Passage Project. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/CDWR_2017_Eval_Adult_Salmonid_Sturgeon_Passage.pdf</a >

California Department of Water Resources. 2018. Draft Work Plan for Monitoring and Assessment of Proposed Suisun Marsh Salinity Control Gates Action, 2019. West Sacramento, CA: California Department of Water Resources, Division of Environmental Sciences. June 3.

California Department of Water Resources. 2019a. California EcoRestore Projects. https://water.ca.gov/Programs/All-Programs/EcoRestore#</a >.

California Department of Water Resources. 2019b. North Delta Flow Action Study – 2019 Operation Plan, May 2019. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/CDWR_2019b_North_Delta_Flow_Action_Study.pdf</a >

California Department of Water Resources. 2019c. California Data Exchange Center. Available: http://cdec.water.ca.gov/jspplot/jspPlotServlet.jsp?sensor_no=17305&end=10%2F01%2F2018+21%3A28&geom=huge&interval=60&cookies=cdec01</a >.

California Department of Water Resources. 2019d. Incidental Take Permit Application for Long-Term Operation of the California State Water Project. December 13. Available: https://water.ca.gov/-/media/DWR-Website/Web-Pages/Programs/State-Water-Project/Files/1_DWR_LTO_ITP_Application_2019-12-13_a_y19.pdf</a >

California Department of Water Resources. 2020. Final Environmental Impact Report for Long-term Operation of the California State Water Project. State Clearinghouse No. 2019049121. March. Available: https://water.ca.gov/News/Public-Notices/2020/March-2020/Final-EIR-for-SWP-Operations</a >.

California Department of Water Resources. 2021. California Data Exchange Center. Available: https://cdec.water.ca.gov/rtables</a >.

California Department of Water Resources. 2023. California EcoRestore. Available: https://water.ca.gov/Programs/All-Programs/EcoRestore</a >.

California Department of Water Resources and Environmental Science Associates. 2020. Tisdale Weir Rehabilitation and Fish Passage Project Draft Environmental Impact Report. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/CDWR_2020_LTO_SWP_FEIR-EIS.pdf</a >

California Department of Water Resources, Bureau of Reclamation, U.S. Fish and Wildlife Service, and National Marine Fisheries Service. 2013. Environmental Impact Report/Environmental Impact Statement for the Bay Delta Conservation Plan. Chapter 11, Fish and Aquatic Resources. Draft. December.

California Hatchery Scientific Review Group. 2012. California Hatchery Review Report. Prepared for the U.S. Fish and Wildlife Service and Pacific States Marine Fisheries Commission. June. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/CDWR_ESA_2020_Tisdale_Weir_DEIR_Report.pdf</a >

California Natural Resources Agency. 2016. Delta Smelt Resiliency Strategy – July 2016. Available: https://resources.ca.gov/CNRALegacyFiles/docs/Delta-Smelt-Resiliency-Strategy-FINAL070816.pdf</a >.

California Natural Resources Agency. 2017. Delta Smelt Resiliency Strategy – Progress Report, June 2017. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2_rebuttal/dwr_1235.pdf</a >.

Castillo, G., J. Morinaka, J. Lindberg, R. Fujimura, B. Baskerville-Bridges, J. Hobbs, G. Tigan, L. Ellison. 2012. Pre-screen Loss and Fish Facility Efficiency for Delta Smelt at the South Delta’s State Water Project, California. San Francisco Estuary and Watershed Science 10(4). Available: https://escholarship.org/content/qt28m595k4/qt28m595k4_noSplash_8a8a93645e932a9214b4d7aabb20057d.pdf?t=q5a12g</a >.

Cavallo, B., R. Brown, and D. Lee. 2009. Hatchery and Genetic Management Plan for Feather River Hatchery Spring-run Chinook Salmon Program. June. Auburn, California: Cramer Fish Sciences. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Cavallo%20et%20al%202009%20.pdf</a >

Cavallo, B., J. Merz, and J. Setka. 2012. Effects of Predator and Flow Manipulation on Chinook Salmon (Oncorhynchus tshawytscha) Survival in an Imperiled Estuary. Environmental Biology of Fishes 96(2–3): 393–403. doi. 10.1007/s10641-012-9993-5 Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Cavallo_et_al_2012_Effects_of_predator_and_flow_Chinook.pdf</a >

Cavallo, B., P. Gaskill, J. Melgo, and S.C. Zeug. 2015. Predicting juvenile Chinook Salmon routing in riverine and tidal channels of a freshwater estuary. Environmental Biology of Fishes 98(6):1571–1582. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/CavalloEtAl_2015_pred-juv-CHN-routing.pdf</a >

Chapman, E. D., A. R. Hearn, C. J. Michel, A. J. Ammann, S. T. Lindley, M. J. Thomas, P. T. Sandstrom, G. P. Singer, M. L. Peterson, R. B. MacFarlane, and A. P. Klimley. 2013. Diel Movements of Out-migrating Chinook Salmon (Oncorhynchus tshawytscha) and Steelhead Trout (Oncorhynchus mykiss) Smolts in the Sacramento/San Joaquin Watershed. Environmental Biology of Fishes 96(2-3):273–286. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Chapman_et_al_2013_Diel_movements_of_outmigrating_Chinook_salmon_Onc.pdf</a >

Clark, K. W., M. D. Bowen, R. B. Mayfield, K. P. Zehfuss, J. D. Taplin, and C. H. Hanson. 2008. Quantification of Pre-Screen Loss of Juvenile Steelhead in Clifton Court Forebay. March. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/srcsd/juvisteelheadlossquantification.pdf</a >.

Colborne, S. F., L. W. Sheppard, D. R. O’Donnell, D. C. Reuman, J. A. Walter, G. P. Singer, J. T. Kelly, M. J. Thomas, and A. L. Rypel. 2022. Intraspecific Variation in Migration Timing of Green Sturgeon in the Sacramento River System. Ecosphere 2022;13e4139. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Colborne%20et%20al_2022_Migration%20Timing%20of%20Green%20Sturgeon.pdf</a >

Columbia Basin Research. 2020. SacPAS CDFW GrandTab Adult Escapement. University of Washington. Available: http://www.cbr.washington.edu/sacramento/data/query_adult_grandtab.html</a >.

Conrad, J. L., A. J. Bibian, K. L. Weinersmith, D. De Carion, M. J. Young, P. Crain, E. L. Hestir, M. J. Santos, and A. Sih. 2016. Novel Species Interactions in a Highly Modified Estuary: Association of Largemouth Bass with Brazilian Waterweed Egeria densa. Transactions of the American Fisheries Society 145(2):249–263. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Conrad_etal_2016_Novel_Species_Interactions-LMBass-Egeria.pdf</a >

Connon, R. E., S. Beggel, L. S. D’Abronzo, J. P. Geist, J. Pfeiff, A. V. Loguinov, C. D. Vulpe, and I. Werner. 2011. Linking molecular biomarkers with higher level condition indicators to identify effects of copper exposures on the endangered delta smelt (Hypomesus transpacificus). Environmental Toxicology and Chemistry 30(2):290–300. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Connon_et_al_2011_Linking_molecular_biomarkers_with_higher.pdf</a >

Cordoleani, F., E. Holmes, and C. Jeffres. 2020. Evaluating the Role(s) of the Butte Sink and Sutter Bypass for Butte Creek Spring- Run Chinook Salmon and Other Central Valley Juvenile Salmonid Populations – 2019 Study Year. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Cordoleani%20et%20al_2020_Evaluating%20Roles_Central%20Valley%20Juvenile%20Salmonid%20Populations.pdf</a >

Cramer, S. P., D. B. Demko, C. G. Chapman, M. L. Simpson, and G. J. R. Kopp. 2005. Potential Fish Benefits from Screens or Screening Modifications at Sutter Mutual Water Company, Reclamation District 108, and M&T Ranch/Llano Seco. Technical Memorandum. S.P. Cramer & Associates. June 29. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Cramer_et_al_2005_Fish_Benefits_Screening_Sutter_Mutual_Water_Co.pdf</a >

Cramer Fish Sciences. 2016. Coleman National Fish Hatchery Adaptive Management Plan. Public Review Draft, March 1. Prepared for Bureau of Reclamation, Mid-Pacific Region. Auburn, CA. Available: https://usbr.gov/mp/battlecreek/docs/cnfh-amp-final-nov2016.pdf</a >.

Cunningham, C., N. Hendrix, E. Dusek-Jennings, R. Lessard, and R. Hilborn. 2015. Delta Chinook Final Report to the Delta Science Panel. Available: https://www.researchgate.net/publication/283055052_Delta_Chinook_Final_Report</a >.

Dahm, C. N., A. E. Parker, A. E. Adelson, M. A. Christman, and B. A. Bergamaschi. 2016. Nutrient Dynamics of the Delta: Effects on Primary Producers. San Francisco Estuary and Watershed Science 14(4). Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Dahm%20et%20al_2016_NutrientDynamics.pdf</a >

David Evans and Associates, Inc., MWH Americas, Inc., and R2 Resource Consultants. 2007. Clean Water Services Tualatin Basin Water Supply Project. Fish Habitat, Draft Technical Report. Portland, OR. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/DEA_et.%20al._2007_IFIM%20Revised%20TBWSP%20Draft%20Fish%20Habitat%20TR%20071206.pdf</a >

Davis, B., M. Bedwell, H. Wright, and J. Martinez. 2019. North Delta Flow Action 2019: Delta Smelt and Salmonids Report. California Department of Water Resources. Available: https://www.baydeltalive.com/assets/5c92b61032e1bfd2c6a30d4ee74773aa/application/pdf/North_Delta_Food_Web_Study_Fact_Sheet_06272019.pdf</a >.

Delaney, D., P. Bergman, B. Cavallo, and J. Melgo. 2014. Stipulation Study: Steelhead Movement and Survival in the South Delta with Adaptive Management of Old and Middle River Flows. Prepared under the direction of Kevin Clark, Bay-Delta Office, Biotelemetry and Special Investigations Unit. California Department of Water Resources. Available: https://agupubs.onlinelibrary.wiley.com/doi/epdf/10.1029/2005WR004050</a >.

Dinehart, R. L., and J. R. Burau. 2005. Averaged Indicators of Secondary Flow in Repeated Acoustic Doppler Current Profiler Crossings of Bends. Water Resources Research 41(9):W09405. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Dinehart_Burau_2005_Averaged%20indicators%20of%20secondary%20flow%20in%20repeated%20acoustic%20Doppler%20current%20profiler%20crossings%20of%20bends_Water_Resources_Research1.pdf</a >

Dugdale, R. C., F. P. Wilkerson, V. E. Hogue, and A. Marchi. 2007. The Role of Ammonium and Nitrate in Spring Bloom Development in San Francisco Bay. Estuarine, Coastal and Shelf Science 73:17–29. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/dugdale_etal_2007.pdf</a >.

East Bay Municipal Utility District. 2012. Mokelumne River hatchery fish information received by Jose Setka, Fisheries and Wildlife Division. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/EBMUD_2012_Mokelumne_River_Hatchery_Info1.pdf</a >

Edmunds, J. L., K. M. Kuivila, B. E. Cole, and J. E. Cloern. 1999. Do Herbicides Impair Phytoplankton Primary Production in the Sacramento-San Joaquin River Delta? In Proceedings of the Technical Meeting: Toxic Substances Hydrology Program. Volume 2: Contamination of Hydrologic Systems and Related Ecosystems. U.S. Geological Survey Water Resources Investigation Report 99.4018B. Available: https://ca.water.usgs.gov/archive/reports/wrir994018/Edmunds.pdf

Engle, J., C. Enos, K. McGourty, T. Porter, B. Reed, J. Scammell-Tinling, K. Schaeffer, S. Siegel, and E. Crumb. 2010. Suisun Marsh Tidal Marsh and Aquatic Habitats Conceptual Model. Chapter 2: Aquatic Environment. Final Review Draft. Suisun Marsh Habitat Management, Restoration, and Preservation Plan. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Engle_et_al_2010_Suisun_Tidal_Marsh_Conceptual_Model1.pdf</a >

Enos, C., J. Sutherland, and M. L. Nobriga. 2007. Results of a Two Year Fish Entrainment Study at Morrow Island Distribution System in Suisun Marsh. IEP Newsletter 20(1): 10-19. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Enos_et_al_2007_Results%20of%20a%20Two%20Year%20Fish%20Entrainment%20Study%20at%20MIDS_IEP_Newsletter1.pdf</a >

Federal Energy Regulatory Commission. 2007. Final Environmental Impact Statement for Hydropower License, Oroville Facilities, FERC Project No. 2100-052, California. https://catalog.gpo.gov/F/?func=direct&doc_number=000601828&format=999

Ferrari, M. C., L. Ranåker, K. L. Weinersmith, M. J. Young, A. Sih, and J. L. Conrad. 2014. Effects of Turbidity and an Invasive Waterweed on Predation by Introduced Largemouth Bass. Environmental Biology of Fishes 97(1):79–90. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Ferrari_etal_2013_Effects%20of%20Turbidity%20and%20an%20Invasive%20Waterweed%20on%20Predation%20by%20Introduced%20Largemouth%20Bass.pdf</a >

Feyrer, F., B. Herbold, S. A. Matern, and P. B. Moyle. 2003. Dietary Shifts in a Stressed Fish Assemblage: Consequences of a Bivalve Invasion in the San Francisco Estuary. Environmental Biology of Fishes 67: 277–288. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/FeyrerEtAl_2003_dietaryshiftsstressedfish1.pdf</a >

Feyrer, R., T. R. Sommer, and R. D. Baxter. 2005. Spatial-Temporal Distribution and Habitat Associations of Age-0 Splittail in the Lower San Francisco Watershed. Copeia 2005(1):159–168. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1123 Feyrer_et_al_2005_splittail_distribution_age-0.pdf</a >.

Feyrer, F., Sommer, T., and W. Harrell. 2006a. Managing floodplain inundation for native fish: production dynamics of age-0 splittail (Pogonichthys macrolepidotus) in California’s Yolo Bypass. Hydrobiologia 573(1):213–226. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/swrcb/swrcb_feyrer2006.pdf</a >.

Feyrer, F., T. Sommer, and W. Harrell. 2006b. Importance of flood dynamics versus intrinsic physical habitat in structuring fish communities: evidence from two adjacent engineered floodplains on the Sacramento River, California. North American Journal of Fisheries Management 26:408–417. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/swrcb/swrcb_feyrer2006_2.pdf</a >.

Feyrer, F., M. L. Nobriga, and T. R. Sommer. 2007. Multi-decadal Trends for Three Declining Fish Species: Habitat Patterns and Mechanisms in the San Francisco Estuary, California, U.S.A. Canadian Journal of Fisheries and Aquatic Sciences 64:723–734. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/FeyrerEtAl_2007_Multi-decadal.pdf</a >

Feyrer, F., T. Sommer, and S. B. Slater. 2009. Old School vs. New School: Status of Threadfin Shad (Dorosoma petenense) Five Decades After Its Introduction to the Sacramento–San Joaquin Delta. San Francisco Estuary and Watershed Science 7(1). https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/FeyrerEtAl_2009_ThreadfinShad.pdf</a >

Feyrer F., J. Hobbs, and T. Sommer. 2010. Salinity Inhabited by Age-0 Splittail (Pogonichthys macrolepidotus) as Determined by Direct Field Observation and Retrospective Analyses with Otolith Chemistry [Online]. San Francisco Estuary and Watershed Science 8(2). Available: http://escholarship.org/uc/item/14j5160h</a >.

Feyrer, F, K. Newman, M. Nobriga, and T. Sommer. 2011. Modeling the Effects of Future Freshwater Flow on the Abiotic Habitat of an Imperiled Estuarine Fish. Estuaries and Coasts 34:120–128. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/0.7.115.6279-000002.pdf</a >.

Feyrer, F., K. Newman, M. Nobriga, and T. Sommer. 2015. Delta Smelt Habitat in the San Francisco Estuary: A Reply to Manly, Fullerton, Hendrix, and Burnham’s “Comments on Feyrer et al. Modeling the Effects of Future Outflow on the Abiotic Habitat of an Imperiled Estuarine Fish.” Estuaries and Coasts 39(1):287–289. Available: https://ca.water.usgs.gov/pubs/2015/FeyrerEtAl2015.pdf</a >.

Fish, M. A. 2010. A White Sturgeon Year-Class Index for the San Francisco Estuary and Its Relation to Delta Outflow. IEP Newsletter 23(2). Spring. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Fish%202010.%20White%20Sturgeon%20Year%20Class%20Index%20vs.%20Outflow_IEPNewsletter_FINAL_Spring.pdf</a >

Fisheries Hydroacoustic Working Group. 2008. Agreement in Principal for Interim Criteria for Injury to Fish from Pile Driving Activities. National Marine Fisheries Service Northwest and Southwest Regions, U.S. Fish and Wildlife Service Regions 1 and 8, California/Washington/Oregon Departments of Transportation, California Department of Fish and Game, and U.S. Federal Highway Administration. Memorandum to Applicable Agency Staff. June 12. Available: https://wsdot.wa.gov/sites/default/files/2021-10/ENV-FW-BA_InterimCriteriaAgree.pdf</a >.

Fong, S., S. Louie, I. Werner, J. Davis, and R. E. Connon. 2016. Contaminant Effects on California Bay–Delta Species and Human Health. San Francisco Estuary and Watershed Science 14(4). Available: http://www.escholarship.org/uc/item/52m780xj</a >.

Foott, J. S. 2014. Sacramento and Feather River Juvenile Chinook Pathogen Survey Spring 2014. U.S. Fish and Wildlife Service California – Nevada Fish Health Center, Anderson, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Foott_et_al_2014_Sac_Feather_Juv_Chinook_Pathogen_Survey_Spring.pdf</a >

Foott, J. S., R. Stone, S. Voss, and K. Nichols. 2017. Ceratonova shasta and Parvicapsula minibicornis (Phylum Cnidaria: Myxosporea) Infectivity for Juvenile Chinook Salmon (Oncorhynchus tshawytscha) in the Upper Sacramento River: July–November 2016. U.S. Fish and Wildlife Service California – Nevada Fish Health Center, Anderson, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Foott_et_al_2017_Ceratonova_Shasta_Parvicapsula_Minibicornis_Infectivity_Juv_Chinook_Upper_Sac.pdf</a >

Frantzich, J., T. Sommer, and B. Schreier. 2018. Physical and Biological Responses to Flow in a Tidal Freshwater Slough Complex. San Francisco Estuary and Watershed Science 16(1). Available: https://escholarship.org/content/qt6s50h3fb/qt6s50h3fb.pdf?t=q4i5u2</a >.

Frantzich, J., B. E. Davis, M. MacWilliams, A. Bever, and T. Sommer. 2021. Use of a Managed Flow Pulse as Food Web Support for Estuarine Habitat. San Francisco Estuary and Watershed Science 19(3). Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Frantzich%20et%20al_2021_Managed%20Flow%20Pulse.pdf</a >

Fris, M. B. and R. W. DeHaven. 1993. A Community-Based Habitat Suitability Index Model for Shaded Riverine Aquatic Cover, Selected Reaches of the Sacramento River System. February. U.S. Fish and Wildlife Service, Ecological Services. Sacramento Field Office. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Fris_and_DeHaven_1993_SRA_Cover.pdf</a >

Gahan, G., M. Healey, C. McKibbin, H. Kubo, and C. Purdy. 2016. Colusa Basin Drain and Wallace Weir Fish Trapping and Relocation Efforts. November 2013 – June 2014. California Department of Fish and Wildlife, North Central Region. August. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Gahan_et_al_2016_Colusa_Basin_Drain_Wallace_Weir_Trapping_Relocation.pdf</a >

Gingras, M. 1997. Mark/Recapture Experiments at Clifton Court Forebay to Estimate Pre-screening Loss to Juvenile Fishes, 1976-1993. Technical Report 55. Interagency Ecological Program for the San Francisco Bay/Delta Estuary. September. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentId=35431&inline</a >.

Glenn-Colusa Irrigation District. 2003. Fish Screen Project: long-term protection for fisheries. Brochure published by GCID. 4 pp. https://912afe62-5b11-482e-8c47-c2358db4f96b.filesusr.com/ugd/c88b6b_36f9a9e00f8942b8960ff2b404ebd0af.pdf</a >

Glenn-Colusa Irrigation District. 2017. Fish Screens—February 18, 2017. Available: https://www.youtube.com/watch?v=u_DOLE7QXa8</a >. Accessed: February 11, 2021.

Glibert, P. M., D. Fullerton, J. M. Burkholder, J. C. Cornwell, and T. M. Kana. 2011. Ecological Stoichiometry, Biogeochemical Cycling, Invasive Species, and Aquatic Food Webs: San Francisco Estuary and Comparative Systems. Reviews in Fisheries Science 19(4):358–417. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Glibert_et_al_2011_Ecological_Stoichiometry_Rev_Fish_Sci.pdf</a >

Glibert, P. M., F. P. Wilkerson, R. C. Dugdale, A. E. Parker, J. Alexander, S. Blaser, and S. Murasko. 2014. Phytoplankton communities from San Francisco Bay Delta respond differently to oxidized and reduced nitrogen substrates—even under conditions that would otherwise suggest nitrogen sufficiency. Frontiers in Marine Science 1(17):1–16. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Glibert%20et%20al_2014_Phytoplankton%20Communities.pdf</a >

Goodman, D. H., and S. B. Reid. 2012. Pacific Lamprey (Entosphenus tridentatus) Assessment and Template for Conservation Measures in California. U.S. Fish and Wildlife Service, Arcata, CA. Available: https://ifrmp.net/wp-content/uploads/2020/09/USFWS_2012_0526_Pacific-Lamprey-Entosphenus-tridentatus.pdf</a >.

Goodman, D. H., and S. B. Reid. 2022. Rapid Development of Larval Pacific Lamprey Entosphenus tridentatus in Southern Populations Provides Adaptive Benefits for Uncertain Flow Regimes. Environmental Biology of Fish. Available: https://doi.org/10.1007/s10641-022-01236-6</a >.

Goodman, D. H., S. B. Reid, N. A. Som, and W. R. Poytress. 2015. The punctuated seaward migration of Pacific lamprey (Entosphenus tridentatus): environmental cues and implications for streamflow management. Canadian Journal of Fisheries and Aquatic Sciences 72(12):1817–1828. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/GoodmanEtAl_2015_MigrationLamprey.pdf</a >

Goodman, D. H., Reid, S. B., Reyes, R. C., Wu, B. J., and B.B. Bridges. 2017. Screen efficiency and implications for losses of lamprey macrophthalmia at California’s largest water diversions. North American Journal of Fisheries Management, 37(1):30–40. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Goodman_et_al_2017_Screen%20Efficiency%20and%20Implications%20for%20Losses%20of%20Lamprey%20Macrophthalmia%20at%20California%20s%20Largest%20Water%20Diversions_NAJFM.pdf</a >

Gould, A., and W. J. Kimmerer. 2010. Development, Growth, and Reproduction of the Cyclopoid Copepod Limnoithona tetraspina in the Upper San Francisco Estuary. Marine Ecology Progress Series 412:163–177. DOI: 10.3354/meps08650. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Gould&Kimmerer_2010_Limnoithona.pdf</a >

Graham, R. J. and D. J. Orth. 1986. Effects of Temperature and Streamflow on Time and Duration of Spawning by Smallmouth Bass. Transactions of the American Fisheries Society 115:693–702. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Grahamn%20and%20Orth%20.1986.%20Temperature%20Streamflowon%20Spawning%20Smallmouth%20Bass.pdf</a >

Greater Battle Creek Watershed Working Group. 2006. Battle Creek: An Extraordinary Restoration Opportunity. Available: https://data.sacriver.org/assets/f1cb2bcf8cda9dd924d396b652b39c3c/application/pdf/BattleCreekSalmonAndSteelheadRestorationProjecBrochure.pdf</a >. Accessed: March 17, 2023.

Greenberg, J. A., E. L. Hestir, D. Riano, G. J. Scheer, and S. L. Ustin. 2012. Using LiDAR Data Analysis to Estimate Changes in Insolation Under Large-Scale Riparian Deforestation. JAWRA Journal of the American Water Resources Association 48:939–948. Available: https://doi.org/10.1111/j.1752-1688.2012.00664.x. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Greenberg%20et%20al_2012_Using%20LiDAR%20Data%20Analysis.pdf</a >

Greene, V. E., L. J. Sullivan, J. K. Thompson, W. J. Kimmerer. 2011. Grazing Impact of the Invasive Clam Corbula amurensis on the Microplankton Assemblage of the Northern San Francisco Estuary. Marine Ecology Progress Series 431:183–193. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Greene_et_al_2011_Grazing_Impact_Invasive_Clam_Microplankton.pdf</a >

Greenfield, B. K., S. J. Teh, J. R. M. Ross, J. Hunt, G. H. Zhang, J. A. Davis. G. Ichikawa, D. Crane, S. O. Hung, D. F. Deng, F. C. Teh, P. G. Green. 2008. Contaminant Concentrations and Histopathological Effects in Sacramento Splittail (Pogonichthys macrolepidotus). Environmental Contamination & Toxicology 55(2): 270–281. August. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/GreenfieldEtAl_2008_Contaminant.pdf</a >

Greenwood, M. 2018. Potential Effects on Zooplankton From California WaterFix Operations. Technical Memorandum to California Department of Water Resources. July 2. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2_rebuttal/dwr_1349.pdf</a >.

Gregory, R. S., and C. D. Levings. 1998. Turbidity Reduces Predation on Migrating Juvenile Pacific Salmon. Transactions of the American Fisheries Society 127(2):275–285. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Gregory&Levings_1998_turbidity.pdf</a >

Grimaldo, L. F., R. E. Miller, C. M. Peregrin, and Z. P. Hymanson. 2004. Spatial and Temporal Distribution of Native and Alien Ichthyoplankton in Three Habitat Types of the Sacramento–San Joaquin Delta. American Fisheries Society Symposium 39: 81–96. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/GrimaldoEtAl_2004_Ichthyoplankton.pdf</a >

Grimaldo, L. F., T. Sommer, N. Van Ark, G. Jones, E. Holland, P. B. Moyle, B. Herbold, and P. Smith. 2009. Factors Affecting Fish Entrainment into Massive Water Diversions in a Freshwater Tidal Estuary: Can Fish Losses be Managed? North American Journal of Fisheries Management 29:1253–1270. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/GrimaldoEtAl_2009_factors-affecting-fish-entrain.pdf</a >

Grimaldo, L., R. E. Miller, C. M. Peregrin, and Z. Hymanson. 2012. Fish Assemblages in Reference and Restored Tidal Freshwater Marshes of the San Francisco Estuary. San Francisco Estuary and Watershed Science 10(1). Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Grimaldo_et_al_2012_Fish%20Assemblages%20in%20Reference%20and%20Restored%20Tidal%20Freshwater%20Marshes%20of%20the%20San%20Francisco%20Estuary_SFEWS.pdf</a >

Grimaldo, L. F., W. E. Smith, and M. L. Nobriga. 2021. Re-Examining Factors That Affect Delta Smelt (Hypomesus transpacificus) Entrainment at the State Water Project and Central Valley Project in the Sacramento–San Joaquin Delta. San Francisco Estuary and Watershed Science 19(1). Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Grimaldo%20et%20al_2021_Re-Examining%20Factors_Delta%20Smelt%20Entrainment.pdf</a >

Gross, E. S., J. Korman, L. F. Grimaldo, M. L. MacWilliams, A. J. Bever, and P. E. Smith. 2021. Modeling Delta Smelt Distribution for Hypothesized Swimming Behaviors. San Francisco Estuary and Watershed Science 19(1). Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Gross%20et%20al_2021_Modeling%20Delta%20Smelt%20Distribution.pdf</a >

Grossman, G. D., T. Essington, B. Johnson, J. Miller, N. E. Monsen, and T. N. Pearsons. 2013. Effects of Fish Predation on Salmonids in the Sacramento River-San Joaquin Delta and Associated Ecosystems. September 25. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Grossman%20et%20al_2013_Fish%20Predation%20Final%20Report.pdf</a >

Hallock, R. J., R. F. Elwell, and D. H. Fry, Jr. 1970. Migrations of Adult King Salmon, Oncorhynchus tshawytscha, in the San Joaquin Delta. California Department of Fish and Game Bulletin 151:1–92. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/wq_control_plans/1995wqcp/exhibits/doi/doi-exh-46m.pdf</a >.

Hamilton, S. A., and D. D. Murphy. 2020. Use of affinity analysis to guide habitat restoration and enhancement for the imperiled delta smelt. Endangered Species Research 43:103-120. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Hamilton_Murphy_2020_Use%20of%20affinity%20analysis%20to%20guide%20habitat%20restoration%20and%20enhancement%20for%20the%20imperiled%20delta%20smelt_ESR.pdf</a >

Hance, D. J., R. W. Perry, J. R. Burau, A. Blake, P. Stumpner, X. Wang, and A. Pope. 2020. Combining Models of the Critical Streakline and the Cross-Sectional Distribution of Juvenile Salmon to Predict Fish Routing at River Junctions. San Francisco Estuary and Watershed Science 18(1). Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Hance_et_al_2020_Combining%20Models%20of%20the%20Critical%20Streakline%20and%20the%20Cross-Sectional%20Distribution%20of%20Juvenile%20Salmon%20to%20Predict%20Fish%20Routing%20at%20River%20Junctions.%20.pdf</a >

Hanson, C. H., and H. W. Li. 1978. A Research Program to Examine Fish Behavior in Response to Hydraulic Flow Fields – Development of Biological Design Criteria for Proposed Water Diversions. Completion report for Project C-7679, Grant No. 14-34-001-7254, Office of Water Research and Technology, United States Department of the Interior. February. Davis, CA: University of California. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Hanson_Li_1978_A%20Research%20Program%20to%20Examine%20Fish%20Behavior%20in%20Response%20to%20Hydraulic%20Flow%20Fields.pdf</a >

Hanson, C. H. 2001. Are Juvenile Chinook Salmon Entrained at Unscreened Diversions in Direct Proportion to the Volume of Water Diverted? Contributions to the Biology of Central Valley Salmonids. California Department of Fish and Game Fish Bulletin 179: 331–342. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Hanson_AreJuvChinookEntrainedAtUnscreened_2001.pdf</a >

Hanson, M. B., Baird, R. W., Ford, J. K. B., Hempelmann, J. A., Van Doornik, D. M., Candy, J. R., Emmons, C. K., Schorr, G. S., Gisborne, B., Ayres, K. L., Wasser, S. K., Balcomb, K. C., Balcomb-Bartok, K., Sneva, J. G., and Ford, M. J. 2010. Species and stock identification of prey consumed by endangered Southern Resident Killer Whales in their summer range. Endangered Species Research 11:69–82. doi: 10.3354/esr00263. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626166.pdf</a >.

Harrell, W. C., and T. R. Sommer. 2003. Patterns of Adult Fish Use on California’s Yolo Bypass Floodplain. California Riparian Systems: Processes and Floodplain Management, Ecology, and Restoration. Pages 88–93 in P. M. Faber, editor, California Riparian Systems: Processes and Floodplain Management, Ecology, and Restoration. 2001 Riparian Habitat and Floodplains Conference Proceedings. Riparian Habitat Joint Venture. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/swrcb/swrcb_harrell2003.pdf</a >.

Harvey, B. N. 2011. Length-At-Date Criteria to Classify Juvenile Chinook Salmon in the California Central Valley: Development and Implementation History. Interagency Ecological Program Newsletter 24(3). Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Harvey_2011_IEP%20Newsletter_Classify%20Juvenile%20Chinook%20Salmon.pdf</a >

Harvey, B. N., D. P. Jacobson, and M. A. Banks. 2014. Quantifying the Uncertainty of a Juvenile Chinook Salmon Race Identification Method for a Mixed-Race Stock. North American Journal of Fisheries Management 34(6):1177–1186. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Harvey_et_al_2014_Quantifying%20the%20Uncertainty%20of%20a%20Juvenile%20Chinook%20Salmon%20Race%20Identification%20Method%20for%20a%20Mixed-Race%20Stock_NAJFM.pdf</a >

Hassrick, J. L., A. J. Ammann, R. W. Perry, S. N. John, and M. E. Daniels. 2022. Factors Affecting Spatiotemporal Variation in Survival of Endangered Winter‐Run Chinook Salmon Out‐migrating from the Sacramento River. North American Journal of Fisheries Management 42(2):375–395. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Hassrick%20et%20al_2022_Factors%20Affecting%20Spatiotemporal%20Variation.pdf</a >

Hastings, M. C., and A. N. Popper. 2005. Effects of sound on fish. Report prepared for California Department of Transportation. Jones & Stokes, Sacramento, CA. Available: https://www.pge.com/includes/docs/pdfs/shared/edusafety/systemworks/dcpp/hastings_and_popper_2005_effects_of_sound_on_fish.pdf</a >.

Hellmair, M., M. Peterson, B. Mulvey, K. Young, J. Montgomery, and A. Fuller. 2018. Physical Characteristics Influencing Nearshore Habitat Use by Juvenile Chinook Salmon in the Sacramento River, California. North American Journal of Fisheries Management 38(4):959–970. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Hellmair%20et%20al_2018_Physical%20Characteristics.pdf</a >

Henderson, M. J., I. S. Iglesias, C. J. Michel, A. J. Ammann, and D. D. Huff. 2019. Estimating spatial-temporal differences in Chinook salmon outmigration survival with habitat and predation related covariates. Canadian Journal of Fisheries and Aquatic Sciences 76(9):1549–1561. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Henderson_et_al_2019_Estimating%20spatial-temporal%20differences%20in%20Chinook%20salmon%20outmigration%20survival%20with%20habitat%20and%20predation%20related%20covariates_CJFAS.pdf</a >

Hendrix, N., A.-M. K. Osterback, V. Sridharan, D. Jackson, S. John, M. Daniels, E. Danner, E. Jennings, A. Criss, C. M. Greene, H. Imaki, and S. T. Lindley. 2023. Model Description for the Sacramento River Winter-run Chinook Salmon Life Cycle Model: An Implementation for the Sites Reservoir Project. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Hendrix_etal_2023_ModelDescription.pdf</a >

Hennessy, A., and Z. Burris. 2017. Preliminary analysis of current relationships between zooplankton abundance and freshwater outflow in the upper San Francisco Estuary. Memorandum to S. Louie, Senior Environmental Scientist, California Department of Fish and Wildlife, Water Branch. February 21. Stockton, CA: California Department of Fish and Wildlife, Bay-Delta Region. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Hennessy_Burris_2017_Preliminary%20analysis%20of%20current%20relationships%20between%20zooplankton%20abundance.pdf</a >

Hennessy, A., and T. Enderlein. 2013. Zooplankton Monitoring 2011. IEP Newsletter 26(1):23–30. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Hennessy_Enderlein_2013_Zooplankton_Monitoring.pdf</a >

Herren, J. R., and S. S. Kawasaki. 2001. Inventory of Water Diversions in Four Geographic Areas in California’s Central Valley. Contributions to the Biology of Central Valley Salmonids. Edited by R. L. Brown. California Department of Fish and Game Fish Bulletin 179(2):343–355. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626293.pdf</a >.

Hestir, E. L., D. H. Schoellhamer, J. Greenberg, T. Morgan-King, and S. L. Ustin. 2016. The Effect of Submerged Aquatic Vegetation Expansion on a Declining Turbidity Trend in the Sacramento-San Joaquin River Delta. Estuaries and Coasts 39(4):1100-1112. Available: http://dx.doi.org/10.1007/s12237-015-0055-z</a >.

Heublein, J. C., J. T. Kelly, C. E. Crocker, A. P. Klimley, and S. T. Lindley. 2009. Migration of Green Sturgeon (Acipenser medirostris) in the Sacramento River. Environmental Biology of Fishes 84: 245–258. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Heublein_etal_2009_GSTmigrationSacRiver.pdf</a >

Heublein, J., R. Belmer, R. D. Chase, P. Doukakis, M. Gingras, D. Hampton, J. A. Israel, Z. J. Jackson, R. C. Johnson, O. P. Langness, S. Luis, E. Mora, M. L. Moser, L. Rohrbach, A. M. Seesholtz, T. Sommer, and J. S. Stuart. 2017. Life History and Current Monitoring Inventory of San Francisco Estuary Sturgeon. National Marine Fisheries Service, NOAA Technical Memorandum NOAA-TM-NMFS-SWFSC-589. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626323.pdf</a >.

Hilborn, R., S. P. Cox, F. M. D. Gulland, D. G. Hankin, N. T. Hobbs, D. E. Schindler, and A. W. Trites. 2012. The Effects of Salmon Fisheries on Southern Resident Killer Whales: Final Report of the Independent Science Panel. Prepared for National Marine Fisheries Service and Fisheries and Oceans Canadas. Available: https://www.raincoast.org/wp-content/uploads/2009/07/kw-effects_of_salmon_fisheries_on_srkw-final-rpt.pdf</a >.

Hinrichsen, R. A., D, J. Hasselman, C. C. Ebbesmeyer, B. A. Shields. 2013. The Role of Impoundments, Temperature, and Discharge on Colonization of the Columbia River Basin, USA. Transactions of the American Fisheries Society 142(4): 887–900. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Hinrichsenetal.2013-The%20role%20impoundments%20temperature%20dischargeon%20colonization%20Columbia%20River%20Basin%20by%20American%20shad.pdf</a >

Hobbs, J. A., L. S. Lewis, M. Willmes, C. Denney, and E. Bush. 2019. Complex Life Histories Discovered in a Critically Endangered Fish. Scientific Reports 9(1):1–12. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Hobbs_etal_2019_Complex%20life%20histories.pdf</a >

Houlton, B., and J. Lund. 2018. Sacramento Summary Report. California’s Fourth Climate Change Assessment. Publication number: SUM-CCCA4-2018-002. Available: https://www.energy.ca.gov/sites/default/files/2019-11/Reg_Report-SUM-CCCA4-2018-002_SacramentoValley_ADA.pdf</a >.

Huber, E. R., and S. M. Carlson. 2015. Temporal Trends in Hatchery Releases of Fall-Run Chinook Salmon in California’s Central Valley. San Francisco Estuary and Watershed Science 13(2). Available: https://nature.berkeley.edu/carlsonlab/wp-content/uploads/2016/01/Huber_Carlson_2015_SFEWS.pdf</a >.

Hutton, P. H., J. S. Rath, L. Chen, M. J. Ungs, and S. B. Roy. 2016. Nine Decades of Salinity Observations in the San Francisco Bay and Delta: Modeling and Trend Evaluations. Journal of Water Resources Planning and Management 142(3):04015069. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Hutton_et_al_2015_Nine%20Decades%20of%20Salinity%20Observations%20in%20the%20San%20Francisco%20Bay%20and%20Delta%20Modeling%20and%20Trend%20Evaluations_J_Wat_Res_Plan_Mgmt.pdf</a >

ICF International. 2015. Butte Regional Conservation Plan Public Draft Environmental Impact Statement/Environmental Impact Report. May. (ICF 00736.10.) Sacramento, CA. Prepared for Butte County Association of Governments, Chico, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/ICF_2015_Butte_Reg_Conservation_Plan.pdf</a >

ICF International. 2016. Biological Assessment for the California WaterFix. July. (ICF 00237.15.) Sacramento, CA. Prepared for U.S. Department of the Interior, Bureau of Reclamation, Sacramento, CA. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/exhibit104/docs/1_Cover_TitlePage_TOC_RevisedDraftBA.pdf</a >.

Independent Review Panel. 2011. Report of the 2011 Independent Review Panel (IRP) on the Implementation of Reasonable and Prudent Alternative (RPA) Actions Affecting the Operations Criteria And Plan (OCAP) for State/Federal Water Operations. Prepared by J. J. Anderson, J. A. Gore, R. T. Kneib, M.S. Lorang, and J. Van Sickle. Delta Stewardship Council/Delta Science Program. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/2019-04-22_IRP_OCAP_RPA_2011_Final_Report_v2.pdf</a >.

Interagency Ecological Program, B. Mahardja, J. Speegle, A. Nanninga, and D. Barnard. 2019. Interagency Ecological Program: Over Four Decades of Juvenile Fish Monitoring Data from the San Francisco Estuary, Collected by the Delta Juvenile Fish Monitoring Program, 1976-2018 version 3. Environmental Data Initiative. Available: https://doi.org/10.6073/pasta/87dda12bed2271ce3d91abdb7864c50c</a >. Accessed January 9, 2023.

Interagency Ecological Program Management, Analysis, and Synthesis Team. 2015. An updated conceptual model of Delta Smelt biology: our evolving understanding of an estuarine fish. Technical Report 90. January. Interagency Ecological Program for the San Francisco Bay/Delta Estuary, Sacramento, CA. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1089 IEP_MAST_Team_2015_Delta_Smelt_MAST_Synthesis_Report_January 2015.pdf</a >.

Israel, J. A., and A. P. Klimley. 2008. Life History Conceptual Model for North American Green Sturgeon (Acipenser medirostris). Delta Regional Ecosystem Restoration Implementation Plan (DRERIP). Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Israel_2008.pdf</a >

Jabusch, T., A. Melwani, K. Ridolfi, and M. Connor. 2008. Effects of Short-term Water Quality Impacts Due to Dredging and Disposal on Sensitive Fish Species in San Francisco Bay. Prepared for U.S. Army Corps of Engineers, San Francisco District. September. Oakland, CA: San Francisco Estuary Institute. Available: https://www.spn.usace.army.mil/Portals/68/docs/Dredging/LMTS/S and S/6 – Water Quality.pdf</a >.

Jackson, Z. J., J. J. Gruber, and J. P. Van Eenennaam. 2016. White Sturgeon Spawning in the San Joaquin River, California, and Effects of Water Management. Journal of Fish and Wildlife Management 7(1):171–180. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Jackson%20et%20al_2016_White%20Sturgeon%20Spawning%20in%20the%20San%20Joaquin%20River.pdf</a >

Jassby, A. D., W. J. Kimmerer, S. G. Monismith, C. Armor, J. E. Cloern, T. M. Powell, J. R. Schubel, and T. J. Vendlinski. 1995. Isohaline Position as a Habitat Indicator for Estuarine Populations. Ecological Applications 5:272–289. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/SWC/swc_3.pdf</a >.

Jassby, A. D., J. E. Cloern, and B. E. Cole. 2002. Annual Primary Production: Patterns and Mechanisms of Change in a Nutrient-rich Tidal Ecosystem. Limnology and Oceanography 47:698–712. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/srcsd/engle52bjassby.pdf</a >.

Jeffries, K. M., R. E. Connon, B. E. Davis, L. M. Komoroske, M. T. Britton, T. Sommer, A. E. Todgham, and N. A. Fangue. 2016. Effects of high temperatures on threatened estuarine fishes during periods of extreme drought. Journal of Experimental Biology 219(11):1705–1716. Available: https://journals.biologists.com/jeb/article/219/11/1705/15168/Effects-of-high-temperatures-on-threatened</a >.

Johnson, R. R., D. C. Weigand, and F. W. Fisher. 1992. Use of Growth Data to Determine the Spatial and Temporal Distribution of Four Runs of Juvenile Chinook Salmon in the Sacramento River, California. North Central Valley Fishery Resource Office, Red Bluff, CA Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Johnson_et_al_1992_Use%20of%20growth%20data%20to%20determine%20the%20spatial%20and%20temporal%20distribution%20of%20four%20runs%20of%20juvenile%20Chinook%20salmon_USFWS.pdf</a >

Johnson, M. L, I. Werner, S. J. Teh, and F. Loge. 2010. Evaluation of Chemical, Toxicological, and Histopathologic Data to Determine Their Role in the Pelagic Organism Decline. Available: Accessed 2015 October 24. Final report to the California State Water Resources Control Board and Central Valley Regional Water Quality Control Board. University of California, Davis. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626347.pdf</a >.

Johnston, M., J. Frantzich, M. B. Espe, P. Goertler, G. Singer, T. Sommer, and A. P. Klimley. 2020. Contrasting the migratory behavior and stranding risk of White Sturgeon and Chinook Salmon in a modified floodplain of California. Environmental Biology of Fishes 103:481–493. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Johnston_et_al_2020_Contrasting%20the%20migratory%20behavior%20and%20stranding%20risk%20of%20White%20Sturgeon%20and%20Chinook%20Salmon%20in%20a%20modified%20floodplain%20of%20California_EBF.pdf</a >

Jungbluth, M., C. Lee, C. Patel, T. Ignoffo, B. Bergamaschi, and W. Kimmerer. 2021. Production of the Copepod Pseudodiaptomus forbesi Is Not Enhanced by Ingestion of the Diatom Aulacoseira granulata During a Bloom. Estuaries and Coasts 44:1083–1099. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Jungbluth%20et%20al_2021_Copepod%20Pseudodiaptomus%20forbesi.pdf</a >

Katz, J. V., C. Jeffres, J. L. Conrad, T. R. Sommer, J. Martinez, S. Brumbaugh, N. Corline, and P. B. Moyle. 2017. Floodplain Farm Fields Provide Novel Rearing Habitat for Chinook Salmon. PLOS ONE. Available: http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0177409</a >. Accessed: June 7, 2021.

Kimmerer, W. J. 2002a. Physical, biological, and management responses to variable freshwater flow into the San Francisco Estuary. Estuaries 25:1275–1290. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/sldmwa/kimmerer2002b.pdf</a >.

Kimmerer, W. J. 2002b. Effects of freshwater flow on abundance of estuarine organisms: physical effects or trophic linkages. Marine Ecology Progress Series 243:39–55. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/swrcb/swrcb_kimmerer2002.pdf</a >.

Kimmerer, W. J. 2004. Open Water Processes of the San Francisco Estuary: from Physical Forcing to Biological Responses. San Francisco Estuary and Watershed Science 2(1). Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/dwr_575.pdf</a >.

Kimmerer, W. J. 2005. Long-Term Changes in Apparent Uptake of Silica in the San Francisco Estuary. Limnology and Oceanography 50:793–798. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/srcsd/kimmererestuary.pdf</a >.

Kimmerer, W. J. 2006. Response of Anchovies Dampens Effects of the Invasive Bivalve Corbula amurensis on the San Francisco Estuary Foodweb. Marine Ecology Progress Series 324:207–218. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/sfwc/spprt_docs/sfwc_exh3_kimmerer_resoponse_of_anchovies.pdf</a >.

Kimmerer, W. J., and M. Nobriga. 2008. Investigating Particle Transport and Fate in the Sacramento San Joaquin Delta Using a Particle Tracking Model. San Francisco Estuary and Watershed Science 6(1). Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/dd_jardins/part2_surrebuttal/ddj_336.pdf</a >.

Kimmerer, W. J. and J. K. Thompson. 2014. Phytoplankton Growth Balanced by Clam and Zooplankton Grazing and Net Transport into the Low-Salinity Zone of the San Francisco Estuary. Estuaries and Coasts, Pre-print published online: January 7. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Kimmer_Thompson_2014_Phyto_Growth_Balanced_ClamAndZoop_Grazing.pdf</a >

Kimmerer, W. J., E. Gartside, and J. J. Orsi. 1994. Predation by an Introduced Clam as the Likely Cause of Substantial Declines in Zooplankton of San Francisco Bay. Marine Ecology Progress Series 113:81–93. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/sfwc/spprt_docs/sfwc_exh3_kimmerer_predation_by_introduced_clam.pdf – :~:text=is%20the%20cause%20of%20the%20reduced%20survlval%20of,composltlon%20of%20inshore%20zooplankton%20KEY%20WORDS-%20Potamocorbula%20amurensls.

Kimmerer, W. J., J. R. Burau, W. A. Bennett. 1998. Tidally Oriented Vertical Migration and Position Maintenance of Zooplankton in a Temperate Estuary. Limnology and Oceanography 43(7):1697–1709. Available: https://aslopubs.onlinelibrary.wiley.com/doi/pdf/10.4319/lo.1998.43.7.1697</a >.

Kimmerer, W. J., J. H. Cowan, Jr., L. W. Miller, and K. A. Rose. 2000. Analysis of an Estuarine Striped Bass (Morone saxatilis) Population: Influence of Density-dependent Mortality Between Metamorphosis and Recruitment. Canadian Journal of Fisheries and Aquatic Sciences 57:478–486. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/sldmwa/kimmereretal2000.pdf</a >.

Kimmerer, W. J., N. Ferm, M. H. Nicolini, C. Penalva. 2005. Chronic Food Limitation of Egg Production in Populations of Copepods of the Genus Acartia in the San Francisco Estuary. Estuaries 28(4): 541–550. August. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Kimmerer%202005b.pdf</a >

Kimmerer, W., L. Brown, S. Culberson, P. Moyle, M. Nobriga, and J. Thompson. 2008. Aquatic Ecosystems. Pages 73–101 in M. Healey, editor, The State of Bay-Delta Science. CALFED Science Program. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/swrcb/swrcb_kimmerer2008_2.pdf</a >.

Kimmerer, W. J., E. S. Gross, and M. L. MacWilliams. 2009. Is the Response of Estuarine Nekton to Freshwater Flow in the San Francisco Estuary Explained by Variation in Habitat Volume? Estuaries and Coasts 32:375–389. Doi 10.1007/s12237-008-9124-x. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/kimmerer_etal_ec_2009.pdf</a >.

Kimmerer, W. J., T. R. Ignoffo, K. R. Kayfetz, and A. M. Slaughter. 2018. Effects of Freshwater Flow and Phytoplankton Biomass on Growth, Reproduction, and Spatial Subsidies of the Estuarine Copepod Pseudodiaptomus forbesi. Hydrobiologia 807:113–130. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/KimmererEtAl_2018_EffectsFreshwater.pdf</a >

Kimmerer, W. J., E. S. Gross, A. M. Slaughter, and J. R. Durand. 2019. Spatial Subsidies and Mortality of an Estuarine Copepod Revealed Using a Box Model. Estuaries and Coasts 42(1):218–236. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/KimmererEtAl_2019_spatial-sub-mort-estuarine-box-model.pdf</a >

Kneib, R. T. 2019. Independent Review of the Coordinated Long-Term Operation of the Central Valley Project and State Water Project. Prepared for National Marine Fisheries Service and U.S. Fish and Wildlife Service. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Kneib_2019_Independent%20Review_LTO%20CVP%20SWP.pdf</a >

Korman, J., E. S. Gross, and L. F. Grimaldo. 2021. Statistical Evaluation of Behavior and Population Dynamics Models Predicting Movement and Proportional Entrainment Loss of Adult Delta Smelt in the Sacramento–San Joaquin River Delta. San Francisco Estuary and Watershed Science 19(1). Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Korman%20et%20al_2021_Statistical%20Evaluation.pdf</a >

Kuivila, K. M., and C. G. Foe. 1995. Concentrations, Transport and Biological Effects of Dormant Spray Pesticides in the San Francisco Estuary, California. Environmental Toxicology and Chemistry 14: 1141–1150. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Kuivila_1995_Concentrations.pdf</a >

Lee, D. P., and J. Chilton. 2007. Hatchery and Genetic Management Plan for Nimbus Fish Hatchery Winter-Run Steelhead Program. Draft Report. Prepared by CDFG under Contract 03CS200006 Modification 0004 with Bureau of Reclamation, Folsom, CA, and Nimbus Fish Hatchery, Rancho Cordova, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Lee&Chilton2007_HatcheryGenetic.pdf</a >

Lee, G. F., and A. Jones-Lee. 2003. Summary of Findings on the Causes and Factors Influencing Low DO in the San Joaquin River Deep Water Ship Channel near Stockton, CA. Report of G. Fred Lee & Associates, El Macero, CA. March. Available: http://www.gfredlee.com/psjriv2.htm</a >.

Lee, J. W., De Riu, N., Lee, S., Bai, S. C., Moniello, G., and S.S. Hung. 2011. Effects of dietary methylmercury on growth performance and tissue burden in juvenile green (Acipenser medirostris) and white sturgeon (A. transmontanus). Aquatic Toxicology, 105(3-4):227–234. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Lee%20et%20al_2011_Effects%20of%20Dietary%20Methylmercury.pdf</a >

Lee, P., and J. Manning. 2020. Mercury Imports and Exports of Four Tidal Wetlands in the Sacramento-San Joaquin Delta, Yolo Bypass, and Suisun Marsh for Delta Mercury Control Program Compliance. California Department of Water Resources. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Lee%20and%20Manning_2020_Mercury%20Imports%20and%20Exports.pdf</a >

Lehman, P. W., G. Boyer, C. Hall, and K. Gehrts. 2005. Distribution and Toxicity of a New Colonial Microcystis aeruginosa Bloom in the San Francisco Bay Estuary, California. Hydrobiologia (2005) 541:87–99. DOI 10.1007/s10750-004-4670-0. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/DWR-721.pdf</a >.

Lehman, P. W., T. Sommer, and L. Rivard. 2008a. The Influence of Floodplain Habitat on the Quantity of Riverine Phytoplankton Carbon Produced During the Flood Season in San Francisco Estuary. Aquatic Ecology 42:363–378. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Lehman_et_al_2008_Influence%20of%20Floodplain%20Habitat%20on%20the%20Quantity%20of%20Riverine%20Phytoplankton.pdf</a >

Lehman, P. W., G. Boyer, M. Satchwell, and S. Waller. 2008b. The Influence of Environmental Conditions on the Seasonal Variation of Microcystis Cell Density and Microcystins Concentration in San Francisco Estuary. Hydrobiologia 600(1): 187–204. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Lehman_et_al_2008.pdf</a >

Lehman, P. W., S. J. Teh, G. L. Boyer, M. L. Nobriga, E. Bass, C. Hogle. 2010. Initial Impacts of Microcystis aeruginosa Blooms on the Aquatic Food Web in the San Francisco Estuary. Hydrobiologia (2010) 637:229–248. DOI 10.1007/s10750-009-9999-y. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Lehman_et_al_2010_Microcystis_Hydrobiologia.pdf</a >

Lehman, P. W., T. Kurobe, K. Huynh, S. Lesmeister, and S. J. Teh. 2021. Covariance of Phytoplankton, Bacteria, and Zooplankton Communities Within Microcystis Blooms in San Francisco Estuary. Frontiers in Microbiology 1184. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Lehman%20et%20al_2021_Covariance%20of%20Phytoplankton.pdf</a >

Lindley, S. T., R. Schick, E. Mora, P. B. Adams, J. J. Anderson, S. Greene, C. Hanson, B. P. May, D. R. McEwan, R. B. MacFarlane, C. Swanson, and J. G. Williams. 2007. Framework for Assessing Viability of Threatened and Endangered Chinook Salmon and steelhead in the Sacramento-San Joaquin Basin. San Francisco Estuary and Watershed Science 5: 26. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/nmfs/spprt_docs/nmfs_exh4_lindley_etal_2007.pdf</a >.

Linville, R.G., Luoma, S.N., Cutter, L. and Cutter, G.A., 2002. Increased selenium threat as a result of invasion of the exotic bivalve Potamocorbula amurensis into the San Francisco Bay-Delta. Aquatic Toxicology 57(1–2):51–64. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626750.pdf – :~:text=Following%20the%20aggressive%20invasion%20of%20the%20bivalve%2C%20Potamocorbula,earlier%20studies%2C%20and%201990%20concentrations%20in%20benthic%20predators</a >.

Loboschefsky, E., G. Benigno, T. Sommer, K. Rose, T. Ginn, A. Massoudieh, and F. Loge. 2012. Individual-level and Population-level Historical Prey Demand of San Francisco Estuary Striped Bass Using a Bioenergetics Model. San Francisco Estuary and Watershed Science 10(1). Available: https://escholarship.org/uc/item/1c788451</a >.

Lukas, J. A. and D. J. Orth. 1995. Factors Affecting Nesting Success of Smallmouth Bass in a Regulated Virginia Stream. Transactions of the American Fisheries Society 124:726–735. Available: https://www.researchgate.net/publication/254328688_Factors_Affecting_Nesting_Success_of_Smallmouth_Bass_in_a_Regulated_Virginia_Stream</a >.

Mac Nally, R., Thomson, J. R., Kimmerer, W. J., Feyrer, F., Newman, K. B., Sih, A. et al. 2010. Analysis of Pelagic Species Decline in the Upper San Francisco Estuary Using Multivariate Autoregressive Modeling (MAR). Ecological Applications 20(5):1417–1430. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/sldmwa/macnallyetal2010.pdf</a >.

Mahardja, B., J. L. Conrad, L. Lusher. And B. Schreier. 2016. Abundance Trends, Distribution, and Habitat Associations of the Invasive Mississippi Silverside (Menidia audens) in the Sacramento–San Joaquin Delta, California, USA. San Francisco Estuary and Watershed Science 14(1). Available: https://www.researchgate.net/publication/298901391_Abundance_Trends_Distribution_and_Habitat_Associations_of_the_Invasive_Mississippi_Silverside_Menidia_audens_in_the_Sacramento-San_Joaquin_Delta_California_USA</a >.

Mahardja, B., M. J. Farruggia, B. Schreier, and T. Sommer. 2017. Evidence of a Shift in the Littoral Fish Community of the Sacramento-San Joaquin Delta. PLoS ONE 12(1):e0170683. Available: https://www.researchgate.net/publication/312876197_Evidence_of_a_Shift_in_the_Littoral_Fish_Community_of_the_Sacramento-San_Joaquin_Delta</a >.

Mahardja, B., J. A. Hobbs, N. Ikemiyagi, A. Benjamin, and A. J. Finger. 2019. Role of Freshwater Floodplain-Tidal Slough Complex in the Persistence of the Endangered Delta Smelt. PLOS ONE 14(1):e208084. Available: https://doi.org/10.1371/journal.pone.0208084</a >.

Manly, B. F. J., D. Fullerton, A. N. Hendrix, and K. P. Burnham. 2015. Comments on Feyrer et al. Modeling the Effects of Future Outflow on the Abiotic Habitat of an Imperiled Estuarine Fish. Estuaries and Coasts 38(5):1815–1820. Available: https://www.researchgate.net/publication/270516736_Comments_on_Feyrer_et_al_Modeling_the_Effects_of_Future_Outflow_on_the_Abiotic_Habitat_of_an_Imperiled_Estuarine_Fish</a >.

Marschall, E. A., D. C. Glover, M. E. Mather, D. L. Parrish. 2020. Modeling larval American shad recruitment in a large river. Special Section: 4th Mississippi–Yangtze River Basins Symposium. North American Journal of Fisheries Management. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Marschall%20et%20al.%202020.%20American%20shad%20recruitment%20model.%20NAJFM..pdf</a >

Marston, D., C. Mesick, A. Hubbard, D. Stanton, S. Fortmann-Roe, S. Tsao, and T. Heyne. 2012. Delta Flow Factors Influencing Stray Rate of Escaping Adult San Joaquin River fall-run Chinook Salmon (Oncorhynchus tshawytscha). San Francisco Estuary and Watershed Science 10(4). Available: https://escholarship.org/content/qt6f88q6pf/qt6f88q6pf_noSplash_358d88d7303534df0bf00c41458125d2.pdf?t=q5a12f</a >.

Martin, B. T., A. Pike, S. N. John, N. Hamda, J. Roberts, S. T. Lindley, and E. M. Danner. 2017. Phenomenological vs. biophysical models of thermal stress in aquatic eggs. Ecology Letters 20:50–59. doi: 10.1111/ele.12705. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/Martin_et_al-2017-Ecology_Letters.pdf</a >.

Matern, S. A., P. B. Moyle, and L. C. Pierce. 2002. Native and Alien Fishes in a California Estuarine Marsh: Twenty-one Years of Changing Assemblages. Transactions of the American Fisheries Society 131(5): 797–816, DOI: 10.1577/1548-8659(2002)131<0797:NAAFIA>2.0.CO;2. Available: https://www.researchgate.net/publication/237621948_Native_and_Alien_Fishes_in_a_California_Estuarine_Marsh_Twenty-One_Years_of_Changing_Assemblages</a >.

McCauley, R., J. Fewtrell, and A. Popper. 2003. High Intensity Anthropogenic Sound Damages Fish Ears. The Journal of the Acoustical Society of America 113:638–642. 10.1121/1.1527962. Available: https://www.researchgate.net/publication/10925877_High_intensity_anthropogenic_sound_damages_fish_ears</a >.

McMillen, LLC. 2013. Glenn-Colusa Irrigation District (GCID) Gradient Facility, Sacramento River, CA. Water Data Technical Memorandum. June 21. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/McMillen_2013_Glenn-Colusa%20Irrigation%20District%20(GCID)%20Gradient%20Facility.pdf</a >

Mefford, B., and Z. Sutphin. 2008. Intake Diversion Dam Fish Screens. Evaluation of Fish Screens for Protecting Early Life Stages of Pallid Sturgeon. Hydraulic Laboratory Report HL-2007-010. Draft. September. Denver, CO: Bureau of Reclamation, Technical Service Center, Water Resources Research Laboratory. Available: https://usbr.gov/gp/mtao/loweryellowstone/EA/Final EA/Support/Reclamation 2008 Intake Diversion Dams Fish Screens.pdf</a >.

Merced Irrigation District. 2013. Technical Memorandum 3-5. Instream Flow (PHABSIM) Downstream of Crocker-Huffman Dam. Merced Hydroelectric Project, FERC Project No. 2179.

Merz, J., B. Rook, C. Watry, and S. Zeug. 2012. Evaluation of the 2008-2010 Sailor Bar Gravel Placements on the Lower American River, California. 2010-2011 Data Report. Prepared for City of Sacramento Water Forum, and Bureau of Reclamation and U.S. Fish and Wildlife Service, CVPIA Gravel Program. Contract 2010-1049. Available: https://www.researchgate.net/publication/267365136_Evaluation_of_the_2008-2010_Sailor_Bar_Gravel_Placements_on_the_Lower_American_River_California

Merz, J., P. Bergman, J. Melgo, and S. Hamilton. 2013. Longfin Smelt: Spatial Dynamics and Ontogeny in the San Francisco Estuary, California. California Fish and Game 99:122–148. Available: https://www.researchgate.net/publication/259641846_Longfin_smelt_spatial_dynamics_and_ontogeny_in_the_San_Francisco_Estuary_California</a >.

Michel, C. J. 2010. River and Estuarine Survival and Migration of Yearling Sacramento River Chinook Salmon (Oncorhynchus tshawytscha) Smolts and the Influence of Environment. Master’s Thesis. University of California, Santa Cruz. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/michel_2010.pdf</a >.

Michel, C. J. 2018. Decoupling Outmigration from Marine Survival Indicates Outsized Influence of Streamflow on Cohort Success for California’s Chinook Salmon Populations. Canadian Journal of Fisheries and Aquatic Sciences. Available: https://doi.org/10.1139/cjfas-2018-0140</a >.

Michel, C. J., A. J. Ammann, S. T. Lindley, P. T. Sandstrom, E. D. Chapman, M. J. Thomas, G. P. Singer, A. P. Klimley, and R. B. MacFarlane. 2015. Chinook Salmon Out-Migration Survival in Wet and Dry Years in California’s Sacramento River. Canadian Journal of Fisheries and Aquatic Sciences 72: 1749–1759. Available: https://www.researchgate.net/publication/282620085_Chinook_salmon_outmigration_survival_in_wet_and_dry_years_in_California’s_Sacramento_River</a >.

Michel, C., J. Notch, F. Cordoleani, A. Ammann, and E. Danner. 2021. Nonlinear Survival of Imperiled Fish Informs Managed Flows in a Highly Modified River. Ecosphere. DOI: 10.1002/ecs2.3498 Available: https://esajournals.onlinelibrary.wiley.com/doi/epdf/10.1002/ecs2.3498</a >.

Mitchell, C. P. J, T. E. Jordan, A. Heyes, and C. C. Gilmour. 2012. Tidal Exchange of Total Mercury and Methylmercury Between a Salt Marsh and a Chesapeake Bay Sub-Estuary. Biogeochemistry 111 (1-3):583–600. Available: https://doi.org/10.1007/s10533-011-9691-y</a >.

Mora, E. A., R. D. Battleson, S. T. Lindley, M. J. Thomas, R. Bellmer, L. J. Zarri, and A. P. Klimley. 2018. Estimating the Annual Spawning Run Size and Population Size of the Southern Distinct Population Segment of Green Sturgeon. Transactions of the American Fisheries Society 147:195–203. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Mora_etal_2018_Estimating_the_annual_spawning_run-size_and_popula.pdf</a >

Moser, M. L., A. D. Jackson, M. C. Lucas, and R. P. Mueller. 2015. Behavior and potential threats to survival of migrating lamprey ammocoetes and macrophthalmia. Reviews in Fish Biology and Fisheries 25(1):103–116. Available: https://www.salmonrecovery.gov/doc/default-source/default-document-library/behavior-and-potential-threats-to-survival-of-migrating-ammocoetes-and-macrophthalmiadb2d23bab16b6cf0b057ff00002e0fb7.pdf?sfvrsn=0</a >.

Mount, J., W. Bennett, J. Durand, W. Fleenor, E. Hanak, J. Lund, and P. B. Moyle. 2012. Aquatic Ecosystem Stressors in the Sacramento–San Joaquin Delta. Public Policy Institute of California, San Francisco. Available: https://www.ppic.org/wp-content/uploads/content/pubs/report/R_612JMR.pdf</a >.

Moyle, P. B. 2002. Inland Fishes of California. Second edition. University of California Press, Berkeley.

Moyle, P. B., R. D. Baxter, T. Sommer, T. C. Foin, and S. A. Matern. 2004. Biology and Population Dynamics of Sacramento Splittail (Pogonichthys macrolepidotus) in the San Francisco Estuary: a Review. San Francisco Estuary and Watershed Science 2:3. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1119 Moyle_et_al_2004_splittail.pdf</a >.

Moyle, P. B., and W. A. Bennett. 2008. The Future of the Delta Ecosystem and Its Fish. Technical Appendix D, Comparing Futures for the Sacramento–San Joaquin Delta. Public Policy Institute of California, San Francisco. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/sldmwa/moyleandbennett2008.pdf</a >.

Moyle, P., W. Bennett, J. Durand, W. Fleenor, B. Gray, E. Hanak, J. Lund, and J. Mount. 2012. Where the Wild Things Aren’t: Making the Delta a Better Place for Native Species. Public Policy Institute of California, San Francisco, CA. Available: http://www.ppic.org/content/pubs/report/R_612PMR.pdf</a >.

Moyle, P. B., R. M. Quiñones, J. V. Katz and J. Weaver. 2015. Fish Species of Special Concern in California. Sacramento: California Department of Fish and Wildlife. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=104282&inline</a >.

Mueller-Solger, A. B., A. D. Jassby, and D. C. Muller-Navarra. 2002. Nutritional Quality of Food Resources for Zooplankton (Daphnia) in a Tidal Freshwater System (Sacramento–San Joaquin River Delta). Limnol. Oceanogr. 47(5):1468–1476. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/CDWA et al/SDWA_231.pdf</a >.

Murphy, D.D., and P.S. Weiland. 2019. The Low-Salinity Zone in the San Francisco Estuary as a Proxy for Delta Smelt Habitat: A Case Study in the Misuse of Surrogates in Conservation Planning. Ecological Indicators 105:29–35. Available: https://doi.org/10.1016/j.ecolind.2019.05.053</a >.

Mussen, T. D., D. Cocherell, J. B. Poletto, J. S. Reardon, Z. Hockett, A. Ercan, H. Bandeh, M. L. Kavvas, J. J. Cech, and N. A. Fangue. 2014. Unscreened Water-Diversion Pipes Pose an Entrainment Risk to the Threatened Green Sturgeon, Acipenser medirostris. PLoS ONE 9: e86321. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626224.pdf</a >.

Myrick, C. A., and J. J. Cech. 2000. Swimming Performances of Four California Stream Fishes: Temperature Effects. Environmental Biology of Fishes 58(3):289–295. Available: https://www.fs.usda.gov/biology/nsaec/fishxing/fplibrary/Myrick and Cech-2000.pdf</a >.

National Marine Fisheries Service. 2008. Biological Opinion on 24,000 Linear Feet of Sacramento River Bank Protection Project, Phase II. 2007/07158. July 2, 2008. Long Beach, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/NMFS_2008_Bank_Protect_Program_Consult_PhaseII.pdf</a >

National Marine Fisheries Service. 2009. Biological Opinion and Conference Opinion on the Long-Term Operations of the Central Valley Project and State Water Project. National Marine Fisheries Service Southwest Region. June 4. Available: https://www.fisheries.noaa.gov/resource/document/biological-opinion-and-conference-opinion-long-term-operations-central-valley</a >. Available:

National Marine Fisheries Service. 2014. Recovery Plan for the Evolutionarily Significant Units of Sacramento River Winter-Run Chinook Salmon and Central Valley Spring-Run Chinook Salmon and the Distinct Population Segments of California Central Valley Steelhead. July. National Marine Fisheries Service West Coast Region. Available: https://www.fisheries.noaa.gov/resource/document/recovery-plan-evolutionarily-significant-units-sacramento-river-winter-run</a >.

National Marine Fisheries Service. 2016. Central Valley Recovery Domain 5-Year Review: Summary and Evaluation of California Central Valley Steelhead Distinct Population Segment. National Marine Fisheries Service, West Coast Region. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626245.pdf</a >.

National Marine Fisheries Service. 2017. Endangered Species Act Section 7(a)(2) Biological Opinion, Magnuson-Stevens Fishery Conservation and Management Act Essential Fish Habitat Response, and Fish and Wildlife Coordination Act Recommendations for the California WaterFix Project in Central Valley, California. NMFS Consultation Number: WCR-2016-5506. June 16. Portland, OR: United States Department of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service, West Coast Region. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/NMFS_2017_California_WaterFix_BiOp.pdf</a >

National Marine Fisheries Service. 2018a. NOAA Fisheries West Coast Region Anadromous Salmonid Passage Design Guidelines. Review Draft. August 16. National Marine Fisheries Service, West Coast Region, Portland, Oregon. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/National%20Marine%20Fisheries%20Service%202018a.pdf</a >

National Marine Fisheries Service. 2018b. Recovery Plan for the Southern Distinct Population Segment of North American Green Sturgeon (Acipenser medirostris). California Central Valley Area Office, National Marine Fisheries Service, Sacramento, CA. Available: https://www.fisheries.noaa.gov/resource/document/final-recovery-plan-southern-distinct-population-segment-north-american-green

National Marine Fisheries Service. 2019a. Biological Opinion on Long-term Operation of the Central Valley Project and the State Water Project. Consultation Tracking Number: WCRO-2016-00069. West Coast Region, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, U.S. Department of Commerce. October 21. Available: https://repository.library.noaa.gov/view/noaa/22046</a >.

National Marine Fisheries Service. 2019b. Endangered Species Act Section 7(a)(2) Biological Opinion, and Magnuson-Stevens Fishery Conservation and Management Act Essential Fish Habitat Response for the Yolo Bypass Salmonid Habitat Restoration and Fish Passage Project. May 10. West Coast Region, National Marine Fisheries Service, Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/NMFS_2019b_BioOpinion_HabitatResponse.pdf</a >

National Research Council. 2012. Sustainable Water and Environmental Management in the California Bay-Delta. Prepared by the Committee on Sustainable Water and Environmental Management in the California Bay Delta. The National Academies Press, Washington, D.C. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/dfg/cdfgnationalresearchcouncil2012a.pdf</a >.

Nixon, S. W. 1988. Physical Energy Inputs and the Comparative Ecology of Lake and Marine Ecosystems. Limnology and Oceanography, Part II 33: 1005–1025. Available: https://aslopubs.onlinelibrary.wiley.com/doi/epdf/10.4319/lo.1988.33.4part2.1005</a >.

Nobriga, M. L. 2009. Bioenergetic Modeling Evidence for a Context-dependent Role of Food Limitation in California’s Sacramento–San Joaquin Delta. California Fish and Game 95(3): 111–121. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/nobriga_2009.pdf</a >.

Nobriga, M. L., and F. Feyrer. 2007. Shallow-Water Piscivore-Prey Dynamics in California’s Sacramento–San Joaquin Delta. San Francisco Estuary and Watershed Science 5(2): Article 4. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/sfwc/spprt_docs/sfwc_exh3_nobriga_shallow_water_piscivore.pdf</a >.

Nobriga, M., and B. Herbold. 2009. The Little Fish in California’s Water Supply: A Literature Review and Life-History Conceptual Model for Delta Smelt (Hypomesus transpacificus) for the Delta Regional Ecosystem Restoration and Implementation Plan (DRERIP). Delta Regional Ecosystem Restoration Implementation Plan (DRERIP). Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Nobriga%20and%20Herbold_2009_Delta%20Smelt.pdf</a >

Nobriga, M. L., and J. A. Rosenfield. 2016. Population Dynamics of an Estuarine Forage Fish: Disaggregating Forces Driving Long-Term Decline of Longfin Smelt in California’s San Francisco Estuary. Transactions of the American Fisheries Society 145(1):44–58. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/NRDC_TBI_DOW/NRDC-36.pdf</a >.

Nobriga, M. L., Z. Matica, and Z. P. Hymanson. 2004. Evaluating Entrainment Vulnerability to Agricultural Irrigation Diversions: A Comparison among Open-Water Fishes. In F. Feyrer, L. R. Brown, R. L. Brown, and J. J. Orsi, editors, Early Life History of Fishes in the San Francisco Estuary and Watershed. American Fisheries Society Symposium 39: 281–295. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/wq_control_plans/1995wqcp/exhibits/doi/doi-exh-48l.pdf</a >.

Nobriga, M. L., F. Feyrer, R. D. Baxter, and M. Chotkowski. 2005. Fish Community Ecology in an Altered River Delta: Spatial Patterns in Species Composition, Life History Strategies and Biomass. Estuaries 28(5): 776–785. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/NobrigaEtAl_2005_fish-comm-ecology-altered.pdf</a >

Nobriga, M. L., F. Feyrer, and R. D. Baxter. 2006. Aspects of Sacramento Pikeminnow Biology in Nearshore Habitats of the Sacramento-San Joaquin Delta, California. Western North American Naturalist 66(1):106–114. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/swrcb/swrcb_nobriga2006.pdf</a >.

Nobriga, M. L., T. R. Sommer, F. Feyrer, and K. Fleming. 2008. Long-term Trends in Summertime Habitat Suitability for Delta Smelt, Hypomesus transpacificus. San Francisco Estuary and Watershed Science 6: Article 1. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/nobriga_etal_2008.pdf</a >.

Northern California Water Association. 2018. Food Production Program Continues to Improve Delta Smelt Conditions. October 8. Available: https://mavensnotebook.com/wp-content/uploads/2018/10/FoodWeb_PressRelease_FactSheet.pdf</a >. Accessed: May 23, 2019.

Orlando, J. L., M. De Parsia, C. Sanders, M. Hladik, and J. Frantzich. 2020. Pesticide concentrations associated with augmented flow pulses in the Yolo Bypass and Cache Slough Complex, California. Open-File Report 2020-1076. Reston, VA: U.S. Geological Survey. Available: https://pubs.usgs.gov/of/2020/1076/ofr20201076.pdf</a >.

Orsi, J. and W. L. Mecum. 1986. Zooplankton Distribution and Abundance in the Sacramento–San Joaquin Delta in Relation to Certain Environmental Factors. Estuaries 9(4B):326–339. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/dfg/spprt_docs/1987/cdfg_exh35.pdf</a >.

Pacific Fishery Management Council. 2019. Salmon Rebuilding Plan for Sacramento River Fall Chinook. Pacific Fishery Management Council, Portland, OR. Available: https://www.pcouncil.org/documents/2019/07/sacramento-river-fall-chinook-salmon-rebuilding-plan-regulatory-identifier-number-0648-bi04-july-2019.pdf/

Palmer-Zwahlen, M., and B. Kormos. 2013. Recovery of Coded-Wire Tags from Chinook salmon in California’s Central Valley Escapement and Ocean Harvest in 2011. Fisheries Branch Administrative Report 2013-02. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Palmer-Zwahlen&Kormos_2013_CFM_CWT_Recovery_Report_2011.pdf</a >

Payne, T. R., and M. Allen. 2004. Evaluation of Project Effects on Instream Flows and Fish Habitat. Phase 2 Interim Report. SP F-16. Sacramento, CA. Prepared for T. J. Mills, T. Sommer, and B. Cavallo, Oroville Facilities Relicensing Environmental Work Group, DWR. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Payne&Allen_2004_SP-F16%20Phase%202%20Report.pdf</a >

Payne, T. R., and M. Allen. 2005. Addendum to Phase II Report Evaluation of Project Efforts on Instream Flows and Fish Habitat. SP-F16 Sacramento, CA. Prepared for Oroville Facilities Relicensing Environmental Work Group, DWR. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Payne_2005_Addendum%20to%20Phase%202%20Report_SP-F16.pdf</a >

Perry, R. W. 2010. Survival and migration dynamics of juvenile Chinook Salmon (Oncorhynchus tshawytscha) in the Sacramento–San Joaquin River Delta. Doctoral dissertation. University of Washington, Seattle. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/perry_et_al_2010.pdf</a >.

Perry, R. W., P. L. Brandes, J. R. Burau, P. T. Sandstrom, and J. R. Skalski. 2015. Effect of Tides, River Flow, and Gate Operations on Entrainment of Juvenile Salmon into the Interior Sacramento–San Joaquin River Delta. Transactions of the American Fisheries Society 144:445–455. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626727.pdf</a >.

Perry, R. W., A. C. Pope, J. G. Romine, P. L. Brandes, J. R. Burau, A. R. Blake, A. J. Ammann, C. J. Michel. 2018. Flow-Mediated Effects on Travel Time, Routing, and Survival of Juvenile Chinook Salmon in a Spatially Complex, Tidally Forced River Delta. Canadian Journal of Fisheries and Aquatic Sciences 75(11):1886–1901. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Perry_et_al_2018_Flow-mediated_effects_travel_time.pdf</a >

Perry, R. W., A. C. Hansen, S. D. Evans, and T. J. Kock. 2019. Using the STARS Model to Evaluate the Effects of Two Proposed Projects for the Long-Term Operation of the State Water Project Incidental Take Permit Application and CEQA Compliance. Open-File Report 2019-1127. Version 2.0. February. U. S. Geological Survey, Reston, VA. Available: https://pubs.usgs.gov/of/2019/1127/ofr20191127.pdf</a >.

Phillis, C. C., A. M. Sturrock, R. C. Johnson, and P. K. Weber. 2018. Endangered Winter-Run Chinook Salmon Rely on Diverse Rearing Habitats in a Highly Altered Landscape. Biological Conservation 217:358–362. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Phillis_etal_2018_Endangered%20Winter-Run%20Chinook%20Salmon%20Rely%20on%20Diverse%20Rearing%20Habitats%20in%20a%20Highly%20Altered%20Landscape.pdf</a >

Pickard, A., A. Baracco, and R. Kano. 1982. Occurrence, Abundance, and Size of Fish at the Roaring River Intake, Suisun Marsh, California During the 1980-81 and the 1981-82 Diversion Seasons. IEP Technical Report 3. Interagency Ecological Program for the San Francisco Bay/Delta Estuary, Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Pickard%20et%20al_1982_Technical%20Report%203.pdf</a >

Plumb, J. M., N. S. Adams, R. W. Perry, C. M. Holbrook, J. G. Romine, A. R. Blake, and J. R. Burau. 2016. Diel Activity Patterns of Juvenile Late Fall-run Chinook Salmon with Implications for Operation of a Gated Water Diversion in the Sacramento–San Joaquin River Delta. River Research and Applications 32(4):711–720. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626468.pdf</a >.

Polansky, L., K. B. Newman, and L. Mitchell. 2021. Improving Inference for Nonlinear State-Space Models of Animal Population Dynamics Given Biased Sequential Life Stage Data. Biometrics 77(1):352–361. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Polansky%20et%20al_2021_Improving_Inference.pdf</a >

Popper, A., and M. Hastings. 2009. The effects of anthropogenic sources of sound on fishes. Journal of Fish Biology 75(3):455–489. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Popper_and_Hastings_2009_Effects_of_anthropogenic_sources_of_sound_on_fishes.pdf</a >

Poytress, W. R., J. J. Gruber, and J. P. Van Eenennaam. 2011. 2011 Upper Sacramento River Green Sturgeon Spawning Habitat and Larval Migration Surveys. Annual Report of U.S. Fish and Wildlife Service to Bureau of Reclamation, Red Bluff, CA. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626385.pdf</a >.

Poytress, W. R., J. J. Gruber, F. D. Carrillo, and S. D. Voss. 2014. Compendium Report of Red Bluff Diversion Dam Rotary Screw Trap Juvenile Anadromous Fish Production Indices Aquatic Biological Resources for Years 2002–2012. Prepared for California Department of Fish and Wildlife Ecosystem Restoration Program and the Bureau of Reclamation. July. U.S. Fish and Wildlife Service, Red Bluff, CA. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1133 Poytress et al. 2014. Juvenile Anadromous Fish Monitoring Compendium Report (2002-2012).pdf</a >.

Poytress, W. R., J. J. Gruber, J. P. Van Eenennaam, and M. Gard. 2015. Spatial and Temporal Distribution of Spawning Events and Habitat Characteristics of Sacramento River Green Sturgeon. Transactions of the American Fisheries Society 144(6):1129–1142. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626145.pdf</a >.

Purdy, C., and S. Kubo. 2021. Wallace Weir and Colusa Basin Drain – Fish Salvage Operations. Available: https://www.calfish.org/ProgramsData/ConservationandManagement/CentralValleyMonitoring/SacramentoValleyTributaryMonitoring/YoloandSutterBypasses-Monitoring/WallaceWeirandColusaBasinDrain.aspx</a > Accessed: March 2021.

Pyper, B., J. B. Lando, and C. Justice. 2006. Analysis of Weir Counts and Spawning Surveys of Adult Chinook Salmon in the Stanislaus River. September. Cramer Fish Sciences, Gresham, OR. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Pyper_et_al_2006_Analyses-of-Weir-Counts.pdf</a >

Raleigh, R. F., T. Hickman, R. C. Solomon, and P. C. Nelson. 1984. Habitat Suitability Information: Rainbow Trout. USFWS-BSP, Fort Collins, CO. Available: https://usace.contentdm.oclc.org/digital/collection/p16021coll3/id/240/</a >.

Ray, R. A., and J. L. Bartholomew. 2013. Estimation of transmission dynamics of the Ceratomyxa shasta actinospore to the salmonid host. Parasitology, 140(7):907–916. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Ray&Barthol0mew_2013_FisheriesWildlifeEstimationTransmissionDynamics.pdf</a >

RBI. 2017. Report on the Effects of the California WaterFix on Harmful Algal Blooms in the Delta. Prepared for California Department of Water Resources. March. Elk Grove, CA: Robertson-Bryan, Inc. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/DWR-653.pdf</a >. Accessed: December 10, 2018.

Rose, B. P., and M. G. Mesa. 2012. Effectiveness of Common Fish Screen Materials to Protect Lamprey Ammocoetes. North American Journal of Fisheries Management 32(3):597–603. Available: https://afspubs.onlinelibrary.wiley.com/doi/abs/10.1080/02755947.2012.678965</a >.

Rosenfield, J. A., and R. D. Baxter. 2007. Population Dynamics and Distribution Patterns of Longfin Smelt in the San Francisco Estuary. Transactions of the American Fisheries Society 136:1577–1592. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/sldmwa/rosenfieldandbaxter2007.pdf</a >.

Sabal, M. 2014. Interactive Effects of Non-Native Predators and Anthropogenic Habitat Alterations on Native Juvenile Salmon. Master’s Thesis. University of California, Santa Cruz, Santa Cruz, CA. Available: https://escholarship.org/uc/item/06m1z3kz</a >.

Saiki, M. K., M. R. Jennings, and R. H. Wiedmeyer. 1992. Toxicity of Agricultural Subsurface Drainwater from the San Joaquin Valley, California, to Juvenile Chinook Salmon and Striped Bass. Transactions of the American Fisheries Society 121:73–93. Available: https://www.researchgate.net/publication/239799167_Toxicity_of_Agricultural_Subsurface_Drainwater_from_the_San_Joaquin_Valley_California_to_Juvenile_Chinook_Salmon_and_Striped_Bass</a >.

Saleh, D., and J. Domagalski. 2021. Concentrations, Loads, and Associated Trends of Nutrients Entering the Sacramento–San Joaquin Delta, California. San Francisco Estuary and Watershed Science 19(4). Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Saleh%20and%20Domagalski_2021_Nutrients%20Entering%20the%20Sacramento%E2%80%93San%20Joaquin%20Delta.pdf</a >

Salmon Monitoring Team. 2021. Weekly Assessment of CVP and SWP Delta Operations on ESA-listed Species. Proposed Action Assessment 10/19/2021. Available: https://www.usbr.gov/mp/bdo/docs/samt-weekly-assessment-2021-10-19.pdf</a >. Accessed: December 10, 2021.

Salmonid Scoping Team. 2017. Effects of Water Project Operations on Juvenile Salmonid Migration and Survival in the South Delta. Available: https://www.fisheries.noaa.gov/resource/document/effects-water-project-operations-juvenile-salmonid-migration-and-survival-south</a >.

San Joaquin Tributaries Authority. 2012. Review of Scientific Information Pertaining to SWRCB’s February 2012 Technical Report on the Scientific Basis for Alternative San Joaquin River Flow Objectives. Prepared for State Water Resources Control Board Phase II Comprehensive Review Workshops, Workshop 2, “Bay-Delta Fisheries” to be held October 1–2, 2012. Prepared by D. Demko, M. Hellmair, M. Peterson, S. Ainsley, M. Palmer, and A. Fuller. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/reviewofscientificinformation.pdf</a >.

Sandahl, J.F., Baldwin, D.H., Jenkins, J.J., Scholz, N.L., 2007. A sensory system at the interface between urban stormwater runoff and salmon survival. Environmental Science and Technology 41:2998–3004. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626634.pdf</a >.

Schaffter, R. G. 1997. White Sturgeon Spawning Migrations and Location of Spawning Habitat in the Sacramento River, California. California Fish and Game 83(1):1–20. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Schaffter_1997.pdf</a >

Schick, R. S., A. L. Edsall, and S. T. Lindley. 2005. Historical and Current Distribution of Pacific Salmonids in the Central Valley, CA. Technical Memorandum 369. National Marine Fisheries Service, Santa Cruz, CA. Available: https://people.duke.edu/~rss10/downloads/NOAATM369_resample.pdf</a >.

Schoellhamer, D. H., S. A. Wright, and J. Drexler. 2012. A Conceptual Model of Sedimentation in the Sacramento–San Joaquin Delta. San Francisco Estuary and Watershed Science 10(3). Available: https://www.researchgate.net/publication/285230144_Conceptual_Model_of_Sedimentation_in_the_Sacramento-San_Joaquin_Delta</a >.

Schreier, B. M., M. R. Baerwald, J. L. Conrad, G. Schumer, and B. May. 2016. Examination of Predation on Early Life Stage Delta Smelt in the San Francisco Estuary Using DNA Diet Analysis. Transactions of the American Fisheries Society 145(4): 723–733. https://gvl.ucdavis.edu/sites/g/files/dgvnsk6021/files/inline-files/Schreier et al 2016 – B diet paper.pdf</a >.

Seesholtz, A., B. J. Cavallo, J. Kindopp, and R. Kurth. 2004. Juvenile Fishes of the Lower Feather River: Distribution, Emigration Patterns, and Associations with Environmental Variables. In F. Feyrer, L. R. Brown, R. L. Brown, and J. J. Orsi, editors, Early Life History of Fishes in the San Francisco Estuary and Watershed. American Fisheries Society, Symposium 39: 141–166. Available: https://www.researchgate.net/publication/264533656_Juvenile_fishes_of_the_Lower_Feather_River_Distribution_emigration_patterns_and_associations_with_environmental_variables</a >.

Seesholtz, A. M., M. J. Manuel, and J. P. Van Eenennaam. 2015. First documented spawning and associated habitat conditions for Green Sturgeon in the Feather River, California. Environmental Biology of Fishes 98: 905–912. Available: https://www.researchgate.net/publication/264533648_First_documented_spawning_and_associated_habitat_conditions_for_green_sturgeon_in_the_Feather_River_California</a >.

Setka, J. 2018. Written Testimony of Jose D. Setka, Expert Witness for East Bay Municipal Utility District. Exhibit EBMUD-155. Part 2 of Hearing in the matter of California Department of Water Resources and United States Bureau of Reclamation Request for a Change in Point of Diversion for California WaterFix Before the California State Water Resources Control Board. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/EBMUD/part2/ebmud_155.pdf</a >. Accessed: April 28, 2022.

Siegel, S., C. Enright, C. Toms, C. Enos, and J. Sutherland. 2010. Suisun Marsh Tidal Marsh and Aquatic Habitats Conceptual Model. Chapter 1: Physical Processes. Suisun Marsh Habitat Management, Restoration and Preservation Plan. Final Review Draft. Prepared by WWR and DWR. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Siegel_et_al_2010_Tidal_CM_Chapter_1_Phys_Proc.pdf</a >

Singer, G., and J. Frantzich. 2019. Task 8: (Salmon Telemetry) Adult fall-run Chinook Salmon acoustic telemetry to investigate residence time and movement in the Yolo Bypass. Pages 149–174 in Investigating Yolo Bypass as a Fall Food Web Subsidy for the Delta. CDFW Contract Agreement D1683001 00 Report. Completed and Submitted: 12/5/2019. Sacramento, CA: California Department of Water Resources.

Sisco, J. 2019. Reclaiming the lost population. US Fish and Wildlife Service, Pacific Southwest Region. 18 April. Available: https://www.fws.gov/story/2021-08/reclaiming-lost-population</a > Accessed: 11 May 11, 2020.

Sites Project Authority. 2022a. Sites Project Authority Application to Appropriate Water and Petition for Partial Assignment and Release from Priority. May 10. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Sites%20Project%20Authority_2022_Water%20Rights%20Application%20Submittal.pdf</a >

Sites Project Authority. 2022b. Water Availability Analysis for Sites Reservoir Water Right Application. May 10. Prepared by MBK Engineers for Sites Project Authority, Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Authority_2022_Water%20Availability%20Analysis.pdf</a >

Sites Project Authority and Bureau of Reclamation. 2017. Draft Environmental Impact Report/Environmental Impact Statement. Draft. Prepared by Sites Project Authority and the U.S. Department of the Interior, Bureau of Reclamation, Mid-Pacific Region. Volume 1. Available: https://www.usbr.gov/mp/nepa/nepa_project_details.php?Project_ID=29024</a >

Smith, D. L., J. M. Nestler, G. E. Johnson, and R. A. Goodwin. 2009. Species-Specific Spatial and Temporal Distribution Patterns of Emigrating Juvenile Salmonids in the Pacific Northwest. Reviews in Fisheries Science 18(1):40–64. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Smith_et_al_2009.pdf</a >

Smith, J. M., C. J. Michel, S. A. Hayes, D. A. Demer, G. R. Cutter Jr., S. C. Manugian, I. S. Iglesias, S. T. Lindley, T. P. Quinn, and D. D. Huff. 2017. The Influence of Environmental Covariates on Chinook Salmon Predation Events by Non-native Fish Predators in the San Joaquin River, CA. Chapter 7 in Testing the Effects of Manipulated Predator Densities and Environmental Variables on Juvenile Salmonid Survival in the lower San Joaquin River. June. Agreement Number 4600010100. Prepared for California Department of Water Resources, Bay-Delta Office. Sacramento, CA. Available: https://www.researchgate.net/publication/321589703_The_influence_of_environmental_covariates_on_Chinook_salmon_predation_events_by_non-native_fish_predators_in_the_San_Joaquin_River_CA_in_Testing_the_effects_of_manipulated_predator_densities_and_envir</a >.

Smith, W. E., L. Polansky, and M. L. Nobriga. 2021. Disentangling Risks to an Endangered Fish: Using a State-Space Life Cycle Model to Separate Natural Mortality from Anthropogenic Losses. Canadian Journal of Fisheries and Aquatic Sciences 78(8):1008–1029. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Smith%20et%20al_2021_Disentangling%20Risks.pdf</a >

Sommer, T., and F. Mejia. 2013. A Place to Call Home: A Synthesis of Delta Smelt Habitat in the Upper San Francisco Estuary. San Francisco Estuary and Watershed Science 11(2). Available: https://www.researchgate.net/publication/277621900_A_Place_to_Call_Home_A_Synthesis_of_Delta_Smelt_Habitat_in_the_Upper_San_Francisco_Estuary

Sommer, T. R., R. Baxter, and B. Herbold. 1997. Resilience of Splittail in the Sacramento–San Joaquin Estuary. Transactions of the American Fisheries Society 126:961–976. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/sommer_etal_1997.pdf</a >.

Sommer, T., B. Harrell, M. Nobriga, R. Brown, P. Moyle, W. Kimmerer, and L. Schemel. 2001. California’s Yolo Bypass: Evidence that flood control can be compatible with fisheries, wetlands, wildlife, and agriculture. Fisheries 26(8):6–16. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/sldmwa/sommeretal2001b.pdf</a >.

Sommer, T., L. Conrad, G. O’Leary, F. Feyrer, and W. Harrell. 2002. Spawning and Rearing of Splittail in a Model Floodplain Wetland. Transactions of the American Fisheries Society 131:966–974. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1137 Sommer_et_al_2002_splittail_spawning_floodplain.pdf</a >.

Sommer, T. R., W. C. Harrell, M. L. Nobriga, and R. Kurth. 2003. Floodplain as Habitat for Native Fish: Lessons from California’s Yolo Bypass. Pages 81–87 in P. M. Faber, editor, California Riparian Systems: Processes and Floodplain Management, Ecology, and Restoration. 2001 Riparian Habitat and Floodplains Conference Proceedings. Riparian Habitat Joint Venture, Sacramento, CA. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626776.pdf

Sommer, T. R., W. C. Harrell, A. Mueller-Solger, B. Tom, and W. Kimmerer. 2004. Effects of Flow Variation on Channel and Floodplain Biota and Habitats of the Sacramento River, California, USA. Aquatic Conservation: Marine and Freshwater Ecosystems 14: 247–261. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/COSJ et al/part2sur_rebuttal/SJC_511.pdf</a >.

Sommer, T., W. Harrell, and M. Nobriga. 2005. Habitat Use and Stranding Risk of Juvenile Chinook Salmon on a Seasonal Floodplain. North American Journal of Fisheries Management 25: 1493–1504. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/0.7.115.29744-000001.pdf</a >.

Sommer, T. R., C. Armor, R. Baxter, R. Breuer, L. Brown, M. Chotkowski, S. Culberson, F. Feyrer, M. Gingras, B. Herbold, W. Kimmerer, A. Mueller-Solger, M. Nobriga, and K. Souza. 2007. The Collapse of Pelagic Fishes in the Upper San Francisco Estuary. Fisheries 32: 270–277. Available: https://www.researchgate.net/publication/233182962_The_Collapse_of_Pelagic_Fishes_in_the_Upper_San_Francisco_Estuary_El_Colapso_de_los_Peces_Pelagicos_en_La_Cabecera_Del_Estuario_San_Francisco</a >.

Sommer, T. R., W. C. Harrell, Z. Matica, and F. Feyrer. 2008. Habitat Associations and Behavior of Adult and Juvenile Splittail (Cyprinidae: Pogonichthys macrolepidotus) in a Managed Seasonal Floodplain Wetland. San Francisco Estuary and Watershed Science 5(2):Article 3. Available: http://www.escholarship.org/uc/item/85r15611</a >.

Sommer, T., F. H. Mejia, M. L. Nobriga, F. Feyrer, and L. Grimaldo. 2011. The Spawning Migration of Delta Smelt in the Upper San Francisco Estuary. San Francisco Estuary and Watershed Science 9(2). Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626735.pdf</a >.

Sommer, T.R., W.C. Harrell, and F. Feyrer. 2014. Large-Bodied Fish Migration and Residency in a Flood Basin of the Sacramento River, California, USA. Ecology of Freshwater Fish 23: 414–423.

Sommer, T., B. Schreier, J. L. Conrad, L. Takata, B. Serup, R. Titus, C. Jeffres, E. Holmes, and J. Katz. 2020. Farm to Fish: Lessons from a Multi-Year Study on Agricultural Floodplain Habitat. San Francisco Estuary and Watershed Science 18(3). https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Sommer%20et%20al_2020_Farm%20to%20Fish.pdf</a >

State Water Resources Control Board. 1999. Water Right Decision 1641. December 29. Available: https://cawaterlibrary.net/document/water-rights-decision-1641-d-1641/</a >. Accessed: January 31, 2023.

State Water Resources Control Board. 2006. Water Quality Control Plan for the San Francisco Bay/Sacramento-San Joaquin Delta Estuary. December 13. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/wq_control_plans/2006wqcp/</a >. Accessed: March 21, 2023.

State Water Resources Control Board. 2018a. The 303(d) List of Impaired Water Bodies. California Regional Water Quality Control Board San Francisco Bay Region. Available: https://www.waterboards.ca.gov/water_issues/programs/water_quality_assessment/2018_integrated_report.html</a >.

State Water Resources Control Board. 2018b. Water Quality Control Plan for the San Francisco Bay/Sacramento-San Joaquin Delta Estuary. December 12. Available: https://www.waterboards.ca.gov/plans_policies/docs/2018wqcp.pdf</a >. Accessed: October 23, 2020.

Stevens, D. E., D. W. Kohlhorst, L. W. Miller, and D. W. Kelley. 1985. The Decline of Striped Bass in the Sacramento-San Joaquin Estuary, California. Transactions of the American Fisheries Society 114:12–30. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/cspa/spprt_docs/1987/cspa_exh40.pdf</a >.

Stevens, D. E., H. K. Chadwick, and R. E. Painter. 1987. American shad and striped bass in California’s Sacramento-San Joaquin River system. American Fisheries Society Symposium 1:66–78. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1094 Stevens et al_1987_American Shad and Striped Bass_AFS Symp.pdf</a >.

Stewart, A. R., S. N. Luoma, C. E. Schlekat, M. A. Doblin, and K. A. Hieb. 2004. Food Web Pathway Determines How Selenium Affects Aquatic Ecosystems: A San Francisco Bay Case Study. Environmental Science & Technology 38:4519–4526. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626651.pdf

Stompe, D. K., J. D. Roberts, C. A. Estrada, D. M. Keller, N. M. Balfour, and A. I. Benet. 2020. Sacramento River Predator Diet Analysis: A Comparative Study. San Francisco Estuary and Watershed Science 18(1). Available: https://escholarship.org/content/qt3sb5g6w4/qt3sb5g6w4_noSplash_a14a7afb04b6a9fc7824951f21f3d07f.pdf?t=q74ciq</a >.

Strange, J. S. 2010. Upper Thermal Limits to Migration in Adult Chinook Salmon: Evidence from the Klamath River Basin. Transactions of the American Fisheries Society 139: 1091–1108. Available: https://www.researchgate.net/publication/228637466_Upper_Thermal_Limits_to_Migration_in_Adult_Chinook_Salmon_Evidence_from_the_Klamath_River_Basin</a >.

Strong, A. L., M. M. Mills, I. B. Huang, G. L. van Dijken, S. E. Driscoll, G. Berg, R. M. Kudela, S. G. Monismith, C. A. Francis, and K. R. Arrigo. 2021. Response of Lower Sacramento River Phytoplankton to High-Ammonium Wastewater Effluent. Elementa: Science of the Anthropocene 9(1). DOI: 10.1525/elementa.2021.040. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Strong_etal_2021_Response%20of%20Lower%20Sacramento%20River%20phytoplankton%20to%20high-ammonium%20wastewater%20effluent.pdf</a >

Swanson, C., T. Reid, P. S. Young, and J. J. Cech Jr. 2000. Comparative environmental tolerances of threatened delta smelt (Hypomesus transpacificus) and introduced wakasagi (H. nipponensis) in an altered California estuary. Oecologia 123(3):384–390. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/swanson_et_al_2000.pdf

Swanson, C., P. S. Young, and J. J. Cech. 2004. Swimming in Two-Vector Flows: Performance and Behavior of Juvenile Chinook Salmon near a Simulated Screened Water Diversion. Transactions of the American Fisheries Society 133(2):265–278. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Swanson_et_al_2004_Chinook_swimming_performance.pdf</a >

Suisun Ecological Workgroup. 2001. Suisun Ecological Workgroup Final Report to the State Water Resources Control Board. Available: https://digitalcommons.law.ggu.edu/caldocs_agencies/229/</a >.

Takata, L., T. R. Sommer, J. L. Conrad, and B. M. Schreier. 2017. Rearing and Migration of Juvenile Chinook Salmon (Oncorhynchus tshawytscha) in a Large River Floodplain. Environmental Biology of Fishes 100(9):1105–1120. Available: https://link.springer.com/article/10.1007/s10641-017-0631-0</a >.

Tamburello, N., B. M. Connors, D. Fullerton, and C. C. Phillis. 2019. Durability of Environment–Recruitment Relationships in Aquatic Ecosystems: Insights from Long‐Term Monitoring in a Highly Modified Estuary and Implications for Management. Limnology and Oceanography 64(S1):S223–S239. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Tamburello%20et%20al_2019_Durability%20of%20Environment%E2%80%93Recruitment%20Relationships.pdf</a >

Tehama-Colusa Canal Authority. 2012. Fish Passage Improvement Project at the Red Bluff Diversion Dam. Brochure published by TCCA. 4pp. Available: https://www.tccanal.com/RBDD-Bro-Sept2012-NoCrop.pdf</a >.

The Bay Institute. 1998. From the Sierra to the Sea: The Ecological History of the San Francisco Bay-Delta Watershed. San Francisco, CA: The Bay Institute of San Francisco. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/sldmwa/thebayinstitutefromthesierratotheseatheecologica.pdf</a >.

The Nature Conservancy. 2007a. Sacramento River Ecological Flows Study. Gravel Study Final Report. Available: https://www.researchgate.net/publication/317267533_Sacramento_River_ecological_flows_study_final_report

The Nature Conservancy. 2007b. Linking Biological Responses to River Processes: Implications for Conservation and Management of the Sacramento River—A Focal Species Approach. Final Report. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/The%20Nature%20Conservancy_2007_Linking%20Biological%20Responses%20to%20River%20Processes.pdf</a >

Thomas, A. E., J. L. Banks, and D. C. Greenland. 1969. Effect of Yolk Sac Absorption on the Swimming Ability of Fall Chinook Salmon. Transactions of the American Fisheries Society 98(3):406–410. Copyright protected. See introduction for more information Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Thomas_et_al_1969_Effect%20of%20Yolk%20Sac%20Absorption%</a >

Thomas, M. J., M. L. Peterson, N. Friedenberg, J. P. Van Eenennaam, J. R. Johnson, J. J. Hoover, and A. P. Klimley. 2013. Stranding of Spawning Run Green Sturgeon in the Sacramento River: Post-Rescue Movements and Potential Population-Level Effects. North American Journal of Fisheries Management 33(2): 287–297. Available: https://www.researchgate.net/publication/263024427_Stranding_of_Spawning_Run_Green_Sturgeon_in_the_Sacramento_River_Post-Rescue_Movements_and_Potential_Population-Level_Effects</a >.

Thomson, J. R., W. J. Kimmerer, L. R. Brown, K. B. Newman, R. Mac Nally, W. A. Bennett, F. Feyrer, and E. Fleishman. 2010. Bayesian Change Point Analysis of Abundance Trends for Pelagic Fishes in the Upper San Francisco Estuary. Ecological Applications 20(5):1431–1448. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/thomson_etal_2010.pdf</a >.

Tierney, K. B., D. H. Baldwin, T. J. Hara, P. S. Ross, N. L. Scholz, and C. J. Kennedy. 2010. Olfactory Toxicity in Fishes. Aquatic Toxicology 96:2–26. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/sldmwa/tierneyetal2009.pdf</a >.

Toft, J. D., C. A. Simenstad, J. R. Cordell, and L. F. Grimaldo. 2003. The Effects of Introduced Water Hyacinth on Habitat Structure, Invertebrate Assemblages, and Fish Diets. Estuaries 26(3): 746–758. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/sfwc/spprt_docs/sfwc_exh3_toft.pdf</a >.

Tucker, M. E., C. D. Martin, and P. D. Gaines. 2003. Spatial and Temporal Distribution of Sacramento Pikeminnow and Striped Bass at the Red Bluff Diversion Complex, including the Research Pumping Plant, Sacramento River, California: January, 1997 to August, 1998. Red Bluff Research Pumping Plant Report Series. U.S. Fish and Wildlife Service, Red Bluff, CA. Available: https://calisphere.org/item/ark:/86086/n2fb5205/

Twardochleb, L., A. Maguire, L. Dixit, M. Bedwell, J. Orlando, M. MacWilliams, A. Bever, and B. Davis. 2021. North Delta Food Subsidies Study: Monitoring Food Web Responses to the North Delta Flow Action, 2019 Report. California Department of Water Resources, Division of Environmental Services. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Twardochleb_et_al_2019%20Report%20North%20Delta%20Food%20Subsidies%20Study.pdf</a >

U.S. Army Corps of Engineers, Bureau of Reclamation, Sacramento Area Flood Control Agency, and California Central Valley Flood Protection Board. 2012. Folsom Dam Modification Project Approach Channel, Draft Supplemental Environmental Impact Statement/ Environmental Impact Report. July. Available: https://www.spk.usace.army.mil/Portals/12/documents/civil_works/JFP/FolsomDamMods_ApproachChannel_FSEIS-EIR.pdf</a >.

U.S. Army Engineer Research and Development Center. 2017. Scenario Analysis of Fremont Weir Notch – Integration of Engineering Designs, Telemetry, and Flow Fields. Technical memorandum for the Yolo Bypass Salmonid Habitat Restoration and Fish Passage Project. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/USACE_2017_Scenario%20Analysis%20of%20Fremont%20Weir%20Notch.pdf</a >

U.S. Environmental Protection Agency. 2010. The SPCC Rule and Recent Amendments Presentation. November. Available: https://www.epa.gov/oil-spills-prevention-and-preparedness-regulations/spill-prevention-control-and-countermeasure-16</a >. Accessed: June 29, 2021.

U.S. Fish and Wildlife Service. 1985. Flow Needs of Chinook Salmon in the Lower American River. Final Report on the 1981 Lower American River Flow Study. Sacramento, CA. Prepared for Bureau of Reclamation, Sacramento, CA.

U.S. Fish and Wildlife Service. 1993. Mitigation Policy: 501 FW 2. Series Interagencies Activities. February. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/USFWS_1993_Manual_501_FW2_Mitigation_Policy.pdf</a >

U.S. Fish and Wildlife Service. 2003a. Flow-Habitat Relationships for steelhead and fall, late-fall, and winter-run Chinook salmon spawning in the Sacramento River between Keswick Dam and Battle Creek. February 4, 2003. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/USFWS_2003a_Sac_Kswk_to_BattleCk_Spawning_WUA.pdf</a >

U.S. Fish and Wildlife Service. 2003b. Comparison of PHABSIM and 2-D Modeling of Habitat for Steelhead and Fall-run Chinook Salmon Spawning in the Lower American River. February 4, 2003. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/USFWS_2003a_Sac_Kswk_to_BattleCk_Spawning_WUA.pdf</a >

U.S. Fish and Wildlife Service. 2005a. Flow Habitat Relationships for Fall-run Chinook Salmon Spawning in the Sacramento River between Battle Creek and Deer Creek. Prepared by Staff of Energy Planning and Instream Flow Branch. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/USFWS_2005a_Sac_Kswk_to_BattleCk_Juv_Rear_WUA.pdf</a >

U.S. Fish and Wildlife Service. 2005b. Flow-Habitat Relationships for Chinook Salmon Rearing in the Sacramento River between Keswick Dam and Battle Creek. Prepared by Staff of Energy Planning and Instream Flow Branch. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/USFWS%202005b.%20Sacramento%20River%20Fall-Run%20Downstream%20Spawning%20WUA.pdf</a >

U.S. Fish and Wildlife Service. 2006. Relationships between Flow Fluctuations and Redd Dewatering and Juvenile Stranding for Chinook Salmon and steelhead in the Sacramento River between Keswick Dam and Battle Creek. Prepared by Staff of Energy Planning and Instream Flow Branch. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/USFWS_2006_Sac_dewatering_stranding_final_report%20.pdf</a >

U.S. Fish and Wildlife Service. 2008. Biological Opinion on the Coordinated Operations of the Central Valley Project and State Water Project in California.

U.S. Fish and Wildlife Service. 2011a. Flow-Habitat Relationships for Fall-Run Chinook Salmon and Steelhead/Rainbow Trout Spawning in Clear Creek between Clear Creek Road and the Sacramento River. Copyright protected. See introduction for more information Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/USFWS%202011.%20Clear%20Creek%20Lower%20Spawning%20Final%20Report,%20steelhead%20and%20fall-un.pdf</a >

U.S. Fish and Wildlife Service. 2011b. Biological Assessment of Artificial Propagation at Coleman National Fish Hatchery and Livingston Stone National Fish Hatchery: Program Description and Incidental Take of Chinook Salmon and Steelhead. July. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/USFWS_2011b_BA_artificial_prop_CNFH_LSNFH.pdf</a >

U.S. Fish and Wildlife Service. 2012. Pacific Lamprey (Entospenus tridentatus) Assessment and Template for Conservation Measures in California. U.S. Fish and Wildlife Service. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/USFWS_2012.pdf</a >

U.S. Fish and Wildlife Service. 2016. Central Valley Improvement Act Fisheries Investigations. Annual Progress Report. Prepared by Staff of Anadromous Fish Restoration Program. Lodi, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/USFWS_2016.%20CVPIA%20Annual%20Progress%20Report%20Fiscal%20Year%202016.pdf</a >

U.S. Fish and Wildlife Service. 2019. Biological Opinion for the Reinitiation of Consultation on the Long Term Operation of the Central Valley Project and State Water Project. USFWS Pacific Southwest Region. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/USFWS_2019_ROC_BO_final.pdf</a >

U.S. Fish and Wildlife Service. 2020. 700 Winter-Run Chinook Salmon Return to Battle Creek. October 22. Available: https://www.fws.gov/news/ShowNews.cfm?ref=700-winter-run-chinook-salmon-return-to-battle-creek&_ID=36797</a >. Accessed: January 28, 2021.

U.S. Geological Survey. 2023. Dissolved Oxygen Data for Station USGS 11455140 Toe Drain A Liberty Island Nr Courtland CA. Available: https://nwis.waterdata.usgs.gov/usa/nwis/uv/?cb_00010=on&cb_00060=on&cb_00065=on&cb_00095=on&cb_00300=on&cb_00301=on&cb_00400=on&cb_00480=on&cb_32295=on&cb_32316=on&cb_63160=on&cb_63680=on&cb_63680=on&cb_70969=on&cb_72137=on&cb_72255=on&cb_99133=on&cb_99409=on&format=gif_default&site_no=11455140&legacy=1&period=&begin_date=2018-07-01&end_date=2018-10-31</a >. Accessed: January 10, 2023.

Van Nieuwenhuyse, E. E. 2007. Response of Summer Chlorophyll Concentration to Reduced Total Phosphorus Concentration in the Rhine River (Netherlands) and the Sacramento–San Joaquin Delta (California, USA). Canadian Journal of Fisheries and Aquatic Sciences 64:1529–1542. Copyright protected. See introduction for more information Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/VanNie_2007_Rhine.pdf</a >

Verhille, C. E., J. B. Poletto, D. E. Cocherell, B. DeCourten, S. Baird, J. J. Cech, and N. A. Fangue. 2014. Larval Green and White Sturgeon Swimming Performance in Relation to Water-Diversion Flows. Conservation Physiology 2(1):cou031. Available: https://core.ac.uk/download/pdf/188134284.pdf</a >

Vogel, D.A. 2007. 2006 Biological evaluation of the fish screens at the Glenn-Colusa Irrigation District’s Sacramento River pump station. Report prepared for the multi-agency Technical Oversight Committee. Natural Resource Scientists, Inc. June 2007. 24 p. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Vogel_2007_2006%20Biological%20evaluation%20of%20the%20fish%20screens%20at%20the%20Glenn-Colusa%20Irrigation%20District%E2%80%99s%20Sacramento%20River%20pump%20station.pdf</a >

Vogel, D. A. 2008. Biological Evaluations of the Fish Screens at the Glenn–Colusa Irrigation District’s Sacramento River Pump Station: 2002–2007. Natural Resource Scientists, Inc., Red Bluff, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Vogel_2008_Final%20GCID%20Fish%20Screen%20Report.pdf</a >

Vogel, D. A. 2011. Insights into the Problems, Progress, and Potential Solutions for Sacramento River Basin Native Anadromous Fish Restoration. Prepared for Northern California Water Association and Sacramento Valley Water Users. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Vogel_2011_Insights_Anadromous_Fish.pdf</a >

Vogel, D. 2013. Evaluation of Fish Entrainment in 12 Unscreened Sacramento River Diversions. Final Report. Prepared for CVPIA Anadromous Fish Screen Program (U.S. Fish and Wildlife Service and Bureau of Reclamation) and Ecosystem Restoration Program (California Department of Fish and Wildlife, U.S. Fish and Wildlife Service, and National Marine Fisheries Service). Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Vogel_2013_Evaluation%20of%20Fish%20Entrainment%20in%2012%20Unscreened%20Sacramento%20River%20Diversions_AFSP.pdf</a >

Vogel, D. A., and K. R. Marine. 1991. Guide to Upper Sacramento River Chinook Salmon Life History. CH2M HILL, Redding, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Vogel_Marine_1991.pdf</a >

Vogel, D. A., and K. R. Marine. 1995. 1995 Evaluation of Juvenile Chinook Salmon Transport Timing in the Vicinity of the New Fish Screens at the Glenn-Colusa Irrigation District’s Sacramento River Pump Station. November. Natural Resource Scientists, Inc., Red Bluff, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Vogel_Marine_1995.pdf</a >

Vroom, J., M. Van der Wegen, R. C. Martyr‐Koller, and L. V. Lucas. 2017. What Determines Water Temperature Dynamics in the San Francisco Bay‐Delta System? Water Resources Research 53(11):9901–9921. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Vroom%20et%20al_2017_Water%20Temperature%20Dynamics.pdf</a >

Wagner, R. W., M. Stacey, L. R. Brown, and M. Dettinger. 2011. Statistical Models of Temperature in the Sacramento–San Joaquin Delta under Climate-Change Scenarios and Ecological Implications. Estuaries and Coasts 34:544–556. DOI 10.1007/s12237-010-9369-z. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Wagner_et_al_2011.pdf</a >

Walters, A. W., D. M. Holzer, J. R. Faulkner, C. D. Warren, P. D. Murphy, and M. M. McClure. 2012. Quantifying Cumulative Entrainment Effects for Chinook Salmon in a Heavily Irrigated Watershed. Transactions of the American Fisheries Society 141(5):1180–1190. Copyright protected. See introduction for more information Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Walters_et_al_2012_Quantifying%20Cumulative%20Entrainment%20Effects%20for%20Chinook%20Salmon%20in%20a%20Heavily%20Irrigated%20Watershed_TAFS.pdf</a >

Wang, J. C. S. 2006. Early Life History Comparison of the Green Sturgeon, Acipenser medirostris, and White Sturgeon, Acipenser transmontanus, of the Sacramento-San Joaquin River Delta, California. Tracy Technical Bulletin 2006-1. U.S. Department of the Interior, Bureau of Reclamation, Mid-Pacific Region, Denver, CO. https://usbr.gov/mp/TFFIP/docs/ttb-2006-1-early-life-history-comparison.pdf</a >

Water Forum. 2005. Addendum to the Report Titled “Impacts on Lower American River Salmonids and Recommendations Associated with Folsom Reservoir Operations to Meet Delta Water Quality Objectives and Demands.” Prepared for City-County Office of Metropolitan Water Planning, Sacramento, CA. Prepared by Surface Water Resources, Inc., Sacramento, CA. September. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Water%20Forum_2005_Addendum.pdf</a >

Waters, T. 1995. Sediment in Streams: Sources, Biological Effects, and Control. Copyright protected. See introduction for more information.

Weston, D. P., J. You, and M. J. Lydy. 2004. Distribution and Toxicity of Sediment-Associated Pesticides in Agriculture-Dominated Water Bodies of California’s Central Valley. Environmental Science and Technology 38: 2752–2759. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Weston_et_al_2004_dist-tox-sediment.pdf</a >

Weston, D. P., A. M. Asbell, S. A. Lesmeister, S. J. Teh, and M. J. Lydy. 2014. Urban and Agricultural Pesticide Inputs to a Critical Habitat for the Threatened Delta Smelt (Hypomesus transpacificus). Environmental Toxicology and Chemistry 33:920–929. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Weston_et_al_2014_Urban%20and%20agricultural%20pesticide%20inputs%20to%20a%20critical%20habitat%20for%20the%20threatened%20delta%20smelt_Env_Tox_Chem.pdf</a >

Weston, D. P., C. Moschet, T. M. Young, N. Johanif, H. C. Poynton, K. M. Major, R. E. Connon, and S. Hasenbein. 2019. Chemical and Toxicological Effects on Cache Slough after Storm-Driven Contaminant Inputs. San Francisco Estuary and Watershed Science 17(3). Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Weston_et_al_2019_Chemical%20and%20Toxicological%20Effects%20on%20Cache%20Slough%20after%20Storm-Driven%20Contaminant%20Inputs_SFEWS.pdf</a >

Whipple, A. A., R. M. Grossinger, D. Rankin, B. Stanford, and R. A. Askevold. 2012. Sacramento–San Joaquin Delta Historical Ecology Investigation: Exploring Pattern and Process. Prepared for the California Department of Fish and Game and Ecosystem Restoration Program. Historical Ecology Program Publication 672, San Francisco Estuary Institute-Aquatic Science Center, Richmond, California. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Whipple_etal_2012_Sacramento_San_Joaquin_Delta_Historical_Ecology.pdf</a >

Whipple A., T. Grantham, G. Desanker, L. Hunt, A. Merrill, B. Hackenjos, and R. Askevold. 2019. Chinook Salmon Habitat Quantification Tool: User Guide (Version 1.0). Prepared for American Rivers. Funded by the Natural Resources Conservation Service Conservation Innovation Grant (#69-3A75-17-40), Water Foundation and Environmental Defense Fund. A report of SFEI-ASC’s Resilient Landscapes Program, Publication #953. San Francisco Estuary Institute, Richmond, CA. Available: https://www.sfei.org/sites/default/files/biblio_files/SalmonHQT_UserGuide_2019.pdf

Wilkerson, F. P., R. C. Dugdale, V. E. Hogue, and A. Marchi. 2006. Phytoplankton Blooms and Nitrogen Productivity in San Francisco Bay. Estuaries and Coasts 29:401–416. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Wilkerson_et_al_2006_Phytoplankton%20blooms%20and%20nitrogen%20productivity%20in%20San%20Francisco%20Bay_Estuaries_Coasts.pdf</a >

Williams, J. G. 2006. Central Valley Salmon: A Perspective on Chinook and Steelhead in the Central Valley of California. San Francisco Estuary and Watershed Science 4. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Williams_2006_CV_Salmon.pdf</a >

Windell, S., P. L. Brandes, J. L. Conrad, J. W. Ferguson, P. A. L. Goertler, B. N. Harvey, J. Heublein, J. A. Israel, D. W. Kratville, J. E. Kirsch, R. W. Perry, J. Pisciotto, W. R. Poytress, K. Reece, B. G. Swart, and R. C. Johnson. 2017. Scientific Framework for Assessing Factors Influencing Endangered Sacramento River Winter-Run Chinook Salmon (Oncorhynchus tshawytscha) across the Life Cycle. NOAA Technical Memorandum NMFS-SWFSC-586. NOAA National Marine Fisheries Service, Southwest Fisheries Science Center Fisheries Ecology Division Santa Cruz, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Windell_et_al_2017_Scientific%20framework%20for%20assessing%20factors%20influencing%20endangered%20Sacramento%20River%20winter-run%20Chinook%20salmon.pdf</a >

Wood, M. L., P. W. Morris, J. Cooke, and S. J Louie. 2010. Amendments to the Water Quality Control Plan for the Sacramento River and San Joaquin River Basins for the Control of Methylmercury and Total Mercury in the Sacramento-San Joaquin Delta Estuary. Staff Report. California Central Valley Regional Water Quality Control Board, Rancho Cordova, California. Available: https://www.waterboards.ca.gov/centralvalley/water_issues/tmdl/central_valley_projects/delta_hg/archived_delta_hg_info/april_2010_hg_tmdl_hearing/apr2010_bpa_staffrpt_final.pdf</a >.

Wright, S. A., and D. H. Schoellhamer. 2004. Trends in the Sediment Yield of the Sacramento River, California, 1957–2001. San Francisco Estuary and Watershed Science 2(2). Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Wright_Schoellhamer_2004_Trends%20in%20the%20Sediment%20Yield%20of%20the%20Sacramento%20River,%20California,%201957-2001_SFEWS.pdf</a >

Wright, S. A., and D. H. Schoellhamer. 2005. Estimating sediment budgets at the interface between rivers and estuaries with application to the Sacramento-San Joaquin River Delta. Water Resources Research 41(9):W09428. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Wright_Schoellhamer_2005_Estimating%20sediment%20budgets%20at%20the%20interface%20between%20rivers%20and%20estuaries%20with%20application%20to%20the%20Sacramento-San%20Joaquin%20River%20Delta_WRR.pdf</a >

Wyman, M.T., M.J. Thomas, R.R. McDonald, A.R. Hearn, R.D. Battleson, E.D. Chapman, P. Kinzel, J.T. Minear, E.A. Mora, J.M. Nelson, M.D. Pagel, and A.P. Klimley. 2018. Fine-scale habitat selection of green sturgeon (Acipenser medirostris) within three spawning location in the Sacramento River, California. Canadian Journal of Fisheries and Aquatic Sciences 75:779–791. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Wyman%20et%20al.%202018.%20Green%20sturgeon%20spawning%20habitat%20WUA%20in%20the%20Sac%20River..pdf</a >

Yates, E. B. 1989. Water Quality and Supply on Cortina Rancheria, Colusa County, California. Water-Resources Investigations Report 89-4004. U.S. Geological Survey. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Yates_1989_Water_Quality_and_Supply.pdf</a >

Yoshiyama, R. M., E. R. Gerstung, F. W. Fisher, and P. B. Moyle. 1996. Historical and Present Distribution of Chinook Salmon in the Central Valley Drainage of California in Sierra Nevada Ecosystem Project. Final Report to Congress. Volume III: Assessments, Commissioned Reports, and Background Information. University of California, Davis, Centers for Water and Wildland Resources. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/YoshiyamaEtAl_1996_hist-present-dist-CHN-CV-drainage.PDF</a >

Yoshiyama, R. M., E. R. Gerstung, F. W. Fisher, and P. B. Moyle. 2001. Historical and Present Distribution of Chinook Salmon in the Central Valley Drainage of California. Contributions to the Biology of Central Valley Salmonids. California Department of Fish and Game Fish Bulletin 179(1): 71–176. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/YoshiyamaEtAl2001_histandpresent-dist-CHN_CV-drainage-CA.pdf</a >

Zajanc, D., S. H. Kramer, N. Nur, and P. A. Nelson. 2013. Holding Behavior of Chinook Salmon (Oncorhynchus tshawytscha) and Steelhead (O. mykiss) Smolts, as Influenced by Habitat Features of Levee Banks, in the Highly Modified Lower Sacramento River, California. Environmental Biology of Fishes 96(2-3):245–256. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Zajanc_et_al_2013_Holding%20behavior%20of%20Chinook%20salmon%20Oncorhynchus%20tshawytscha%20and%20steelhead%20O.%20mykiss%20smolts,%20as%20influenced%20by%20habitat%20features%20of%20levee%20banks_EBF.pdf</a >

Zeug, S. C. and B. J. Cavallo. 2013. Influence of Estuary Conditions on the Recovery Rate of Coded-Wire-Tagged Chinook Salmon (Oncorhynchus tshawytscha) in an Ocean Fishery. Ecology of Freshwater Fish 22(1):157–168. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Zeug%20and%20Cavallo_2013_Influence%20of%20estuary%20conditions%20on%20the%20recovery%20rate%20of%20coded-wire-tagged%20Chinook%20salmon%20in%20an%20ocean%20fishery_Ecol_FW_Fish.pdf</a >

Zydlewski, G. B., and J. R. Johnson. 2002. Response of Bull Trout Fry to Four Types of Water Diversion Screens. North American Journal of Fisheries Management 22(4):1276–1282. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Zydlewski&Johnson_2002_Bull_Trout_Fry_Water_Diversion_Screens.pdf</a >

Personal Communications

Beccio, Marc. Environmental Scientist. California Department of Fish and Wildlife, Rancho Cordova, CA. August 12, 2021. Email with unpublished relative abundance of juvenile green sturgeon in the San Francisco Bay Delta Estuary, provided to Monique Briard and Sophie Unger, ICF, Sacramento CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Beccio_2021_Pers%20Comm_Juvenile%20Green%20Sturgeon.pdf</a >

Kapla, James. Principal Project Manager, Jacobs, Bellevue, WA. May 21, 2019—Email describing potential Delevan discharge velocity and infrastructure requirements provided to Marin Greenwood, Aquatic Ecologist, ICF, Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Kapla_2019_perscommtoMarinGreenwood.pdf</a >

Kindopp, Jason. Senior DWR Environmental Scientist. California Department of Water Resources. April 23, 2021—Email to Sophie Unger, Senior Fish Biologist, ICF, Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Kindopp_2021_Pers%20Comm_April%2023%202021%20Email%20to%20S%20Unger.pdf</a >

Kline, Phil. IT Support. Glenn-Colusa Irrigation District, Willows, CA. March 14, 2019—GlennColusa Irrigation District data provided to John Spranza, Senior Ecologist/Regulatory Specialist, HDR, Sacramento, CA, via Google documents link.

Michel, Cyril. Assistant Project Scientist. University of California, Santa Cruz; affiliated with Southwest Fisheries Science Center – Fisheries Ecology Division, National Marine Fisheries Service, Santa Cruz, CA. October 26, 2020—Comment during Sites Joint Aquatic Workshop #1. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Michel_2020_Person%20Comm_Sites%20Joint%20Aquatic%20Workshop%201%20Draft%20Meeting%20Notes.pdf</a >

Perry, Russell. Research Fisheries Biologist, Quantitative Fisheries Ecology Section, USGS Western Fisheries Research Center, Columbia River Research Laboratory, Cook, WA. June 18, 2019—Email containing Excel file <North Delta Routing Management Tool v2.1.xlsx> sent to Marin Greenwood, Aquatic Ecologist, ICF, Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Perry_2019_pers-comm_NorthDeltaRoutingMgmtTool.pdf</a >

Seesholtz, Alicia. Staff Environmental Scientist. California Department of Water Resources, Sacramento, CA. February 2021—Phone conversations with Rick Wilder, Senior Environmental Scientist, ICF, Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Seesholtz_pers_comm_20210408.pdf

Chapter 12

AECOM. 2020a. Geology and Seismicity Technical Memorandum. Sites Program Management Team. August 18. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch11_Aquatic_Bio/Seesholtz_pers_comm_20210408.pdf</a >

AECOM. 2020b. Main Dams and Saddle Dams Technical Memorandum. Task Order No. 1, Task HR2.92. Sites Program Management Team. August 19, 2020. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch12_Geo_Soils/AECOM%202020b%20Main%20&%20Saddle%20Dams%20TM_HR%202.92_Final.pdf</a >

Argus, D., and R. Gordon. 2001. Present Tectonic Motion across the Coast Ranges and San Andreas Fault System in Central California. Geological Society of America Bulletin. December. Volume 113: p. 1580–1592. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch12_Geo_Soils/Argus&Gordon2001_GSAB01.pdf</a >

Bureau of Reclamation. 2015. Design Standards No. 13 Embankment Dams, Chapter 13: Seismic Analysis and Design, Phase 4: Final. Technical Service Center. May. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch12_Geo_Soils/BoR_2015_Design%20Standards%20No.%2013%20Embankment%20Dams.pdf</a >

California Department of Transportation. 2020. Seismic Design Criteria. Version 2.0. Available: https://dot.ca.gov/-/media/dot-media/programs/engineering/documents/seismicdesigncriteria-sdc/202007-seismicdesigncriteria-v2-a11y.pdf</a >

California Department of Water Resources. 2003. Geologic Feasibility Report, Sites Reservoir Project, Project Geology Report No. 94-30-02. Division of Engineering. July. Sacramento, CA. Available: https://sitesproject.org/wp-content/uploads/2018/09/Geologic-Feasibility-Report-Sites-Reservoir-Project.pdf</a >

California Geological Survey. 2002. California geomorphic provinces. Note 36. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch12_Geo_Soils/CGS%202002_CA%20Geomorph%20Provinces.pdf</a >

California Geological Survey. 2004. Special Publication 118, Recommended Criteria for Delineating Seismic Hazard Zones in California. Available: http://www.conservation.ca.gov/cgs/shzp/webdocs/Documents/SP118_Revised.pdf</a >. Last revised: April 2004. Accessed: October 24, 2020.

California Geological Survey. 2008a. Probabilistic Seismic Hazards Ground Motion Interpolator. Available: https://www.conservation.ca.gov/cgs/Pages/PSHA/ground-motion-interpolator.aspx</a >. Accessed: October 23, 2020.

California Geological Survey. 2008b. Guidelines for Evaluating and Mitigating Seismic Hazards in California. (Special Publication 117A.) Available: http://www.conservation.ca.gov/cgs/shzp/webdocs/Documents/sp117.pdf</a >. Accessed: October 24, 2020.

California Geological Survey. 2010. 2010 Fault Activity Map of California. California Geological Survey, Geologic Data Map No. 6. Compilation and Interpretation by Charles W. Jennings and William A. Bryant. Graphics by Milind Patel, Ellen Sander, Jim Thompson, Barbara Wanish, and Milton Fonseca. Available: https://maps.conservation.ca.gov/cgs/fam/app/</a >. Accessed: October 23, 2020.

California Geological Survey. 2016. Earthquake shaking potential for California. Map Sheet 48. Sacramento, CA. Available: https://www.conservation.ca.gov/cgs/Documents/Publications/Map-Sheets/MS_048.pdf</a >.

California Geological Survey. 2020. CGS Information Warehouse: Landslides. Available: < https://maps.conservation.ca.gov/cgs/informationwarehouse/</a >>. Accessed: December 9, 2020.

Fraser, W. A., and J. K. Howard. 2002. Guidelines for Use of the Consequence–Hazard Matrix and Selection of Ground Motion Parameters. The Resources Agency, Department of Water Resources, Division of Safety of Dams. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch12_Geo_Soils/Fraser_2002_Guide.pdf</a >

Helley, E. J., and D. S. Harwood. 1985. Geologic map of the late Cenozoic Deposits of the Sacramento Valley and northern Sierran Foothills, California: U.S. Geological Survey Miscellaneous Field Studies Map MF-1790, scale 1:62,500, 5 sheets. Last revised: October 22, 2007. Available: https://pubs.usgs.gov/mf/1985/1790/</a >. Accessed: October 13, 2020.

Natural Resources Conservation Service. 2006. Soil Survey of Colusa County, California. U.S. Department of Agriculture, in cooperation with Colusa County Resource Conservation District; State of California, Department of Conservation; Regents of the University of California; United States Department of Agriculture, Forest Service; and United States Department of the Interior, Bureau of Land Management and Fish and Wildlife Service. Available: https://ia601605.us.archive.org/10/items/usda-colusaCA2006/colusaCA2006.pdf</a >

Natural Resources Conservation Service. 2020. Soil Survey Geographic (SSURGO) Database for Colusa and Glenn Counties, California [Online]. U.S. Department of Agriculture. Available: https://websoilsurvey.sc.egov.usda.gov/App/WebSoilSurvey.aspx</a >. Accessed: October 21, 2020.

National Oceanic and Atmospheric Administration. 2018. What is a seiche? Last revised: June 25, 2018. Available: http://oceanservice.noaa.gov/facts/seiche.html</a >. Accessed: October 24, 2020.

Norris, R. M., and R. W. Webb. 1990. Geology of California (2nd edition). New York, NY: John Wiley & Sons. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch12_Geo_Soils/NorrisandWebb1990CoastRangespgs359to366.pdf</a >

Scott, E., and K. Springer. 2003. CEQA and Fossil Preservation in California. Environmental Monitor. Fall 2003:1–10. AEP 2004 Conference, AEP Spring 2004 CEQA Workshop Series. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch12_Geo_Soils/ScottandSpringer,%202003_CEQA%20and%20Fossil%20Preservation_201411071429032744.pdf</a >

Sites Project Authority. 2022. 2023–2024 Sites Reservoir Test Pits, Fault Studies, and Quarry Studies, Initial Study/ Negative Declaration. December. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch12_Geo_Soils/Sites%20Project%20Authority_2022_2023-2024%20Proposed%20Test%20Pits_Final%20IS.pdf</a >

Sites Project Authority and Bureau of Reclamation. 2022. 2022–2024 Sites Reservoir Geologic, Geophysical, and Geotechnical Investigations, Final Environmental Assessment/Finding of No Significant Impact, Initial Study/ Negative Declaration. July. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch12_Geo_Soils/Sites%20Project%20Authority%20and%20Reclamation_2022_2022-2024%20Geo%20Investigations_Final%20IS.pdf</a >

Soil Survey Staff. 2020. Web Soil Survey. Natural Resources Conservation Service, United States Department of Agriculture. Available: https://websoilsurvey.sc.egov.usda.gov/App/HomePage.htm</a >. Accessed: October 21, 2020.

Society of Vertebrate Paleontology. 2010. Standard Procedures for the Assessment and Mitigation of Adverse Impacts to Paleontological Resources. Last revised: unknown. Available: http://vertpaleo.org/The-Society/Governance-Documents/SVP_Impact_Mitigation_Guidelines.aspx</a >. Accessed: October 15, 2020.

William Lettis & Associates. 2002. Seismotectonic Evaluation, Phase II Fault and Seismic Hazards Evaluation. North of Delta Offstream Storage, DWR – Integrated Storage Investigations. Prepared for DWR, Sacramento, CA. October. Walnut Creek, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch12_Geo_Soils/WLA_2002_Phase%20II%20Fault%20and%20Seismic%20Hazards%20Investigation%20Report.pdf</a >

University of California Museum of Paleontology. 2020. UCMP Specimen and Advanced Searches. Available: http://ucmpdb.berkeley.edu/</a >. Accessed: October 13 and 14, 2020.

U.S. Department of Agriculture, 2019. Natural Resources Conservation Service. National Soil Survey Handbook, title 430-VI. Parts 618 and 622. Available: https://directives.sc.egov.usda.gov/</a >. November. Accessed May 5, 2020.

U.S. Geological Survey. 2018. U.S. Quaternary Faults, USGS Geologic Hazards Science Center Golden, CO. Available: https://usgs.maps.arcgis.com/apps/webappviewer/index.html?id=5a6038b3a1684561a9b0aadf88412fcf</a >. Accessed: October 21, 2022.

U.S. Geological Survey. 2020. Seismic Seiches. Last revised: unknown. Available: https://www.usgs.gov/natural-hazards/earthquake-hazards/science/seismic-seiches?qt-science_center_objects=0#qt-science_center_objects</a >. Accessed: October 24, 2020.

U.S. Geological Survey. 1970. Mercury in the Environment. Paper 713. U.S. Government Printing Office, Washington DC. Available: https://pubs.usgs.gov/pp/0713/report.pdf</a >. Accessed: November 5, 2020.

Personal Communications

Forrest, Michael. Project Manager. AECOM, Sites Reservoir Authority Engineering Team. October 28, 2020— email to Nicole Williams, Project Manager, ICF, Sacramento, CA Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch12_Geo_Soils/Forrest_Michael_pers.comm.2020.pdf</a >

Chapter 13

AECOM. 2021. Operations and Maintenance for HR Facilities – Draft [memorandum]. February 26. Prepared by Michael Forrest, P.E., G.E.; Mike Smith, P.E., G.E; Idit Zarchi, P.E.; Howard Michael, P.E.; Syed Kazmi, P.E.; Peter Morris. Prepared for Sites Project Authority. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/_Ch13_Minerals/AECOM_2021_O-and-M-TM_Draft_R2_0226.pdf</a >

California Geological Survey. 2021. CGS Information Warehouse: Mineral Land Classification. Available: https://maps.conservation.ca.gov/cgs/informationwarehouse/mlc/</a >.

Clinkenbeard, J.P., and F.W. Gius. 2018. Aggregate Sustainability in California. California Geological Survey Map Sheet 52. Report and Map. Sacramento, CA. Available: https://www.conservation.ca.gov/cgs/minerals/mineral-land-classification-smara</a >.

Colusa County. 2012. Colusa County General Plan. Adopted July 31, 2012. Prepared by De Novo Planning Group for County of Colusa. Available: https://www.countyofcolusa.org/137/General-Plan</a >.

County of Glenn. 1993. Policy Plan, Glenn County General Plan, Volume 1. Glenn County, California. Prepared by Quad Consultants in association with Brown-Buntin Associates, Inc. Adopted June 15, 1993. Available: https://www.countyofglenn.net/sites/default/files/images/1%20Policy%20Plan%20Glenn%20County%20General%20Plan%20Vol.%20I%20Reduced%20Size.pdf</a >

County of Glenn. 2020. Glenn County General Plan Update: Existing Conditions Report 2020. Prepared by De Novo Planning Group for County of Glenn. Available: https://glenncounty.generalplan.org/s/GlennCounty-ECR-Final-Feb2020.pdf</a >.

County of Yolo. 2009. 2030 Countywide General Plan. Land Use and Community Character Element. Adopted November 2009. Available: https://www.yolocounty.org/home/showpublisheddocument/68781/637516723220130000</a >

Executive Office of the President. 2017. A federal strategy to ensure secure and reliable supplies of critical minerals. Federal Register, v. 82, No. 246, p. 60835-60837. Available: https://federalregister.gov/documents/2017/12/26/2017-27899/a-federal-strategy-to-ensure-secure-and-reliable-supplies-of-critical-minerals</a >.

Executive Office of the President. 2020. Addressing the Threat to Domestic Supply Chain from Reliance on Critical Minerals from Foreign Adversaries and Supporting the Domestic Mining and Processing Industries. Federal Register, v. 85, No. 193, p. 62539-62544. Available: https://www.federalregister.gov/documents/2020/10/05/2020-22064/addressing-the-threat-to-the-domestic-supply-chain-from-reliance-on-critical-minerals-from-foreign</a >.

Geologic Energy Management Division. 2021. Well Finder. Available: https://maps.conservation.ca.gov/doggr/wellfinder/#openModal/-121.83103/38.87058/12</a >.

ICF. 2020. Technical Memorandum to File: Sites Reservoir Minerals Information. Sacramento, CA. Prepared by ICF. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/_Ch13_Minerals/ICF_2020_Tech%20Memo%20Minerals.pdf</a >

O’Neal, M.D., and F.W. Gius. 2018. Mineral land classification: concrete aggregate in the greater Sacramento area production-consumption region. California Geological Survey Special Report 245, Sacramento, CA. 55p. Available: https://www.conservation.ca.gov/cgs/minerals/mineral-land-classification-smara</a >.

Schenk, C.J., T.J. Mercier, M.E. Tennyson, C.A. Woodall, K.R. Marra, H.M. Leathers-Miller, and P.A. Le. 2020. Assessment of undiscovered gas resources of the Sacramento Basin Province in California, 2019: U.S. Geological Survey Fact Sheet 2020–3036, 4 p. Available: https://doi.org/10.3133/fs20203036</a >. First posted September 10, 2020.

Secretary of the Interior. 2017 Secretarial Order No. 3359. Critical Mineral Independence and Security. Available: https://www.doi.gov/sites/doi.gov/files/uploads/so_criticalminerals.pdf</a >.

Secretary of the Interior. 2018. Final list of critical minerals 2018. Federal Register 83, no 97:23295-23296. Available: https://www.govinfo.gov/content/pkg/FR-2018-05-18/pdf/2018-10667.pdf</a >.

Shumway, D.O. 1997. Mineral land classification of concrete-grade aggregate resources in Glenn County, California. California Division of Mines and Geology Open-file Report 97-02, Sacramento, CA. 52p. Copyright protected. See introduction for more information

Sterling, R. 2018. What is next for the “mature” Sacramento Basin? The West Side Story, A brief look into the Lower Cretaceous and Upper Jurassic Rock. American Association Petroleum Geologists, Search and Discovery Article No. 11091, 51p. Available: http://www.searchanddiscovery.com/pdfz/documents/2018/11091sterling/ndx_sterling.pdf.html?q=%252BauthorStrip%253Asterling+-isMeetingAbstract%253Amtgabsyes</a >.

Tehama County. 2009. Tehama County General Plan Update 2009 – 2029. Prepared by PMC, Chico, CA. Available: https://co.tehama.ca.us/images/stories/planning/2009-2029%20Tehama%20County%20General%20Plan%20r1.pdf</a >.

Chapter 14

Baldwin, B, D. H. Goldman, D. J. Keil, R. Preston, T. Rosatti, and D. H. Wilken, eds. 2012. The Jepson Manual: Vascular Plants of California. University of California Press, Berkeley. Copyright protected. See introduction for more information. https://sitesreservoirproject.riptideweb.com/references/REF17/_Ch13_%20BotRes/Bald_2012_Jeps.pdf?csf=1&web=1&e=3oSuYv</a >

California Department of Fish and Game (CDFG) (now known as California Department of Fish and Wildlife [CDFW]). 2009. Protocols for Surveying and Evaluating Impacts to Special Status Native Plant Populations and Natural Communities. California Natural Resources Agency, Sacramento, CA. November 24. https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=18959</a >.

California Department of Fish and Game (CDFG) (now known as California Department of Fish and Wildlife [CDFW]). California Interagency Wildlife Task Group. 2008. CWHR version 8.2 personal computer program. Sacramento, CA.

California Department of Fish and Game (CDFG) (now known as California Department of Fish and Wildlife [CDFW]). 2007. WHR-MCV-CALVEG Crosswalk, Version 1, 2007. Unpublished. Available upon request from CDFW Vegetation Classification and Mapping Program.

California Department of Fish and Game (CDFG) (now known as California Department of Fish and Wildlife [CDFW]). 2000. Guidelines for Assessing the Effects of Proposed Projects on Rare, Threatened, and Endangered Plants and Natural Communities. Available: https://www.slocounty.ca.gov/Departments/Planning-Building/Forms-Documents/Environmental-Forms-and-Documents/Information-Resources-for-Environmental-Consultant/Biological/Botanical-Survey-Guidelines.pdf</a >.

California Department of Fish and Game (CDFG) (now known as California Department of Fish and Wildlife [CDFW]). 1984. Guidelines for Assessing the Effects of Developments on Rare and Endangered Plants and Plant Communities. California Natural Resources Agency, Sacramento, CA.

California Department of Fish and Wildlife (CDFW). California Natural Diversity Database (CNDDB). 2017. Data from RareFind 4 retrieved in March 2017.

California Department of Food and Agriculture (CDFA). 2017. California Noxious Weeds. https://www.cdfa.ca.gov/plant/IPC/encycloweedia/weedinfo/winfo_table-sciname.html</a >.

California Department of Food and Agriculture (CDFA). 2010. Pest Rating Proposals and Final Ratings: Weeds. http://blogs.cdfa.ca.gov/Section3162/</a >.

California Department of Water Resources (DWR). 2007. Draft Environmental Impact Report, Oroville Facilities Relicensing – FERC Project No. 2100. Section 4.5.2, Botanical Resources. pp. 92-96. Prepared by Gail Kuenster, Northern District, Red Bluff, CA. Available: https://cadwr.app.box.com/s/hy6iccr92gcxdyotaqfgg3r3zd66fe9b/folder/164821058644

California Department of Water Resources (DWR). 2005. NODOS Botanical Resources Report. Prepared by Barbara Castro, Northern District, Red Bluff, California. References 2000 Progress Report prepared for 1998-1999 surveys by Jenny Marr, Northern District, Red Bluff, CA. https://sitesreservoirproject.riptideweb.com/references/REF17/_Ch13_%20BotRes/DWR_2007_Bot.pdf?csf=1&web=1&e=wmotXi</a >

California Department of Water Resources (DWR). 2004. Land and Water Use Program. Most recent complete, correct, and attributed GIS shapefile for land use in Colusa County as of 2009. Northern Region Office files, Red Bluff, CA.

California Invasive Plant Council (Cal-IPC). 2017. California Invasive Plant Inventory. California Invasive Plant Council: Berkeley, CA. http://cal-. ipc.org/paf/.

California Invasive Plant Council (Cal-IPC). 2010. California Invasive Plant Inventory. 2010 Update of Cal-IPC Publication 2006-02. California Invasive Plant Council: Berkeley, CA.

California Native Plant Society (CNPS). 2017. Inventory of Rare and Endangered Plants. California Native Plant Society. Sacramento, CA. http://www.cnps.org/inventory</a >.

California Native Plant Society (CNPS). 2011. CNDDB Element Ranking. http://www.rareplants.cnps.org/glossary.html#staterank</a >.

California Native Plant Society (CNPS). 1994. “Guidelines for assessing effects of proposed developments on rare plants and plant communities.” Inventory of Rare and Endangered Vascular Plants of California. Sacramento, CA. p. 29.

Center for Invasive Species Management. 2011. Invasive Species Definition Clarification and Guidance White Paper. National Invasive Species Council (NISC). https://www.invasivespeciesinfo.gov/docs/council/isacdef.pdf</a >. Montana State University, Bozeman, Montana. Available: https://www.doi.gov/sites/doi.gov/files/uploads/isac_definitions_white_paper_rev.pdf</a >.

Colusa, Glenn, and Tehama Counties Weed Management Area (CGTWMA). 2002. Pamphlet: 2002 ‘Dirty Dozen’ Noxious Weeds List.

Environmental Systems Research Institute, Inc. (ESRI). 2000. ArcView GIS v. 3.2. Redlands, CA.

Environmental Systems Research Institute, Inc. (ESRI). 1998. ArcView GIS v. 3.2. Redlands, CA.

Mayer, K., and W. Laudenslayer, Jr., eds. 1988. “Fresh Emergent Wetland.” A Guide to Wildlife Habitats in California. California Department of Fish and Game. pp. 124-125. Available: https://www.bing.com/ck/a?!&&p=d37133236e20b6f6JmltdHM9MTY5MTAyMDgwMCZpZ3VpZD0wZWI3NzY0Zi05NWI4LTYwZjYtMjUyMS02NTdkOTRkNzYxNTImaW5zaWQ9NTIzMA&ptn=3&hsh=3&fclid=0eb7764f-95b8-60f6-2521-657d94d76152&psq=1998+Fresh+Emergent+Wetland&u=a1aHR0cHM6Ly9ucm0uZGZnLmNhLmdvdi9GaWxlSGFuZGxlci5hc2h4P0RvY3VtZW50SUQ9NjczOTA&ntb=1</a >.

Mahoney, J. M. and S. B. Rood. 1998. “Streamflow requirements for cottonwood seedling recruitment – an integrative model.” Society of Wetland Scientists. Wetlands. Vol. 18, No. 4, pp. 634-645. Available: https://www.researchgate.net/publication/201999206_Streamflow_Requirements_for_Cottonwood_Seedling_Recruitment_-_An_Integrative_Model</a >.

Nelson, J. R. 1987. “Rare plant surveys: techniques for impact assessment.” Conservation and Management of Rare and Endangered Plants of California. California Native Plant Society. Sacramento, CA. pp. 159-166. Copyright protected. See introduction for more information.

Oswald, V. H. 2002. “Selected plants of Northern California and adjacent Nevada.” Herbarium. Publication no. 11. California State University, Chico. Copyright protected. See introduction for more information. https://sitesreservoirproject.riptideweb.com/references/REF17/_Ch13_%20BotRes/Oswald_2002_Herb.pdf?csf=1&web=1&e=loVAkN</a >

Ruhl, James, Biologist, Mendocino National Forest, U. S. Forest Service (USFS). 2006. Personal communication regarding Mendocino Noxious Weed Priorities. April 12.

Sacramento River Conservation Area Forum (SRCAF). 2003. “Sacramento river riparian forests.” SRCAF Handbook. Chapter 2. http://www.sacramentoriver.org/forum/index.php?id=handbook</a >.

Sawyer, J., T. Keeler-Wolf, T., and J. Evans. 2009. A Manual of California Vegetation. 2nd Edition. California Native Plant Society Press, Sacramento, CA. Available: https://vegetation.cnps.org/</a >.

University of California (U.C.). 2011. Oak Woodland Conservation in California’s Changing Landscape. Available: https://oaks.cnr.berkeley.edu/wp-content/uploads/2018/08/Oak-Woodland-Conservation.pdf</a >.

University of California (U.C.). 2008. Oak Woodland Impact Decision Matrix: A Guide for Planners to Determine Significant Impacts to Oaks as Required by SB 1334. Available: https://www.buttecounty.net/DocumentCenter/View/2675/Oak-Woodland-Impact-Decision-Matrix-2008-PDF?bidId=</a >.

University of California (U.C.). 2007. Research and Outreach to Prevent Woodland Loss. Available: https://calag.ucanr.edu/archive/?type=pdf&article=ca.v061n01p7</a >.

University of California (U.C.). 2004. Sidalcea keckii Wiggins. Jepson Flora Project: Jepson Interchange for California Floristics. Accessed May 2010. http://ucjeps.berkeley.edu/cgi-bin/get_cpn.pl?44422&expand=1</a >.

U.C. Consortium. 2011. Data provided by the participants of the Consortium of California Herbaria (http://ucjeps.berkeley.edu/consortium/</a >). Accessed March 2011. http://ucjeps.berkeley.edu/cgi-bin/new_detail.pl?CHSC63437&related=yes</a > for Tuctoria greenei, and at http://ucjeps.berkeley.edu/cgi-bin/new_detail.pl?CHSC79771</a > for Sidalcea keckii.

U.S. Department of Agriculture (USDA). 2011. Noxious Weed Regulations. 7 CFR Ch. III, Part 360. 1-1-11 Edition. Animal and Plant Health Inspection Service.

U.S. Department of Agriculture (USDA). 2008. Species Fact Sheet for Didymodon norrissii. Available: https://studylib.net/doc/7886148/didymodon-norrisii</a >.

U.S. Fish and Wildlife Service (USFWS). 2008. Biological Opinion for the Long-term Central Valley Project Operations Criteria and Plan. USFWS, California Nevada Region, Sacramento, California. December. 410 pp. https://sitesreservoirproject.riptideweb.com/references/REF17/_Ch13_%20BotRes/USFWS_2008_BioOp.pdf?csf=1&web=1&e=8j8AMR</a >

U.S. Fish and Wildlife Service (USFWS). 2006. Federal Endangered and Threatened Species that Occur in or May be Affected by Projects in Colusa, Glenn, and Tehama Counties. Online query document number 060530044323. Accessed May 5, 2006. https://ecos.fws.gov/ipac/</a >.

U.S. Fish and Wildlife Service (USFWS). 2002. Plant species accounts. [web application]. Species account for Hoover’s spurge. USFWS, Sacramento, CA. Available: https://www.fws.gov/species/hoovers-spurge-chamaesyce-hooveri</a >.

U.S. Fish and Wildlife Service (USFWS). 1996. Guidelines for conducting and reporting botanical inventories for federally listed, and candidate plants. USDI USFWS. Sacramento, CA. https://sitesreservoirproject.riptideweb.com/references/REF17/_Ch13_%20BotRes/USFWS_1996_Botan.pdf?csf=1&web=1&e=uGbSjJ

Chapter 15

California Department of Conservation. 2016a. Colusa County 1998–2016 Land Use Summary. Farmland Mapping and Monitoring Program. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch15_Ag_Forestry/California%20Department%20of%20Conservation_2016_Colusa%20County%201998-2016%20Land%20Use%20Summary.pdf</a >

California Department of Conservation. 2016b. Yolo County 1984–2016 Land Use Summary. Farmland Mapping and Monitoring Program. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch15_Ag_Forestry/California%20Department%20of%20Conservation_2016_Yolo%20County%201984-2016%20Land%20Use%20Summary.pdf</a >

California Department of Conservation. 2016c. Important Farmland: Colusa County and Yolo County. Available: https://gis.data.ca.gov/datasets/cadoc::california-important-farmland-most-recent</a >.

California Department of Conservation. 2018a. Glenn County 1984–2018 Land Use Summary. Farmland Mapping and Monitoring Program. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch15_Ag_Forestry/California%20Department%20of%20Conservation_2018_Glenn%20County%201984-2018%20Land%20Use%20Summary.pdf</a >

California Department of Conservation. 2018b. Important Farmland: Glenn County. Available: https://gis.data.ca.gov/datasets/cadoc::california-important-farmland-most-recent</a >.

California Department of Conservation. 2021a. California Important Farmland Finder. Available: https://maps.conservation.ca.gov/DLRP/CIFF/</a >.

California Department of Conservation. 2021b. Farmland Security Zones. Available: https://www.conservation.ca.gov/dlrp/wa/Pages/Farmland-Security-Zones.aspx</a >. Accessed

California Department of Food and Agriculture. 2009. California Agricultural Vision. Agricultural Land Loss & Conservation. Available: https://www.cdfa.ca.gov/agvision/docs/Agricultural_Loss_and_Conservation.pdf</a >.

California Department of Water Resources. 2013. Fine-Scale Riparian Vegetation Mapping of the Central Valley Flood Protection Plan Area. October 25, 2013. Final Report. Prepared by the California Department of Fish and Wildlife Vegetation Classification and Mapping Program and Geographical Information Center, California State University, Chico. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=74420&inline</a >.

California Rice Commission. 2021. How Rice Grows. Available: https://calrice.org/industry/how-rice-grows/</a >.

Colusa County. 2019. Colusa County Crop Report 2019. Department of Agriculture. Available: https://www.countyofcolusa.org/DocumentCenter/View/12901/2019-Crop-Report?bidId=</a >.

Colusa County. 2020a. County Data for Agricultural Zoning and Parcel Boundaries. Department of Public Works. Available: https://www.countyofcolusa.org/713/GIS-Download-Library</a >.

Colusa County. 2020b. County Data for Williamson Act and FSZ Contracts. County Assessor’s Office. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch15_Ag_Forestry/Colusa%20County_2020b_2020%20Secured%20Tax%20Roll%20with%20Ownerships.xlsx</a >

Ecology Center. 2015. Barriers to Entry: Challenges and Resources for Beginning Farmers. Available: https://ecologycenter.org/blog/barriers-to-entry-challenges-and-resources-for-beginning-farmers/</a >.

Glenn County. 2016a. 2016 Annual Crop & Livestock Report. Glenn County Agricultural Commissioner’s Office. Available: https://www.countyofglenn.net/sites/default/files/Ag_Commissioner/Glenn%20County%202016%20Crop%20Report.pdf</a >.

Glenn County. 2016b. AP Agricultural Preserve Zone. Available: http://www.countyofglenn.net/printpdf/4455</a >.

Glenn County. 2020a. County Data for Timberland Production Zones. County Assessor’s Office.

Glenn County. 2020b. County Data for Agricultural Zoning. Planning & Community Development Services.

Glenn County. 2020c. County Data for Williamson Act and FSZ Contracts. County Assessor’s Office.

Glenn County. 2020d. County Data for Parcel Boundaries. County Assessor’s Office.

Gray, A. B., and Pasternack, G. B. 2016. Colusa Basin Drainage Area Fluvial Sediments: Dynamics, Environmental Impacts and Recommendations for Future Monitoring of The Colusa Basin Suspended Sediment Project. SWAMP-MR-RB5-2016-0002. Prepared for Central Valley Regional Water Quality Control Board, Sacramento, CA. Available: https://www.waterboards.ca.gov/water_issues/programs/swamp/docs/reglrpts/r5_cbds_reg_mar2016.pdf</a >.

Natural Resources Conservation Service. 2010. Important Farmlands Definitions and Criteria as Applied in California. U.S. Department of Agriculture. California Soils Technical Note CA-20. April 23, 2007, revised May 6, 2010. Available: https://efotg.sc.egov.usda.gov/references/public/CA/TN_Soils_CA20revised.pdf</a >.

Natural Resources Conservation Service. 2020. Web Soil Survey. Soil Survey Staff, Natural Resources Conservation Service, United States Department of Agriculture. Available: http://websoilsurvey.sc.egov.usda.gov/</a >.

Sharifi, H., R.J. Hijmans, J.E. Hill, and B.A. Linquist. 2018. Water and Air Temperature Impacts on Rice (Oryza sativa) Phenology. Paddy and Water Environment 16:467–476. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch15_Ag_Forestry/Sharifi_etal_2018_WaterAndAirTemperature.pdf</a >

Sites Program Management Team. 2020. Colusa Basin Drain Hydraulic Modeling Final Technical Memorandum. August 28. Prepared by Chakri Malakpet, Jacobs.

Sommer, T., B. Harrell, M. Nobriga, R. Brown, P. Moyle, W. Kimmerer, and L. Schemel. 2001. California’s Yolo Bypass: Evidence that Flood Control Can Be Compatible with Fisheries, Wetlands, Wildlife, and Agriculture. Fisheries 26(8). Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch15_Ag_Forestry/Sommer_etal_2001_YoloBypass.pdf</a >

Tanner, K.C., L. Windham-Myers, J.A. Fleck, K.W. Tate, S.A. McCord, and B.A. Linquist. 2017. The Contribution of Rice Agriculture to Methylmercury in Surface Waters: A Review of Data from the Sacramento Valley, California. Journal of Environmental Quality 46:133–142. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch15_Ag_Forestry/Tanner%20et%20al%20MeHg%202017%20Sac%20Valley%20-%20JEQ.pdf</a >

USA Rice. 2020. Think Rice: How Rice Grows. Available: https://www.usarice.com/thinkrice/discover-us-rice/how-rice-grows</a >.

U.S. Department of Agriculture. 2017. 2017 Census of Agriculture – County Data. California. National Agricultural Statistics Service. Available: https://www.nass.usda.gov/Publications/AgCensus/2017/Full_Report/Volume_1,_Chapter_2_County_Level/California/st06_2_0001_0001.pdf</a >.

U.S. Department of Agriculture. 2019. CropScape – Cropland Data Layer. National Agricultural Statistics Service. Available: https://nassgeodata.gmu.edu/CropScape/</a >.

U.S. Department of Agriculture. 2021. Farming and Farm Income. Economic Research Service. Available: https://www.ers.usda.gov/data-products/ag-and-food-statistics-charting-the-essentials/farming-and-farm-income/</a >.

U.S. Forest Service. 2020. Administrative Forest Service Boundaries. Available: https://data.fs.usda.gov/geodata/edw/datasets.php</a >.

Yolo County. 2020a. Industry Priorities in Yolo County. Available: https://www.yolocounty.org/government/general-government-departments/county-administrator/county-administrator-divisions/economic-development/industry-priorities-in-yolo-county</a >.

Yolo County. 2020b. Data Downloads: Open Data. Available: https://www.yolocounty.org/government/general-government-departments/innovation-and-technology-services/geographical-information-system/data-downloads</a >.

Yolo County. 2023. Yolo County Williamson Act Eligibility Criteria. Available: https://www.yolocounty.org/home/showpublisheddocument/73540/637885557192200000</a >.

Personal Communications

Davis, Brittany E. Environmental Program Manager. California Department of Water Resources. July 6, 2021—Email to John Spranza, Senior Ecologist/Regulatory Specialist, HDR, Sacramento, CA, and Mallory Bedwell, California Department of Water Resources. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch15_Ag_Forestry/Davis_DWR_PersComm_2021.pdf</a >

Johnson, Tim. President and CEO of California Rice Commission. Meeting on June 8, 2021, including Diana Roberts, Senior Environmental Planner, ICF. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch15_Ag_Forestry/Report_of_Conversation_Johnson.pdf</a >

Kisko, Michael. Environmental Scientist. California Department of Conservation, Farmland Mapping and Monitoring Program, Sacramento, CA. October 2, 2020—Email to Diana Roberts, Senior Environmental Planner, ICF, San Jose, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch15_Ag_Forestry/Kisko_perscomm_20201002_FMMP.pdf</a >

Linquist, Bruce. University of California Extension Service. Meeting on June 8, 2021, including Diana Roberts, Senior Environmental Planner, ICF. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch15_Ag_Forestry/Report_of_Conversation_Linquist.pdf</a >

Chapter 16

Butte County. 2022a. Explore Butte County: Thermalito Afterbay. Available: https://www.explorebuttecounty.com/places/thermalito-afterbay</a >.

Butte County. 2022b. Explore Butte County: Thermalito Forebay. Available: https://www.explorebuttecounty.com/places/thermalito-forebay</a >.

California Department of Fish and Game. 2008. Yolo Basin Wildlife Area Land Management Plan. Prepared by California Department of Fish and Game, Yolo Basin Foundation, and EDAW. June. Available: https://www.yolobasin.org/ybwa-management-plan/</a >.

California Department of Fish and Wildlife. 2020. Sutter Bypass Wildlife Area. Available: https://www.wildlife.ca.gov/Lands/Places-to-Visit/Sutter-Bypass-WA</a >.

https://wildlife.ca.gov/Lands/Places-to-Visit/Sacramento-Bypass-WA</a >.

California Department of Fish and Wildlife. 2021b. Colusa Bypass Wildlife Area. Available: https://wildlife.ca.gov/Lands/Places-to-Visit/Colusa-Bypass-WA</a >.

California Department of Fish and Wildlife. 2022a. Oroville Wildlife Area. Available: https://wildlife.ca.gov/Lands/Places-to-Visit/Oroville-WA</a >.

California Department of Fish and Wildlife. 2022b. Feather River Wildlife Area. Available: https://wildlife.ca.gov/Lands/Places-to-Visit/Feather-River-WA</a >.

California Department of Parks and Recreation. 2022a. Lake Oroville State Recreation Area. Available: https://www.parks.ca.gov/?page_id=462</a >.

California Department of Parks and Recreation. 2022b. Folsom Lake State Recreation Area. Available: https://www.parks.ca.gov/?page_id=500</a >.

California Department of Parks and Recreation. 2022c. Folsom Dam. Available: https://www.parks.ca.gov/?page_id=882</a >.

California Department of Parks and Recreation. 2022d. San Luis Reservoir State Recreation Area. Available: https://www.parks.ca.gov/?page_id=558</a >.

California Department of Water Resources. 2004. Final Recreation Carrying Capacity (R8) Oroville Facilities P2100 Relicensing. https://cadwr.app.box.com/s/hy6iccr92gcxdyotaqfgg3r3zd66fe9b/file/893678160219</a >

National Wild and Scenic Rivers System. 2020. American River, Klamath River, and Trinity River Information. Available: http://www.rivers.gov/rivers/</a >.

Recreation.gov. 2022. Lake Natoma. Available: https://www.recreation.gov/camping/gateways/2280</a >.

Rischbieter, D. 2001. Comparative Inventory of Recreation Facilities at California’s Largest Reservoirs, 2000. Department of Water Resources. Environmental Services Office. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch16_Recreation/Rischbieter_2001_Inventory%20of%20Recreation%20Facilities%20CA%20Reser_CH21045_700A.pdf</a >

Sites Project Authority and Bureau of Reclamation. 2017. Draft Environmental Impact Report/ Environmental Impact Statement, Chapter 29 Public Services and Utilities. Draft. Prepared by Sites Project Authority and the U.S. Department of the Interior, Bureau of Reclamation, Mid-Pacific Region. Volume 1. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch16_Recreation/Authority%202017_29-Pub_Svc_Util_SitesDraftEIR-EIS_August2017.pdf</a >

Stienstra, T. 2008. California Recreational Lakes and Rivers. 4th Edition. Moon Travel. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch16_Recreation/Stienstra2008CaliforniaRecLakesRivers.pdf</a >

U.S. Department of Agriculture. 2014. Management Guide Shasta and Trinity Units Whiskeytown-Shasta-Trinity National Recreation Area. Version 2.12.2014. Available: https://www.fs.usda.gov/Internet/FSE_DOCUMENTS/stelprd3790610.pdf</a >.

U.S. Fish and Wildlife Service. 2020. National Wildlife Refuge System. Available: https://www.fws.gov/refuges/</a >.

Chapter 17

Sites Project Authority. 2020. Final Feasibility Level Basis of Design Report – HC Conveyance Facilities, Sites Reservoir Project. November 9, 2020.Sites Project Authority. 2020. Final Feasibility Level Basis of Design Report – HC Conveyance Facilities, Sites Reservoir Project. November 9, 2020.

California Energy Commission. 2019. 2018 Total System Electric Generation. Last revised: June 24, 2019. https://www.energy.ca.gov/data-reports/energy-almanac/california-electricity-data/2019-total-system-electric-generation/2018</a >.

California Energy Commission. 2020a. 2019 Total System Electric Generation. Last revised: 2020. https://www.energy.ca.gov/data-reports/energy-almanac/california-electricity-data/2019-total-system-electric-generation</a >.

California Energy Commission. 2020b. Hydroelectric Power. Last revised: 2020. https://www.energy.ca.gov/data-reports/california-power-generation-and-power-sources/hydroelectric-power</a >.

California Energy Commission. 2020c. CEC-1304 Power Plant Owners Report as of April 29, 2020. https://data.ca.gov/dataset/qfer-cec-1304-power-plant-owner-reporting-database</a >.

California Energy Commission. 2020d. Electricity Consumption by County. http://www.ecdms.energy.ca.gov/elecbycounty.aspx</a >.

California Energy Commission. 2020e. Electricity Consumption by County. http://www.ecdms.energy.ca.gov/elecbycounty.aspx</a >.

California Energy Commission. 2020f. 2019 California Annual Retail Fuel Outlet Report Results (CEC-A15) Energy Assessments Division 09-22-20. California Energy Commission, Supply Analysis Office. September 22, 2020. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch17_Energy/CEC_2020_2019%20California%20Annual%20Retail%20Fuel%20Outlet%20Report%20Results%20(CEC%E2%80%90A15).pdf</a >

California Independent System Operator. 2020. CAISO 2020 Summer Loads and Resources Assessment. May 15, 2020. https://www.caiso.com/Documents/2020SummerLoadsandResourcesAssessment.pdf</a >. Page 32.

County of Glenn. 1993a. Glenn County General Plan Volume II. Natural Resources issue Paper. Prepared for Glenn County Board of Supervisors. Prepared by QUAD Consultants, Brow-Buntin Associates, Inc., Dowling Associates. 1993. https://www.countyofglenn.net/sites/default/files/images/2%20Issue%20Papers%20Glenn%20County%20General%20Plan%20Vol.%20II%20Reduced%20Size.pdf</a >.

County of Glenn. 1993b. Glenn County General Plan, Energy Element. Prepared by Crawford Multari & Starr, 1993. https://www.countyofglenn.net/sites/default/files/Planning/EnergyElement.pdf</a >.

County of Glenn. 2023. Glenn County General Plan Update. https://glenncounty.generalplan.org/</a >.

Holt. 2010. Tier 4 Emissions Regulations. Holt Caterpillar. https://www.holtcat.com/Portals/0/Tier%204%20Emissions%20Info%20Page.pdf</a >.

National Oceanic and Atmospheric Administration. 2021. Current U.S. Drought Monitor Conditions for California. https://www.drought.gov/states/california</a >.

Power Engineering. 2011. Tier 4 Regulations Affect More than Engines. June 1, 2011. https://www.power-eng.com/emissions/air-pollution-control-equipment-services/tier-4-regulations-affect-more-than-engines/#gref</a >.

Sites Project Authority. 2020. Final Feasibility Level Basis of Design Report – HC Conveyance Facilities, Sites Reservoir Project. November 9, 2020.

Personal Communications

Garcia, Cary. California Energy Commission, Sacramento, CA. April 12, 2021—Email to Robert Lanza, Chemical Engineer Principal, ICF, Takoma Park, MD. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch17_Energy/Garcia%20pers.%20comm.%20Memo%20Style%20Garcia%202021.pdf

Chapter 18

California Department of Transportation. 2021. California Manual on Uniform Traffic Control Devices. March 2021.

California Department of Water Resources. 2007. Management of the California State Water Project. Bulletin 132‑06. Chapter 13, Recreation. December.

California Department of Water Resources. 2008. Management of the California State Water Project. Bulletin 132‑07. Chapter 13, Recreation. December.

California Department of Water Resources. 2012. Management of the California State Water Project. Bulletin 132‑08. Chapter 13, Recreation. June.

Colusa County Local Transportation Commission. 2018. 2018 Colusa County Regional Transportation Plan Update. April 2019. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch18_Nav_Trans_Traffic/Colusa%20County%20Local%20Transportation%20Commission%202018_Adopted%202018%20Colusa%20County%20RTP.pdf</a >

County of Colusa. 2012. Colusa County General Plan: Circulation Element. Adopted July 2012. Prepared by De Novo Planning Group. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch18_Nav_Trans_Traffic/Colusa%20County%202012_Circulation%20Element_Colusa_Final_201304051131077437.pdf</a >

County of Glenn. 2020a. 2020 Glenn County Regional Transportation Plan. May 2020. Prepared by Green Dot Transportation Solutions. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch18_Nav_Trans_Traffic/County%20of%20Glenn%202020a_Final+Glenn+RTP+2020.pdf</a >

County of Glenn. 2020b. Glenn County General Plan Update: Existing Conditions Report. Final. Prepared by De Novo Planning Group. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch18_Nav_Trans_Traffic/County%20of%20Glenn%202020b_General__Plan_Update_Existing_Conditions_Report.pdf</a >

County of Tehama. 2007. Tehama County General Plan Update 2005–2025. Draft 2007. Prepared by PMC. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch18_Nav_Trans_Traffic/Tehama%20County%202007_Tehama_GeneralPlan_p266301ccp2_721.pdf</a >

Dean’s AnglerNet.com. 2011. Fishing Lakes Information. Available: https://sitesproject.org/wp-content/uploads/2023/11/Deans-AnglerNet.com-2011_CH21027_700A_2011_Dean_Fish.pdf</a >. Accessed: February 18, 2021. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch18_Nav_Trans_Traffic/Dean%E2%80%99s%20AnglerNet.com%202011_CH21027_700A_2011_Dean_Fish.pdf</a >

Dirksen, D., and J. Dirksen. 2003. Recreation Lakes of California. 14th Edition. Recreation Sales Publishing. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch18_Nav_Trans_Traffic/Dirksen%20and%20Dirksen%202003_CH21028_700A_2003_Dirk_Rec.pdf</a >

Federal Highway Administration. 2017. Highway Functional Classification Concepts, Criteria, and Procedures. Updated June 2017. U.S. Department of Transportation. Federal Highway Administration, Office of Planning, Environment, and Reality. Available: https://www.fhwa.dot.gov/planning/processes/statewide/related/highway_functional_classifications/section03.cfm</a >.

FishersNet.com. 2002. Recreation and Fishing Information. Available: http://www.fishersnet.com/fishmap.html</a >.

Fishsniffer.com. 2011. Fishing Map Index. Available: http://fishsniffer.com/index.php/maps/</a >.

Governor’s Office of Planning and Research. 2018. Technical Advisory on Evaluating Transportation Impacts in CEQA. April 2018. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch18_Nav_Trans_Traffic/Governors%20OPR%202018%20Tech%20Advisory%20Transportation.pdf</a >

Guthrie, R., P. Jukusky, and D. A. Penland. 1995. Red Bluff Diversion Dam Area Recreational Use Study. Revised 1996. California State University, Chico. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch18_Nav_Trans_Traffic/Guthrie%20et%20al.%201995_CH21035_700A_1995_Guth_Red.pdf</a >

Jacobs. 2021. Sites Reservoir Recreational Trips Methodology and VMT Summaries Technical Memorandum. April 2021. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch18_Nav_Trans_Traffic/Jacobs_2021_Technical%20Memorandum.pdf</a >

Maxwell School District. 2019. Local Control Accountability Plan and Annual Update Template. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch18_Nav_Trans_Traffic/Maxwell%20School%20District%202019_Local%20Accountability%20Plan.pdf</a >

Maxwell Unified School District. 2016. Maxwell Unified School District Policies. Available: http://www.gamutonline.net/district/maxwell/</a >.

National Park Service. 2016. 2015 National Park Visitor Spending Effects. April. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch18_Nav_Trans_Traffic/National%20Park%20Service%202016_CH21040_700A-DR-NPS-RR039_2016-NPS-Visit.pdf</a >

Rischbieter, D., and D. Elkins. 2000. Sites Reservoir Alternative North-of-Delta Offstream Storage Investigation. Appendix J. Recreation Requirements and Opportunities, Sites Reservoir Alternative. California Department of Water Resources, Division of Planning and Local Assistance, Northern District. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch18_Nav_Trans_Traffic/Rischbieter%202000_CH21046_700A_2000_Risch_Ndelt.pdf</a >

Sites Project Authority. 2017. WSIP Application: Benefit Calculation, Monetization, and Resiliency Tab. August. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch18_Nav_Trans_Traffic/Sites%20Project%20Authority_2017_WSIPTraffic.pdf</a >

Stienstra, T. 2004. Third Edition. California Recreational Lakes and Rivers. Third Edition. Avalon Travel Publishing. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch18_Nav_Trans_Traffic/Stienstra%202004_CH21047_700A_2004_Stein_Aval.pdf</a >

Tehama County Transportation Commission. 2019. 2019 Tehama County Regional Transportation Plan. Amended April 2020. Prepared by Green Dot Transportation Solutions. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch18_Nav_Trans_Traffic/Tehama%20County%20Transportation%20Commission%202019_Tehama_2020-rtp-draft.pdf</a >

Transportation Research Board. 2010. Highway Capacity Manual 2010. December 2010. Transportation Research Board. National Research Council, Washington. D.C. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch18_Nav_Trans_Traffic/Transportation%20Research%20Board%202010_HCM_2010_References.pdf</a >

U.S. Census Bureau. 2020. Topologically Integrated Geographic Encoding and Referencing (TIGER) Applications. December 2020. U.S. Census Bureau. U.S. Department of Commerce, Geography Division. Available: https://tigerweb.geo.census.gov/tigerweb2020/</a >. Accessed: December 2020.

U.S. Forest Service. 2021. Shasta Trinity National Forest. Available: https://www.fs.usda.gov/main/stnf/maps-pubs</a >.

Yolo County Transportation Advisory Committee. 2013. County of Yolo Bicycle Transportation Plan. March 2013. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch18_Nav_Trans_Traffic/Yolo%20County%20Transportation%20Advisory%20Committee%202013_YOLO_BicycleTransportationPlan.pdf</a >

Personal Communications

Unsinn, Alicia. Senior District Ranger, U.S. Army Corps of Engineers. March 24, 2017—Personal communication with Jacqueline Todak, CH2M HILL Engineers, Inc. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch18_Nav_Trans_Traffic/Unsinn%20pers.%20comm._CH21052_700A_2017_Uns_Todak.pdf</a >

Chapter 19

California Department of Transportation. 2020. Transportation and Construction Vibration Guidance Manual. April. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch19_Noise/Caltrans%202020.pdf</a >

County of Glenn. 2008. Willows-Glenn County Airport Master Plan. Adopted August 19. Available: https://www.countyofglenn.net/sites/default/files/Airports/WLWChp5.pdf</a >.

Cowan, J. P. 1994. Handbook of Environmental Acoustics. New York, NY: Van Nostrand Reinhold. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch19_Noise/Cowan%201994%20Handbook%20Acoustics.pdf</a >

Federal Transit Administration. 2018. Transit Noise and Vibration Impact Assessment. FTA Report No. 0123. Available: https://www.transit.dot.gov/sites/fta.dot.gov/files/docs/research-innovation/118131/transit-noise-and-vibration-impact-assessment-manual-fta-report-no-0123_0.pdf</a >.

Google Earth. 2020. Glenn County, California. Lat 39.447882, Lon -122.011904, Eye alt 45 miles. Image Landsat/Copernicus. V 7.3.3.7786. Updated: July 21, 2020. Available: https://earth.google.com/web/</a >.

Hoover, R. M., and R. H. Keith. 2000. Noise Control for Buildings, Manufacturing Plants, Equipment and Products. Houston, TX: Hoover & Keith, Inc.

Teachout, E. and T. Cushman. 2005. Use of a Pile Driver Shroud to Minimize Disturbance to Wildlife. Proceedings of Transportation Research Board Noise and Vibration Conference, Seattle, Washington, July 20, 2005. Available: http://www.adc40.org/presentations/summer2005/26_Teachout_noiseshroud.pdf</a >

Washington Department of Transportation. 2018. Biological Assessment Preparation Advanced Training Manual. Version 1-2018. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch19_Noise/WSDOT%202018.pdf

Chapter 20

California Air Pollution Control Officers Association. n.d. Health Effects.

California Air Resources Board. No Date a. Carbon Monoxide and Health. Available: https://ww2.arb.ca.gov/resources/carbon-monoxide-and-health</a >.

California Air Resources Board. No Date b. Nitrogen Dioxide and Health. Available: https://ww2.arb.ca.gov/resources/nitrogen-dioxide-and-health</a >.

California Air Resources Board. No Date c. Sulfur Dioxide and Health. Available: https://ww2.arb.ca.gov/resources/sulfur-dioxide-and-health</a >.

California Air Resources Board. 2000. Risk Reduction Plan to Reduce Particulate Matter Emissions from Diesel-Fueled Engines and Vehicles. Available: https://ww2.arb.ca.gov/sites/default/files/classic//diesel/documents/rrpfinal.pdf</a >. October.

California Air Resources Board. 2005. Air Quality and Land Use Handbook: A Community Health Perspective. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch20_AQ/California%20Air%20Resources%20Board%202005_Air%20Quality%20and%20Land%20Use%20Handbook1.pdf</a >

California Air Resources Board. 2007. Emission Inventory Criteria and Guidelines for the Air Toxics “Hot Spots” Program. https://ww3.arb.ca.gov/ab2588/final/reg.pdf</a >.

California Air Resources Board. 2014. Appendix J: Recreational Watercraft Emissions Inventory Methodology. November.

California Air Resources Board. 2019. Maps and Tables of Area Designations for State and National Ambient Air Quality Standards. Available: https://ww3.arb.ca.gov/regact/2019/sad19/isorappc.pdf</a >.

California Air Resources Board. 2021a. iADAM Air Quality Data Statistics. Available: https://www.arb.ca.gov/adam/index.html</a >.

California Air Resources Board. 2021b. Revised Draft 2020 Mobile Source Strategy. Available: https://ww2.arb.ca.gov/sites/default/files/2021-04/Revised_Draft_2020_Mobile_Source_Strategy.pdf</a >. April 23.

California Air Resources Board. 2021c. March 2021 Public Workshop for the Development of the California Recreational Marine Vessel Emissions Inventory. Available: https://ww2.arb.ca.gov/our-work/programs/mobile-source-emissions-inventory/msei-meetings-workshops</a >. March 30.

California Department of Conservation. 2000. A General Location Guide for Ultramafic Rocks in California—Areas More Likely to Contain Naturally Occurring Asbestos. August. Division of Mines and Geology. Sacramento, CA. Available: https://ww2.arb.ca.gov/sites/default/files/classic/toxics/asbestos/ofr_2000-019.pdf</a >.

California Department of Public Health. 2020. Valley Fever Cases Reach Record High in California in 2019. Available: https://yubanet.com/california/valley-fever-cases-reach-record-high-in-california-in-2019/</a >.

California Department of Public Health. 2022. Coccidioidomycosis in California Provisional Monthly Report. Available: https://public.staging.cdph.ca.gov/Programs/CID/DCDC/CDPH%20Document%20Library/CocciinCAProvisionalMonthlyReport.pdf</a >.

California Office of Environmental Health Hazard Assessment. 2015. Air Toxics Hot Spots Program Guidance Manual. February. Available: https://oehha.ca.gov/media/downloads/crnr/2015guidancemanual.pdf</a >.

ESRI. 2021. Areas with Potential for Naturally Occurring Asbestos. Available: https://www.arcgis.com/apps/webappviewer/index.html?id=da4b648958844134adc25ff002dbea1c</a >.

Google Earth 2020. Glenn County, California. Lat 39.447882, Lon -122.011904, Eye alt 45 miles. Image Landsat/Copernicus. V 7.3.3.7786. Updated: July 21, 2020. Available: https://earth.google.com/web/</a >.

ICF. 2021. Construction Modeling Output Files. July 2021. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch20_AQ/ICF_ConstructionModelingOutputFiles_July2021.pdf</a >

International Agency for Research on Cancer. 2012. Press Release: Diesel Engine Exhaust Carcinogen. June 12. Available: https://www.iarc.fr/wp-content/uploads/2018/07/pr213_E.pdf</a >.

Jacobs. 2021. Sites Reservoir Recreational Trips Methodology and VMT Summaries. April 5. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch20_AQ/Jacobs%202021.pdf</a >

San Joaquin Valley Air Pollution Control District. 2019. APR 1925 Policy for District Rule 2201 AAQA Modeling. Available: http://www.valleyair.org/policies_per/Policies/APR-1925.pdf</a >.

Sites Project Authority. 2017. Water Storage Investment Program Application. Table 1. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch20_AQ/Sites%20Project%20Authority%202017.pdf</a >

Tehama County Air Pollution Control District. 2015. Air Quality Planning and Permitting Handbook. Available: http://tehcoapcd.net/PDF/CEQA%20Handbook%20Mar%202015%20Final.pdf</a >.

U.S. Coast Guard. 2012. National Recreational Boating Survey. Last revised: April 12, 2021. Available: https://cdn.ymaws.com/aca.site-ym.com/resource/resmgr/SPP-documents/Boating_Survey-USCG_2012.pdf</a >.

U.S. Department of Transportation. 2015. Fact Sheet: Diesel-powered Passenger Cars and Light Trucks. Available: https://www.bts.dot.gov/sites/bts.dot.gov/files/legacy/DieselFactSheet.pdf</a >.

U.S. Environmental Protection Agency. 2016. Health Effects of Ozone in the General Population. Last updated September 12. Available: https://www.epa.gov/ozone-pollution-and-your-patients-health/health-effects-ozone-general-population</a >.

U.S. Environmental Protection Agency. 2018. Guidance on Significant Impact Levels for Ozone and Fine Particulates in the Prevention of Significant Deterioration Permitting Program. Available: https://www.epa.gov/sites/default/files/2018-04/documents/sils_guidance_2018.pdf</a >.

U.S. Environmental Protection Agency. 2021a. Health Effects of Ozone Pollution. Last updated July 30. Available: https://www.epa.gov/ground-level-ozone-pollution/health-effects-ozone-pollution</a >.

U.S. Environmental Protection Agency 2021b. Health and Environmental Effects of Particulate Matter (PM). Last updated May 26. Available: https://www.epa.gov/pm-pollution/health-and-environmental-effects-particulate-matter-pm</a >.

U.S. Environmental Protection Agency 2021c. Learn About Asbestos. Last updated February 23. Available: https://www.epa.gov/asbestos/learn-about-asbestos#effects</a >.

U.S. Environmental Protection Agency. 2021d. Criteria Pollutant Nonattainment Summary Report. Available: https://www3.epa.gov/airquality/greenbook/ancl3.html</a >.

U.S. Environmental Protection Agency. 2021e. AP-42: Compilation of Air Emissions Factors. Last revised: January 20, 2021. Available: https://www.epa.gov/air-emissions-factors-and-quantification/ap-42-compilation-air-emissions-factors</a >.

U.S. Environmental Protection Agency. 2021f. Basic Information about NO2. Last revised: June 7, 2021. Available: https://www.epa.gov/no2-pollution/basic-information-about-no2#Effects</a >.

U.S. Geological Survey. 2000. Operational Guidelines (version 1.0) for Geological Fieldwork in Areas Endemic for Coccidioidomycosis (Valley Fever). Available: https://pubs.usgs.gov/of/2000/0348/pdf/of00-348.pdf</a >.

World Population Review. 2023. Population of Counties in California 2023. Available: https://worldpopulationreview.com/states/california/counties</a >.

Yolo-Solano Air Quality Management District. 2007. Handbook for Assessing and Mitigating Air Quality Impacts. July 11. Available: http://www.ysaqmd.org/wp-content/uploads/Planning/CEQAHandbook2007.pdf</a >.

Personal Communications

Ledbetter, Ian. Environmental Program Manager. Glenn County Air Pollution Control District, Glenn County, CA. October 9, 2020—Phone call to Ian Ledbetter. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch20_AQ/Ledbetter%20pers%20comm.pdf</a >

Ryan, Casey. Air Pollution Standards Officer III. Colusa County Air Pollution Control District, Colusa County, CA. October 14, 2020—Phone call to Casey Ryan. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch20_AQ/Ryan%20pers%20comm.pdf</a >

Chapter 21

AECOM and Ascent. 2011. Yolo County Climate Action Plan: A Strategy for Smart Growth Implementation, Greenhouse Gas Reduction, and Adaptation to Global Climate Change. Last revised: March 15, 2011. Available: https://www.yolocounty.org/home/showpublisheddocument/18005/635289380535200000</a >.

California Air Resources Board. 2014. Appendix J: Recreational Watercraft Emissions Inventory Methodology. November. Available: https://ww2.arb.ca.gov/sites/default/files/barcu/regact/2015/simw2015/simw15appj.pdf</a >.

California Air Resources Board. 2017. Short-Lived Climate Pollutant Reduction Strategy. March. Available: https://ww2.arb.ca.gov/sites/default/files/2020-07/final_SLCP_strategy.pdf</a >.

California Air Resources Board. 2020a. California Greenhouse Gas Inventory for 2000-2018 – by Category as Defined in the 2008 Scoping Plan. Last revised: October 15, 2020. Available: https://ww3.arb.ca.gov/cc/inventory/data/tables/ghg_inventory_scopingplan_sum_2000-18.pdf</a >.

California Air Resources Board. 2020b. California High GWP Gases Inventory for 2000-2018 – by Category as Defined in the 2008 Scoping Plan. Last revised: October 15, 2020. Available: https://ww3.arb.ca.gov/cc/inventory/data/tables/ghg_inventory_scopingplan_2000-18hgwp.pdf</a >.

California Air Resources Board. 2021. Development of Recreational Marine Vessel Emissions Inventory Model. March 30. Available: https://ww2.arb.ca.gov/sites/default/files/2021-03/rmv2022_workshop_presentation_dw_032721_ada.pdf</a >.

California Air Resources Board. No date A. GHG Global Warming Potentials. Available: https://ww2.arb.ca.gov/ghg-gwps</a >.

California Air Resources Board. No date B. GHGs Descriptions & Sources in California. Available: https://ww2.arb.ca.gov/ghg-descriptions-sources</a >.

California Energy Commission. 2019. 2018 Total System Electric Generation. Available: https://www.energy.ca.gov/data-reports/energy-almanac/california-electricity-data/2019-total-system-electric-generation/2018</a >.

California Natural Resources Agency. 2009. Final Statement of Reasons for Regulatory Actions. December. Available: https://resources.ca.gov/CNRALegacyFiles/ceqa/docs/Final_Statement_of_Reasons.pdf</a >.

California Natural Resources Agency. 2018. Final Statement of Reasons for Regulatory Action Amendments to the State CEQA Guidelines. November. Available: https://resources.ca.gov/CNRALegacyFiles/ceqa/docs/2018_CEQA_Final_Statement_of%20Reasons_111218.pdf</a >.

Intergovernmental Panel on Climate Change. 2018a. Global Warming of 1.5°C – An IPCC Special Report on the Impacts of Global Warming of 1.5°C Above Pre-Industrial Levels and Related Global Greenhouse Gas Emission Pathways, in the Context of Strengthening the Global Response to the Threat of Climate Change, Sustainable Development, and Efforts to Eradicate Poverty. Available: https://www.ipcc.ch/site/assets/uploads/sites/2/2018/07/SR15_SPM_version_stand_alone_LR.pdf</a >.

Intergovernmental Panel on Climate Change. 2018b. Emissions Gap Report – 2018. Available: https://www.ipcc.ch/site/assets/uploads/2018/12/UNEP-1.pdf</a >.

Tehama County. No date. Tehama County GHG Inventory and Forecast Summary. Available: https://www.tehcoapcd.net/PDF/Tehama%20County%20GHG%20Inventory.pdf</a >.

U.S. Environmental Protection Agency. 2021a. Inventory of U.S. Greenhouse Gas Emissions and Sinks: 1990-2019. Last revised: April 14, 2021. Available: https://www.epa.gov/sites/production/files/2021-04/documents/us-ghg-inventory-2021-main-text.pdf</a >.

U.S. Environmental Protection Agency. 2021b. AP-42: Compilation of Air Emissions Factors. Last revised: January 20, 2021. Available: https://www.epa.gov/air-emissions-factors-and-quantification/ap-42-compilation-air-emissions-factors</a >.

U.S. Environmental Protection Agency. 2021c. eGRID Data Explorer – Output emission rates for CO2, CH4, and N2O for all fuels at the eGrid subregion level for 2019. Last revised: April 12, 2021. Available: https://www.epa.gov/egrid/data-explorer</a >.

World Bank. 2017. Greenhouse Gases from Reservoirs Caused by Biogeochemical Processes. December. Available: http://documents1.worldbank.org/curated/en/739881515751628436/pdf/Greenhouse-gases-from-reservoirs-caused-by-biogeochemical-processes.pdf</a >.

Chapter 22

Barrett, S. 1908. Ethnogeography of the Pomo and Neighboring Indians. University of California Publications in American Archaeology and Ethnology 6(1):1–322. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch22_Cultural_Res/Barrett_1908_Ethno-Geography_Pomo.pdf</a >

Bridgehunter.com. 2021. Gianella Bridge. Available: https://bridgehunter.com/ca/butte/gianella/</a >. Accessed: June 15, 2021.

Castillo, E. 2018. California Indian History. Native American Heritage Commission. Available: http://nahc.ca.gov/resources/california-indian-history/</a >.

Colusa County. 2021. Maxwell. Electronic Document. Available: https://www.countyofcolusa.org/221/Maxwell</a >.

Durham. 2000. California’s Geographical Names. World Dancer Press, Clovis. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch22_Cultural_Res/Durham_2000_SitesPostOffice.pdf</a >

Francis Heritage Services. 1999. Department of Parks and Recreation 523-series forms for the Glenn-Colusa Irrigation District Main Canal. Document on file at the California Historic Resources Information System Northeast Information Center; Chico, California. Confidential information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch22_Cultural_Res/FrancisHeritage_1999_P11-000605.pdf</a >

Goldschmidt, W. 1978. Nomlaki. In Handbook of North American Indians, Vol. 8, California. W.C. Sturtevant, general editor. Smithsonian Institution, Washington, D.C. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch22_Cultural_Res/Goldschmidt_1978_Nomlaki.pdf</a >

Green, W. 1918. Historical Reminiscences of Colusa County, California. Historic Record Company: Los Angeles, CA. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch22_Cultural_Res/Green_1880_ColusaCounty.pdf</a >

Gregory, T. J. 1913. History of Yolo County, California: With Biographical Sketches of the Leading Men and Women of the County, Who Have Been Identified with Its Growth and Development from the Early Days to the Present. Los Angeles, CA. Historic Record Company. Available: https://tile.loc.gov/storage-services/master/pnp/habshaer/ca/ca1300/ca1372/data/ca1372data.pdf</a >

Historic American Engineering Record. 1985. HAER No. CA-44 Photographs, Written Historical and Descriptive Data. Document on file at the Library of Congress; Washington, D.C.

Horizon. 2019. Cultural Resources Sensitivity Analysis Report, North of Delta Offstream Storage/Sites Reservoir Feasibility Geotechnical Investigation Colusa and Glenn Counties, California. Prepared for the Sites Authority. Confidential.

ICF. 2021. Sites Reservoir Project Cultural Resources Report. Confidential technical report prepared for the Sites Authority. Report on file with the Sites Authority. Confidential.

Johnson, P. 1978. Patwin. In Handbook of North American Indians, Vol. 8, California, edited by R.F. Heizer. Pp.350-360. Smithsonian Institution, Washington. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch22_Cultural_Res/Johnson_1978_Patwin.pdf</a >

Kroeber, A. L. 1925. Handbook of Indians of California. Bureau of American Ethnology, Bulletin 78. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch22_Cultural_Res/Kroeber_1925_.pdf</a >

Kroeber, A. L. 1932. The Patwin and Their Neighbors. University of California Publications in American Archaeology and Ethnology 29:4. University of California Press; Berkeley. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch22_Cultural_Res/Kroeber_1932_Patwin_ucp029-005.pdf</a >

Madley, B. 2016. An American Genocide: The United States and the California Indian Catastrophe. New Haven: Yale University Press. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch22_Cultural_Res/Madley_2016_Genocide.pdf

Magnuson, T.A. 1918. History of the Beet Sugar Industry in California. Annual Publications of the Historical Society of Southern California. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch22_Cultural_Res/Magnuson_1918_SugarBeetsCA.pdf</a >

Merriam, C. H. 1955. Studies of California Indians. UC Press; Berkeley. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch22_Cultural_Res/Merriam_1955_Intro.pdf</a >

Merriam, C. H. 1967. Ethnographic notes on California Indian Tribes (3 parts). Edited by R.F. Heizer. University of California Archaeological Survey Reports 68; University of California; Berkeley. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch22_Cultural_Res/Merriam_1967_Ethnographic%20Notes%20CA%20Indian%20Tribes.pdf</a >

Merriam, C. H. 1977. Ethnogeography and Ethnosynonymic data from Northern California tribes. Archaeological Research Facility Publications 2; UC Berkeley. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch22_Cultural_Res/Merriam_1977_1567_001.pdf</a >

Native American Netroots. 2015. California’s War on Indians, 1850 to 1851. Available: http://nativeamericannetroots.net/diary/1862</a >.

Office of Historic Preservation. 2021a. Site of First Posted Water Notice by Will S. Green. Hamilton City, Glenn County. Available: https://ohp.parks.ca.gov/?page_id=21414</a >.

Office of Historic Preservation. 2021b. Swift’s Stone Corral. Maxwell, Colusa County. Available: https://ohp.parks.ca.gov/?page_id=21419</a >.

Rogers, J. 1891. Colusa County, Its History Traced from a State of Nature Through the Early Period of Settlement and Development to the Present Day. Orland. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch22_Cultural_Res/Rogers_1891_ColusaCounty.pdf</a >

Rosenthal, J., G. White, and M. Sutton. 2010. The Central Valley: A View from the Catbird’s Seat. In California Prehistory: Colonization, Culture, and Complexity, pp. 215-227. Edited by Terry L. Jones and Kathryn A. Klar. Lanham, MD: Altamira Press. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch22_Cultural_Res/RosenthalEtAl_2010_ViewFromTheCatbirdsSeat.pdf</a >

Shipley. 1978. Native Languages of California. In Handbook of North American Indians, Volume 8, California. W.C. Sturtevant, general editor, pp. 80-90. Smithsonian Institution; Washington, D.C. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch22_Cultural_Res/Shipley_1978_NativeLanguages.pdf</a >

Sites Project Authority and Bureau of Reclamation. 2017. Sites Reservoir Project Draft Environmental Report / Draft Environmental Impacts Statement. State Clearinghouse #2001112009.

State Historic Preservation Officer. 2019. “National Historic Preservation Act (NHPA) Section 106 Consultation for the North Delta Offstream Storage/Sites Reservoir Feasibility Geotechnical Investigation Project, Glenn and Colusa Counties, California (19-MRPO-043)”. Letter addressed to Bureau of Reclamation. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch22_Cultural_Res/SHPO_2019_BUR%200826_001.pdf</a >

URS. 2013. North-Of-The-Delta Offstream Storage Project Draft Archaeological Inventory Report. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch22_Cultural_Res/URS_2013_NODOS_ArchaeoInvReport.pdf</a >

Wilkes, C. 1844. Narrative of the United States Exploring Expeditions During the Years 1838, 1838, 1840, 1841,1842. 5 Vols. Philadelphia: Lea and Blanchard. Reprinted 1958 Columbia River to the Sacramento. Bio-books; Oakland, California. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch22_Cultural_Res/Wilkes_1841_Cattle_.pdf</a >

White, G., J. Kraft, and K. Hillman. 2009. Archaeological Overview, Inventory Report, and Research Design, Proposed Sites Reservoir APE, Colusa and Glenn Counties, California. Prepared for the Department of Water Resources; Sacramento, California.

Yolo County. 2013. Second Draft Dunnigan Specific Plan. Electronic Document. Available: https://www.yolocounty.org/home/showdocument?id=22647</a >.

Chapter 23

CCIC Outdoor Adventures. 2015a. Big Game Hunts. Available: http://hunt-fish-game.com/big-game-hunts/</a >.

CCIC Outdoor Adventures. 2015b. Guided Fishing Trips. Available: http://hunt-fish-game.com/sport-fishing-trips/</a >.

CCIC Outdoor Adventures. 2015c. Guided Waterfowl Shoots. Available: http://hunt-fish-game.com/guided-waterfowl-shoots/</a >.

Colusa Indian Community. 2020a. Government. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch23_Tribal_Cultural/Colusa_2020a_Government.pdf</a >

Colusa Indian Community. 2020b. Economic Development. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch23_Tribal_Cultural/Colusa_2020b_EconomicDevelopment.pdf</a >

Colusa Indian Community. 2020c. Farming. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch23_Tribal_Cultural/Colusa_2020c_Farming.pdf</a >

Cortina Band of Wintun Indians. 2010. North of Delta Off-Stream Storage Interim Report. On file with the Bureau of Reclamation, Sacramento, CA. Copyright protected. See introduction for more information.

Eargle, D. H., Jr. 2000. Native California Guide: Weaving the Past and Present. San Francisco, California: Trees Company Press. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch23_Tribal_Cultural/Eargle_2000_NativeCA-Guide.pdf</a >

Goldschmidt, W. 1978. Nomlaki. In California, Vol. 8, Handbook of North American Indians, pgs. 341-349. R. F. Heizer, volume editor; W. C. Sturtevant, general editor. Washington, D.C.: Smithsonian Institution. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch23_Tribal_Cultural/Goldschmidt_1978_Nomlaki.pdf</a >

Knudtson, P. M. 1977. The Wintun Indians of California and their Neighbors. Happy Camp, California: Naturegraph Publishers, Inc. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch23_Tribal_Cultural/Knudtson_1977_Wintu.pdf

National Park Service. 2004. A History of American Indians in California: Historic Sites. Nome Lackee Indian Reservation. History. Available: https://www.nps.gov/parkhistory/online_books/5views/5views1h55.htm</a >.

Paskenta Band of Nomlaki Indians. 2022. Available: https://paskenta-nsn.gov/</a >.

Sites Project Authority and Bureau of Reclamation. 2017. Sites Reservoir Project Draft Environmental Impact Report/Environmental Impact Statement. August. Available: https://sitesproject.org/environmental-review/draft-environmental-impact-report-environmental-impact-statement/</a >.

U.S. Bureau of Indian Affairs. No date. Tribal Leaders Directory. Available: https://www.bia.gov/bia/ois/tribal-leaders-directory/tribes/cachil-dehe</a >.

White, G. G., J. Kraft, and K. Hillman. 2009. Archaeological Overview, Inventory Report, and Research Design, Proposed Sites Reservoir APE, Colusa and Glenn Counties, California. Reports No. 55. August. California State University, Chico. Prepared for Department of Water Resources, Red Bluff, California. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch23_Tribal_Cultural/WhiteEtAl2009_Context.pdf</a >

Yocha Dehe Wintun Nation. No date a. Heritage. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch23_Tribal_Cultural/YochaDehe_n.d.a._Heritage.pdf</a >

Yocha Dehe Wintun Nation. No date b. Farm & Ranch. Available: https://yochadehe.gov/farm-ranch/</a >.

Yocha Dehe Wintun Nation. 2015. Yocha Dehe Tribal Brochure. e-brochure. Available: https://issuu.com/yochadehe/docs/f5_rw-981_tribal_brochure/10</a >.

Chapter 24

Colusa County. 2012. Colusa County 2030 General Plan. Adopted: July 31, 2012. Colusa County, CA. Available: https://www.countyofcolusa.org/137/General-Plan

Federal Highway Administration. 2015. Guidelines for the Visual Impact Assessment of Highway Projects. (FHWA-HEP-15-029.) USDOT (US Department of Transportation). Washington, DC. January 2015. Available: https://www.environment.fhwa.dot.gov/env_topics/other_topics/VIA_Guidelines_for_Highway_Projects.pdf</a >

Glenn County. 1993. Glenn County General Plan, Policy Plan. Adopted. June 15, 1993. Glenn County, CA. Available: https://www.countyofglenn.net/sites/default/files/images/1%20Policy%20Plan%20Glenn%20County%20General%20Plan%20Vol.%20I%20Reduced%20Size.pdf</a >

Litton, R. Burton, Jr. 1968. Forest Landscape Description and Inventories – A Basis for Land Planning and Design. (U.S. Department of Agriculture Forest Service Research Paper PSW-49) Pacific Southwest Forest and Range Experiment Station. Berkeley, CA. Available: https://www.fs.usda.gov/psw/publications/documents/psw_rp049/psw_rp049.pdf</a >.

Chapter 25

AECOM and Engineering Solutions. 2021. Constructability Analysis for the Conveyance Facilities Task Order No. 2, Task HR53 – Draft [memorandum]. February 22. Prepared by Michael Forrest, P.E., G.E.; Dan Hertel. Prepared for Sites Project Authority. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch25_Pop_Housing/AECOM_2021_Constructability%20TM_Draft.pdf</a >

California Department of Housing and Community Development. 2020. Regional Housing Needs Allocation and Housing Elements Website. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch25_Pop_Housing/CalDeptHousingCommunityDevelopment_2020.pdf</a >

California Department of Finance. 2020a. Forecasting. Demographics. Estimates. E-5 Population and Housing Estimates for Cities, Counties, and the State, 2010-2020, with 2010 Census Benchmark. Last revised: May 2020. Available: http://www.dof.ca.gov/Forecasting/Demographics/Estimates/E-5/</a >.

California Department of Finance. 2020b. Projections: P-1 State Population Projections, Total Population by County (1-year increments). Last revised: No date. Available: http://www.dof.ca.gov/Forecasting/Demographics/Projections/</a >.

Colusa County. 2019. County of Colusa Housing Element Update Power Point. February 22. Available at: https://www.countyofcolusa.org/DocumentCenter/View/10758/Final-Stakeholders-mtg-presentation-2-21-19?bidId=</a >.

Colusa County Community Development Department. 2020. Colusa County Housing Element Update, 2020-2028. Board of Supervisors Approved: June 30, 2020. Available: https://www.countyofcolusa.org/DocumentCenter/View/13433/2020-to-2028-Colusa-County-Housing-Element-Update—Approved?bidId=</a >.

Glenn County. 2020. Final Regional Housing Need Determination. Available: https://www.hcd.ca.gov/community-development/housing-element/docs/glenn-county-regional-housing-needs-determination-for-the-sixth-housing-element-update.pdf</a >.

Jacobs, Geosyntec, and Vanderwell. 2021. Constructability Analysis for the Conveyance Facilities Task Order No. 2 – Draft [memorandum]. March 24. Prepared by Jeff Smith, P.E.; Isabell Barrios; Brian Martinez, P.E.; Derek Morly, P.E.; Larry Fishman, P.E. Prepared for Sites Project Authority. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch25_Pop_Housing/Jacobs_2021_Sites%20HC%20Constructability_TM_Draft.pdf</a >

Realtor.com. 2021. Maxwell Housing Search. Available at: https://www.realtor.com/realestateandhomes-search/Maxwell_CA</a >.

Redfin. 2021. Maxwell Housing Search. Available: https://www.redfin.com/city/33715/CA/Maxwell</a >.

United States Census Bureau. 2019. Lodoga CDP, California. Available: https://data.census.gov/cedsci/profile?g=1600000US0642230</a >.

Yolo County. 2018. Yolo County General Plan Annual Progress Report. Available: https://www.yolocounty.org/home/showdocument?id=60315</a >.

Zillow. 2021. Maxwell Housing Search. Available: https://www.zillow.com/homes/for_sale/maxwell-california_rb/</a >.

Chapter 26

AECOM and Engineering Solutions. 2021. Constructability Analysis for the Conveyance Facilities Task Order No. 2, Task HR53 – Draft [memorandum]. February 22. Prepared by Michael Forrest, P.E., G.E.; Dan Hertel. Prepared for Sites Project Authority. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch26_Public_Srvcs/AECOM_2021_Constructability%20TM_Draft.pdf</a >

California Department of Resources Recycling and Recovery. 2020. SWIS Facility/ Site Search. Available: https://www2.calrecycle.ca.gov/SolidWaste/Site/Search</a >.

California Public Utilities Commission. 2020. Natural Gas and California. Available: https://www.cpuc.ca.gov/natural_gas/</a >.

Central Valley Regional Water Quality Control Board. 2018. Central Valley Water Board Meeting. Item 25: Uncontested NPDES Permits and Enforcements. April 5/6, 2018 Meeting. Available: https://www.waterboards.ca.gov/centralvalley/board_decisions/tentative_orders/1804/25_uncon_npdes_enf_buff.pdf</a >.

Colusa County. 1989. Colusa County General Plan. Final. Adopted January 13. Available: http://www.countyofcolusageneralplan.org/sites/default/files/backgrounddox/1989%20General%20Plan/7.%20_CommunityServicesElement.pdf</a >.

Colusa County. 2010. Colusa County General Plan Update Background Report. Prepared by De Novo Planning Group. June. Available: http://www.countyofcolusageneralplan.org/sites/default/files/Colusa%20Background%20Report_Complete_no%20figures.pdf</a >.

Colusa LAFCO. 2013a. Arbuckle Public Utility District Municipal Service Review. Resolution 2013-0001. Adopted March 7. Available: https://www.colusalafco.org/uploads/1/1/4/5/11454087/adopted_arbuckle_msr_mar_7_2013.pdf</a >.

Colusa LAFCO. 2013b. City of Williams Municipal Service Review. Resolution 2013-0005. Adopted August 1. Available: https://www.colusalafco.org/uploads/1/1/4/5/11454087/adopted_williams_msr_august_1_2013.pdf</a >.

Colusa LAFCO. 2016. Princeton Waterworks District Municipal Service Review (MSR) and Sphere of Influence (SOI). Draft. August. Available: https://www.colusalafco.org/uploads/1/1/4/5/11454087/princeton_waterworks_dist._8.2016_msr-soi.pdf</a >.

Colusa LAFCO. 2017. Maxwell Public Utility District (MPUD) Municipal Service Review (MSR) Sphere of Influence (SOI). Hearing Draft. September. Available: http://www.colusalafco.org/uploads/1/1/4/5/11454087/hearing_draftmaxwell_pud_msr-soi_9.7.17.pdf</a >.

County of Glenn. 2020. Glenn County Sheriff. Available: https://www.countyofglenn.net/dept/sheriff/welcome</a >.

Ed-Data. 2022. Education Data Partnership. 2021–2022 Data. http://www.ed-data.org/</a >.

Federal Emergency Management Agency. 2010. Debris Estimating Field Guide. Available https://www.fema.gov/sites/default/files/2020-07/fema_329_debris-estimating_field-guide_9-1-2010.pdf</a >.

FireDepartment.net. 2020a. Glenn County, CA Fire Departments.

FireDepartment.net. 2020b. Colusa County, CA Fire Departments.

Glenn County. 2020. Glenn County General Plan Update Existing Conditions Report 2020. Prepared by De Novo Planning Group. Available: https://static1.squarespace.com/static/5c8a73469b7d1510bee16785/t/5e556b56c253f84cdc287783/1582656403698/GlennCounty-ECR-Final-Feb2020.pdf</a >.

Green Building Initiative. 2020. Water Consumption Calculator. Available: https://app.thegbi.org/education/library/</a >.

Inmyarea.com. 2020. Utilities in Williams, CA. Available: https://www.inmyarea.com/utilities?zipcode=95987</a >.

Maxwell Unified School District. 2019. Local Control Accountability Plan and Annual Update Template.

Pacific Gas and Electric Company. 2014a. Gas Service Area Maps. Available: https://www.pge.com/tariffs/assets/pdf/tariffbook/GAS_MAPS_Service_Area_Map.pdf</a >.

Pacific Gas and Electric Company. 2014b. Electrical Service Area Maps. Available: https://www.pge.com/tariffs/assets/pdf/tariffbook/ELEC_MAPS_Service%20Area%20Map.pdf</a >.

Phone Providers. 2020a. Phone Providers by Zip Code. Available: https://www.phoneprovidersguide.com/95943-zipcode-phone-providers.html

Phone Providers. 2020b. Phone Providers by Zip Code. Available: https://www.phoneprovidersguide.com/95932-zipcode-phone-providers.html</a >.

Phone Providers. 2022. Phone Providers by Zip Code. Available: https://www.phoneprovidersguide.com/95937-zipcode-phone-providers.html</a >.

Sites Project Authority and Bureau of Reclamation. 2017. Draft Environmental Impact Report/ Environmental Impact Statement, Chapter 29 Public Services and Utilities. Draft. Prepared by Sites Project Authority and the U.S. Department of the Interior, Bureau of Reclamation, Mid-Pacific Region. Volume 1. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch26_Public_Srvcs/SitesProjectAuthorityandReclamation_2017_Ch29DraftEIREIS.pdf</a >

U.S. Environmental Protection Agency. 1971. Solid Waste Management in Recreational Forest Areas. Report No. SW-16ts. Solid Waste Management Office. Available: https://files.eric.ed.gov/fulltext/ED092348.pdf</a >.

U.S. Environmental Protection Agency. 2002. Onsite Wastewater Treatment Systems Manual. EPA/625/R-00/008. Prepared by U.S. Environmental Protection Agency. February. Available: https://www.epa.gov/sites/production/files/2015-06/documents/2004_07_07_septics_septic_2002_osdm_all.pdf</a >.

U.S. Environmental Protection Agency. 2009. Estimating 2003 Building-Related Construction and Demolition Materials Amounts. Available: https://www.epa.gov/sites/production/files/2017-09/documents/estimating2003buildingrelatedcanddmaterialsamounts.pdf</a >.

U.S. Environmental Protection Agency. 2020. List of Water Systems in Safe Drinking Water Information System (SDWIS) for Colusa County. Accessed: December 8, 2020. https://www3.epa.gov/enviro/facts/sdwis/search.html</a >.

U.S. Forest Service. 2007. Water Use in Forest Service Recreation Areas: Guidelines for Water System Designers. Engineering Tech Tips 0773-2326–MTDC. Available: https://www.fs.usda.gov/t-d/pubs/pdfpubs/pdf07732326/pdf07732326dpi300.pdf</a >.

USACOPS. 2020. The Nations Law Enforcement Site. Available: https://www.usacops.com/ca/glenn.html</a >.

Western Area Power Administration. 2020. Customer Service Map 2020. Available: https://www.wapa.gov/about-wapa/regions/service-map/</a >.

Wirefly. 2020a. Cable TV Providers in Glenn, CA. Available: https://www.wirefly.com/compare-tv-providers/california/glenn</a >.

Wirefly. 2020b. Cable TV Providers in Williams, CA. Available: https://www.wirefly.com/compare-tv-providers/california/williams</a >.

Wirefly. 2022. Cable TV Providers in Dunnigan CA. Available: https://www.wirefly.com/compare-tv-providers/california/dunnigan</a >.

Yolo County. 2009a. County of Yolo 2030 Countywide General Plan, Chapter 5, Public Facilities and Services Element. Available: https://www.yolocounty.org/home/showpublisheddocument/14466/635289380535200000</a >.

Yolo County. 2009b. LSA Associates, Inc. Yolo County 2030 County Wide General Plan EIR Chapter IV. Setting, Impacts And Mitigation Measures Section H . Utilities and Energy. April 2009. Available: https://www.yolocounty.org/home/showpublisheddocument/9177/635289380535200000</a >

Personal Communications

Cohen, Kenny. Maxwell Fire Protection District. December 8, 2020—telephone conversation with Yassaman Sarvian, Associate Environmental Planner, Jacobs, Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch26_Public_Srvcs/PersCommForm_MaxwellFireProtectionDistrict_12082020.pdf</a >

Corbin, Sandy. Fire Chief. Bear Valley/Indian Valley Fire Protection District. December 7, 2020—telephone conversation with Yassaman Sarvian, Associate Environmental Planner, Jacobs, Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch26_Public_Srvcs/PersCommForm_BearValleyIndianValleyFireProtectionDistrict_12072020.pdf</a >

Gilbert, Jeff. Williams Fire Protection Authority. December 7, 2020—telephone conversation with Yassaman Sarvian, Associate Environmental Planner, Jacobs, Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch26_Public_Srvcs/PersCommForm_WilliamsFireProtectionAuthority_12072020.pdf</a >

Peabody, Wayne. Willows City/Rural Fire Department. December 8, 2020—telephone conversation with Yassaman Sarvian, Associate Environmental Planner, Jacobs, Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch26_Public_Srvcs/PersCommForm_WillowsCityRuralFireDepartment_12082020.pdf</a >

Warner Herson, Laurie. Sites Authority Integration CEQA/NEPA Project Manager. April 19, 2021—telephone conversation with Nicole Williams, Senior Environmental Planner, ICF, Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch26_Public_Srvcs/Warner%20Herson,%20Laurie_perscomm_2021.pdf</a >

Wright, Chesnie. Customer Service Specialist. Recology Butte Colusa Counties Recycling Facility and Office. December 7, 2020—telephone conversation with Morgan Angulo, Environmental Planner, Jacobs, Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch26_Public_Srvcs/PersCommForm_ColusaCountySolidWaste_12072020.pdf</a >

Chapter 27

Alpers C., C. Eagles-Smith, C. Foe, S. Klasing, M. Marvin-DiPasquale, D. Slotton, and L. Windham-Myers. 2008. Mercury conceptual model. Sacramento (CA): Sacramento–San Joaquin Delta Regional Ecosystem Restoration Implementation Plan. USGS Staff- Published Research 476. Available: https://digitalcommons.unl.edu/cgi/viewcontent.cgi?article=1485&context=usgsstaffpub</a >.

American Water Works Association and Water Research Foundation. 2016. Managing Cyanotoxins in Drinking Water: A Technical Guidance Manual for Drinking Water Professionals. September. Available: https://www.awwa.org/Portals/0/AWWA/Government/Managing_Cyanotoxins_In_Drinking_Water.pdf?ver=2018-12-13-101836-763</a >.

Berg, M. and M. Sutula. 2015. Factors Affecting Growth of Cyanobacteria with Special Emphasis on the Sacramento-San Joaquin Delta. August. Prepared for: The Central Valley Regional Water Quality Control Board and The California Environmental Protection Agency State Water Resources Control Board. Technical Report 869. August 2015. Available: http://ftp.sccwrp.org/pub/download/DOCUMENTS/TechnicalReports/869_FactorsAffectGrowthOfCyanobacteria-1.pdf</a >.

California Cyanobacteria and Harmful Algal Bloom Subcommittee. 2020. Benthic Algal Mat Signage Design. April 30. Available: https://mywaterquality.ca.gov/habs/resources/docs/benthic_signage_procedure_20200430.pdf</a >.

California Department of Fish and Wildlife. 2016. Colusa Basin Drain and Wallace Weir Fish Trapping and Relocation Efforts November 2013 – June 2014. Report prepared by Kari Gahan, Mike Healey, Chris McKibbin, Hideaki Kubo, and Colin Purdy. CDFW North Central Region. Rancho Cordova. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch27_Public_Health_Env_Haz/CDFW_2016_Colusa%20Basin%20Drain%20and%20Wallace%20Weir.pdf</a >

California Office of Environmental Health Hazard Assessment. 2013. Statewide Health Advisory and Guidelines for Eating Fish from California’s Lakes and Reservoirs without Site-Specific Advice. July. California Environmental Protection Agency. Available: https://oehha.ca.gov/media/downloads/advisories/calakeresadvisory080113.pdf</a >.

California Office of Environmental Health Hazard Assessment. 2022. Recommendations for Acute Notification Levels for Anatoxin-A, Cylindrospermopsin, Microcystins and Saxitoxins. Memorandum from Lauren Zeise, Director. June 15. Available: https://oehha.ca.gov/media/acute_nl_recommendations_memo_061522.pdf</a >.

California Water Quality Monitoring Council. 2021. California Voluntary Guidance for Response to HABs in Recreational Inland Waters. Available: https://mywaterquality.ca.gov/habs/resources/habs_response.html</a >.

Centers for Disease Control and Prevention. 2019. Maps and Statistics; Plague in the United States. Available: https://www.cdc.gov/plague/maps/index.html</a >.

Central Valley Regional Water Quality Control Board. 2010. Amendments to the Water Quality Control Plan for the Sacramento River and San Joaquin River Basins for the Control of Methylmercury and Total Mercury in the Sacramento–San Joaquin Delta Estuary, Staff Report. Rancho Cordova, CA. Available: https://www.waterboards.ca.gov/centralvalley/water_issues/tmdl/central_valley_projects/delta_hg/archived_delta_hg_info/april_2010_hg_tmdl_hearing/apr2010_bpa_staffrpt_final.pdf</a >.

Central Valley Regional Water Quality Control Board. 2018. The Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board, Central Valley Region: The Sacramento River Basin and the San Joaquin River Basin. Fifth Edition. Revised May 2018. Available: https://files.ceqanet.opr.ca.gov/123569-2/attachment/TUjY3moiJo4o-95O1Pj2RGEwn_UQibic3WITZbjtIU-6urN666hsZZOyKvh1DhWnDmvsCpf6isOPOwAH0</a >.

Central Valley Regional Water Quality Control Board. 2019. Nonpoint Source 319(H) Program Cyanobacteria and Harmful Algal Blooms Evaluation Project Harmful Algal Bloom Primer. November. Available: https://www.waterboards.ca.gov/centralvalley/water_issues/nonpoint_source/harmful_algal_blooms/final_hab_primer.pdf</a >.

Chorus, I., and M. Welker (eds.). 2021. Toxic Cyanobacteria in Water. 2nd edition. Boca Raton, FL: CRC Press, on behalf of the World Health Organization. Available: https://www.taylorfrancis.com/books/oa-edit/10.1201/9781003081449/toxic-cyanobacteria-water-ingrid-chorus-martin-welker</a >.

Colusa County. 2012. Colusa County General Plan Safety Element. Available: http://www.countyofcolusageneralplan.org/content/general-plan-adoption/index.html</a >.

Colusa County. n.d. Colusa County Emergency Services. Available: https://www.countyofcolusa.org/174/Emergency-Services</a >.

Diez, S. 2009. Human Health Effects of Methylmercury Exposure. Reviews of Environmental Contamination and Toxicology:111–125. Copyright protected. See introduction for more information.

Extension Toxicology Network. 1993. Bioaccumulation. Toxicology Information Briefs. Updated September 1993. A Pesticide Information Project of Cooperative Extension Offices of Cornell University, Oregon State University, the University of Idaho, and the University of California at Davis and the Institute for Environmental Toxicology, Michigan State University. Available: http://extoxnet.orst.edu/tibs/bioaccum.htm#:~:text=BIOACCUMULATION%3A%20A%20STATE%20OF%20DYNAMIC%20EQUILIBRIUM&text=Excretion%2C%20storage%2C%20and%20metabolism%20decrease,to%20move%20into%20the%20organism</a >.

FIRESafe MARIN. 2020. How Topography Influences Wildfire Risk. FIRESafe MARIN. https://www.firesafemarin.org/topography</a >.

Gagala, I. and J. Mankiewicz-Boczek. 2012. The Natural Degradation of Microcystins (Cyanobacterial Hepatotoxins) in Fresh Water – the Future of Modern Treatment Systems and Water Quality Improvement. Polish Journal of Environmental Studies 21(5): 1125-1139. Available: https://pdfs.semanticscholar.org/58ad/83ba25a5744edd287df710ba3843b92385b1.pdf</a >.

Glenn County. 2019. Operational Area Emergency Operations Plan. Available: https://www.countyofglenn.net/sites/default/files/Sheriff/Glenn%20OA%20EOP-%20Basic%20Plan%202019.pdf</a >.

Glenn County. 2021. Office of Emergency Services. Available: https://www.countyofglenn.net/dept/sheriff/office-emergency-services/welcome</a >.

Graham, J.L., K.A. Loftin, A.C. Ziegler, and M.T. Meyer. 2008. Cyanobacteria in Lakes and Reservoirs: Toxin and Taste-and-Odor Sampling Guidelines. Chapter A7, Section 7.5 of U.S. Geological Survey Techniques of Water-Resources Investigations, Book 7. September. Available: https://pubs.usgs.gov/twri/twri9a7/twri9a7_7.5.pdf</a >.

Grandjean, P. and K.T. Herz. 2011. Brain Development and Methylmercury: Underestimation of Neurotoxicity. Mt Sinai J Med 78(1):107–118. Available: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3096460/

Green, J., Pavlish, J., Leete, J., and Alexander, Jr., E. 2003. Quarrying Impacts on Groundwater Flow Paths. Sinkholes and the Engineering and Environmental Impacts of Karst: pp. 216-222. Proceedings of the Ninth Multidisciplinary Conference on Sinkholes and the Engineering and Environmental Impacts of Karst, held in Huntsville, Alabama, September 6-10, 2003. Available: https://conservancy.umn.edu/bitstream/handle/11299/188252/Quarrying%20impacts%20on%20groundwater%20flow%20paths_9th%20sinkhole%20conference%20proceedings.pdf?sequence=1&isAllowed=y</a >

Hong, Y., Y. Kim, and K. Lee. 2012. Methylmercury Exposure and Health Effects. Journal of Preventive Medicine & Public Health 45:353–363. Available: https://www.jpmph.org/journal/view.php?doi=10.3961/jpmph.2012.45.6.353</a >

Kormas, K. and D. S. Lymperopoulou. 2013. Cyanobacterial Toxin Degrading Bacteria: Who Are They? BioMed Research International. Volume 2013, Article ID 463894. Available: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3690202/pdf/BMRI2013-463894.pdf</a >.

Lehman, P.W., K. Marr, G.L. Boyer, S. Acuna, and S.J. Teh. 2013. Long-term trends and causal factors associated with Microcystis abundance and toxicity in San Francisco Estuary and implications for climate change impacts. Hydrobiologia 718:141–158. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch27_Public_Health_Env_Haz/Lehman%20et%20al_2013_trends.pdf</a >

Massey, I., F. Yang, Z. Ding, S. Yang, J. Guo, C. Tezi, M. Al-Osman, R. Kamegni, and W. Zeng. 2018. Exposure Routes and Health Effects of Microcystins on Animals and Humans: A Mini-review. Toxicon. 151. 10.1016/j.toxicon.2018.07.010. Copyright protected. See introduction for more information.

Mozaffarian, D. and E.B. Rimm. 2006. Fish Intake, Contaminants, and Human Health—Evaluating the Risks and the Benefits. JAMA 296(15):1885-1899. Available: https://jamanetwork.com/journals/jama/fullarticle/203640</a >. Copyright protected. See introduction for more information.

National Parks Service. n.d. Fire Terminology. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch27_Public_Health_Env_Haz/NPS_FireTerminology.pdf</a >

Snyder, R.E. et al. 2020. West Nile Virus in California, 2003-2018: A Persistent Threat. Available at: https://journals.plos.org/plosntds/article?id=10.1371/journal.pntd.0008841#abstract1</a >.

State Water Resources Control Board. 2017a. Final Part 2 of the Water Quality Control Plan for Inland Surface Waters, Enclosed Bays, Estuaries of California—Tribal and Subsistence Fishing Beneficial Uses and Mercury Provisions. Available: https://www.waterboards.ca.gov/water_issues/programs/mercury/docs/hg_prov_final.pdf</a >.

State Water Resources Control Board. 2017c. Final Staff Report, Including Substitute Environmental Documentation for Part 2 of the Water Quality Control Plan for Inland Surface Waters, Enclosed Bays, and Estuaries of California—Tribal and Subsistence Fishing Beneficial Uses and Mercury Provisions. May 2. Available: https://www.waterboards.ca.gov/water_issues/programs/mercury/docs/hg_SR_final.pdf</a >.

State Water Resources Control Board. 2020. Tribal Beneficial Uses Fact Sheet. November. Available: https://www.waterboards.ca.gov/tribal_affairs/docs/tbu_fact_sheet_v04.pdf</a >.

University of California, Davis Health. 2017. Hantavirus pulmonary syndrome: What are the risks? Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch27_Public_Health_Env_Haz/UC_Davis_2017.pdf</a >

U.S. Environmental Protection Agency. 2014. Cyanobacteria and Cyanotoxins: Information for Drinking Water Systems. EPA-810F11001. September. Available: https://www.epa.gov/sites/production/files/2014-08/documents/cyanobacteria_factsheet.pdf</a >.

U.S. Environmental Protection Agency. 2015. Recommendations for Public Water Systems to Manage Cyanotoxins in Drinking Water. Available: https://www.epa.gov/sites/production/files/2018-11/documents/cyanotoxin-management-drinking-water.pdf</a >.

U.S. Environmental Protection Agency. 2016. Human Health Recreational Ambient Water Quality Criteria or Swimming Advisories for Microcystins and Cylindrospermopsin. Draft. December. Available at: https://www.epa.gov/sites/production/files/2016-12/documents/draft-hh-rec-ambient-water-swimming-document.pdf</a >.

U.S. Environmental Protection Agency. 2017. How Your Septic System Can Impact Nearby Water Sources. Available: https://www.epa.gov/septic/how-your-septic-system-can-impact-nearby-water-sources</a >.

U.S. Environmental Protection Agency. 2019a. How People are Exposed to Mercury. Available: https://www.epa.gov/mercury/how-people-are-exposed-mercury#mercurycompounds</a >.

U.S. Environmental Protection Agency. 2019b. Exposure to CyanoHABs. Available: https://www.epa.gov/cyanohabs/exposure-cyanohabs</a >.

U.S. Environmental Protection Agency. 2019c. Recommended Human Health Recreational Ambient Water Quality Criteria or Swimming Advisories (AWQC/SA) for Microcystins and Cylindrospermopsin. EPA 822-R-19-001. Available: https://www.epa.gov/sites/production/files/2019-05/documents/hh-rec-criteria-habs-document-2019.pdf</a >.

U.S. Environmental Protection Agency. 2020a. Health Effects from Cyanotoxins. Available: https://www.epa.gov/cyanohabs/health-effects-cyanotoxins</a >.

U.S. Environmental Protection Agency. 2020b. EPA Drinking Water Health Advisories for Cyanotoxins. Available: https://www.epa.gov/cyanohabs/epa-drinking-water-health-advisories-cyanotoxins</a >.

U.S. Geological Survey. 1952. 15 Minute Series Maxwell Quadrangle Topographic Map. U.S. Department of the Interior. Washington, D.C. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch27_Public_Health_Env_Haz/USGS_1952_MaxwellTopo.pdf</a >

U.S. Geological Survey. n.d. Cyanobacterial (Blue-Green Algal) Blooms: Tastes, Odors, and Toxins. Kansas Water Science Center. Available: https://www.usgs.gov/centers/kswsc/science/cyanobacterial-blue-green-algal-blooms-tastes-odors-and-toxins-0?qt-science_center_objects=0#qt-science_center_objects</a >.

Western Regional Climate Center. 2020. Climate Data Summary. Sacramento and Redding, California. Accessed: November 13, 2020. Available: Sacramento: (https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch27_Public_Health_Env_Haz/WRCC_2020_ClimateDataSummary_Sacramento.pdf</a >); Redding: (https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch27_Public_Health_Env_Haz/WRCC_2020_ClimateDataSummary_Redding.pdf</a >)

Wiener, J.G., C.C. Gilmour, and D.P. Krabbenhoft. 2003. Mercury Strategy for the Bay-Delta Ecosystem: A Unifying Framework for Science, Adaptive Management, and Ecological Restoration. Final Report to the California Bay Delta Authority. Available: https://www.researchgate.net/publication/228981225_Mercury_strategy_for_the_bay-delta_ecosystem_a_unifying_framework_for_science_adaptive_management_and_ecological_restoration</a >.

Yolo County. 2021a. Office of Emergency Services. Available: https://www.yolocounty.org/general-government/general-government-departments/office-of-emergency-services</a >.

Yolo County. 2021b. Yolo County Evacuation Maps. Available: https://www.yolocounty.org/general-government/general-government-departments/office-of-emergency-services/emergency-preparedness-resources/evacuation/-fsiteid-1</a >.

Chapter 28

Ackerly, D., A. Jones, M. Stacey, and B. Riordan. 2018. San Francisco Bay Area Summary Report. California’s Fourth Climate Change Assessment. University of California, Berkeley. Publication number: CCCA4-SUM-2018-005. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch28_Climate_Change/Ackerlyetal_2018_SFBayAreaRegionalReport.pdf</a >

Bedsworth, L., D. Cayan, G. Franco, L. Fisher, and S. Ziaja. 2018. Statewide Summary Report. California’s Fourth Climate Change Assessment. SUMCCCA4-2018-013. California Governor’s Office of Planning and Research, Scripps Institution of Oceanography, California Energy Commission, and California Public Utilities Commission. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch28_Climate_Change/Bedsworth%20et%20al.%202018_Statewide_Summary_Report.pdf</a >

Bever, A.J., M.L. MacWillams, D.K. Fullerton. 2018, Influence of an Observer Decadal Decline in Wind Speed on Turbidity in the San Francisco Estuary. Estuaries and Coasts. Available: https://doi.org/10.1007/s12237-018-0403-x</a >.

Bureau of Reclamation. 2016. Sacramento and San Joaquin Rivers Basin Study: Basin Study Technical Report. Prepared for Reclamation by CH2M Hill. Available: https://www.usbr.gov/watersmart/bsp/docs/finalreport/sacramento-sj/Sacramento_SanJoaquin_TechnicalReport.pdf</a >.

Bureau of Reclamation. 2019. Reinitiation of Consultation on the Coordinated Long-Term Operation of the Central Valley Project and State Water Project Final Environmental Impact Statement. Available: https://www.usbr.gov/mp/nepa/includes/documentShow.php?Doc_ID=41664</a >.

California Department of Water Resources. 2018. California Water Plan Update. Available: https://water.ca.gov/programs/california-water-plan/update-2018</a >.

California Department of Water Resources. 2020a. Water Resilience Portfolio. Available: https://waterresilience.ca.gov/wp-content/uploads/2020/07/Final_California-Water-Resilience-Portfolio-2020_ADA3_v2_ay11-opt.pdf</a >

California Department of Water Resources. 2020b. Final EIR for State Water Project Long-Term Operations. Available: https://water.ca.gov/News/Public-Notices/2020/March-2020/Final-EIR-for-SWP-Operations</a >.

California Natural Resources Agency. 2018. California Climate Change Adaptation Strategy and Safeguarding California Plan Update. Available: https://resources.ca.gov/CNRALegacyFiles/docs/climate/safeguarding/update2018/safeguarding-california-plan-2018-update.pdf</a >

Contra Costa Water District and Bureau of Reclamation. 2017. Los Vaqueros Reservoir Expansion Project Draft Supplement to the Final EIS/EIR. Chapter 5. Available: https://ccwater.com/710/Environmental-Documents</a >.

Cook, B. 2012. Drought and Wildlife: Explore the Connection. Michigan State University Extension. October 17. Available: https://www.canr.msu.edu/news/drought_and_wildlife_explore_the_connection</a >.

Council on Environmental Quality. 2016. Final Guidance for Federal Departments and Agencies on Consideration of Greenhouse Gas Emissions and the Effects of Climate Change in National Environmental Policy Act Reviews. (Withdrawn in April 2017 and then new draft guidance was issued in June 2019.) Available: https://www.govinfo.gov/content/pkg/FR-2016-08-05/pdf/2016-18620.pdf</a >

Goode, R., S. Gaughen, M. Fierro, D. Hankins, K. Johnson-Reyes, B. R. Middleton, T. R. Owl, and R. Yonemura. 2018. Summary Report from Tribal and Indigenous Communities within California. Available: https://www.energy.ca.gov/sites/default/files/2019-11/Statewide_Reports-SUM-CCCA4-2018-010_TribalCommunitySummary_ADA.pdf</a >.

Houlton, B., and J. Lund. 2018. Sacramento Summary Report. California’s Fourth Climate Change Assessment. SUM-CCCA4-2018-002. University of California, Davis. Available: https://www.energy.ca.gov/sites/default/files/2019-11/Reg_Report-SUM-CCCA4-2018-002_SacramentoValley_ADA.pdf</a >

Huber-Lee, A., D. Yates, D. Purkey, W. Yu, and B. Runkle. 2003. Water, Climate, Food, and Environment in the Sacramento Basin. Contribution to the project ADAPT-Adaptation strategies to changing environments, Stockholm Environment Institute. Boston, MA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch28_Climate_Change/Huber-Lee_etal_2003_Water%20Climate%20Food%20and%20Environment%20in%20the%20Sacramento%20Basin.pdf</a >

IEP MAST. 2015. Interagency Ecological Program for the San Francisco Bay/Delta Estuary. Technical Report 90. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1089%20IEP_MAST_Team_2015_Delta_Smelt_MAST_Synthesis_Report_January%202015.pdf</a >.

Intergovernmental Panel on Climate Change. 2018. Summary for Policymakers. In V. Masson-Delmotte, P. Zhai, H.-O. Pörtner, D. Roberts, J. Skea, P.R. Shukla, A. Pirani, W. Moufouma-Okia, C. Péan, R. Pidcock, S. Connors, J.B.R. Matthews, Y. Chen, X. Zhou, M.I. Gomis, E. Lonnoy, T. Maycock, M. Tignor, and T. Waterfield (eds.), Global Warming of 1.5°C: An IPCC Special Report on the Impacts of Global Warming of 1.5°C above Pre-Industrial Levels and Related Global Greenhouse Gas Emission Pathways, in the Context of Strengthening the Global Response to the Threat of Climate Change, Sustainable Development, and Efforts to Eradicate Poverty. In Press. Available: https://www.ipcc.ch/site/assets/uploads/sites/2/2022/06/SPM_version_report_LR.pdf</a >.

Livneh, B., T. Bohn, D. W. Pierce, F. Munoz-Arriola, B. Nijssen, R. Vose, D. R. Cayan, and L. Brekke. 2015. A Spatially Comprehensive, Hydrometeorological Data Set for Mexico, the U.S., and Southern Canada 1950–2013. Sci Data 2, 150042. Available: https://doi.org/10.1038/sdata.2015.42</a >.

Natali, S. M., J. P. Holdren, B. M. Rogers, R. Treharne, P. B. Duffy, R. Pomerance, and E. MacDonald. 2021. Permafrost Carbon Feedbacks Threaten Global Climate Goals. Proceedings of the National Academy of Sciences 118: 21 e210016118. Available: https://www.pnas.org/doi/epdf/10.1073/pnas.2100163118</a >.

Nolte, C. G., P. D. Dolwick, N. Fann, L. W. Horowitz, V. Naik, R. W. Pinder, T. L. Spero, D. A. Winner, and L. H. Ziska. 2018. Air Quality. In D. R. Reidmiller, C. W. Avery, D. R. Easterling, K. E. Kunkel, K. L. M. Lewis, T. K. Maycock, and B. C. Stewart (eds.), Impacts, Risks, and Adaptation in the United States: Fourth National Climate Assessment, Volume II. Washington, DC: U.S. Global Change Research Program. Available: doi:10.7930/NCA4.2018.CH13. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch28_Climate_Change/Nolte%20et%20al.%202018_NCA4_Ch13_Air-Quality_Full.pdf</a >

Schoellhamer, D. H., S. A. Wright, and J. Drexler. 2012. A Conceptual Model of Sedimentation in the Sacramento–San Joaquin Delta. San Francisco Estuary and Watershed Science 10(3). Available: doi: https://doi.org/10.15447/sfews.2012v10iss3art3</a >.

Schwarz, A., P. Ray, S. Wi, C. Brown, M. He, and M. Correa. 2018. Climate Change Risk Faced by the California Central Valley Water Resource System. California’s Fourth Climate Change Assessment. Publication number: CCCA4-EXT-2018-001. Available: https://www.energy.ca.gov/sites/default/files/2019-12/Water_CCCA4-EXT-2018-001_ada.pdf</a >. Accessed: July 20, 2021.

Sommer, T. 2020. How to Respond? An Introduction to Current Bay-Delta Natural Resources Management Options. San Francisco Estuary and Watershed Science 18(3). Available: https://escholarship.org/uc/item/89k39485</a >

State of California. 2018. “California’s Fourth Climate Change Assessment.” Sacramento, CA: State of California Governor’s Office of Planning and Research, California Natural Resources Agency, and California Energy Commission. Available: https://climateassessment.ca.gov/</a >.

Swain, D. L., B. Langenbrunner, J. D. Neelin, and A. Hall. 2018. Increasing precipitation volatility in twenty-first-century California. Nature Climate Change 8:427–433. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch28_Climate_Change/Swainetal_2018.pdf</a >

U.S. Environmental Protection Agency. 2023. Basics of Climate Change. Available: https://www.epa.gov/climatechange-science/basics-climate-change</a >.

Vroom, J., M. van der Wegen, R. C. Martyr-Koller, and L. V. Lucas. 2017. What Determines Water Temperature Dynamics in the San Francisco Bay-Delta System? Water Resources Research 53:9901–9921. Available: https://doi.org/10.1002/2016WR020062</a >.

Wang, J., H. Yin, J. Anderson, E. Reyes, T. Smith, and F. Chung. 2018. Mean and Extreme Climate Change Impacts on the State Water Project. California’s Fourth Climate Change Assessment. Publication number: CCCA4‐EXT‐2018‐004. Available: https://www.energy.ca.gov/sites/default/files/2019-12/Water_CCCA4-EXT-2018-004_ada.pdf</a >.

Zeug, S. C., M. Beakes, J. Wiesenfeld, M. Greenwood, L. Grimaldo, J. Hassrick, A. Collins, S. Acuña, and M. Johnston. 2021. Experimental Quantification of Piscivore Density and Habitat Effects on Survival of Juvenile Chinook Salmon in a Tidal Freshwater Estuary. Estuaries and Coasts 44:1157–1172. Available: https://doi.org/10.1007/s12237-020-00836-8</a >. Copyright protected. See introduction for more information.

Chapter 29

Bureau of Reclamation. 2017. Record of Decision, Long-Term Plan to Protect Adult Salmon in the Lower Klamath River, Final Environmental Impact Statement. Available: https://www.usbr.gov/mp/nepa/includes/documentShow.php?Doc_ID=28314</a >.

Bureau of Reclamation. 2021a. Indian Trust Assets Determination, North of Delta Offstream Storage/Sites Reservoir (Alternatives 1 and 3). Approved June 21, 2021. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch29_Indian_Trust_Assets/USDOI_Reclamation_2021a_%20ITA_Determin_Alts1_3.pdf</a >

Bureau of Reclamation. 2021b. Indian Trust Assets Determination, North of Delta Offstream Storage/Sites Reservoir (Alternative 2). Approved June 21, 2021. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch29_Indian_Trust_Assets/USDOI_Reclamation_2021b_ITA_Determin_Alt2.pdf</a >

Department of Interior. 1995. Departmental Manual 512, Chapter 2: Departmental Responsibilities for Indian Trust Resources. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch29_Indian_Trust_Assets/DOI_1995_512%20DM%202.pdf</a >

Department of Interior. 1997. Secretarial Order 3206: American Indian Tribal Rights, Federal-Tribal Trust Responsibilities, and the Endangered Species Act. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch29_Indian_Trust_Assets/DOI_1997_SO3206.pdf

Chapter 30

Bureau of Reclamation. 2012. Reclamation’s NEPA Handbook. Available: https://www.usbr.gov/nepa/docs/NEPA_Handbook2012.pdf</a >.

Bureau of Reclamation. 2019. Memorandum regarding Directives Resulting from the Central Valley Project Power Initiative. To: Ernest Conant, Regional Director, Mid Pacific Region; Karl Stock, Acting Director, Policy and Administration; Max Spiker, Senior Advisor Hydropower. From: Brenda Burman Commissioner. June 25. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch30_Env_Just_Socio/Reclamation_2019.pdf</a >

Bureau of Reclamation. n.d. California-Great Basin Region, Central Valley Project. Available: https://www.usbr.gov/mp/mpr-news/docs/factsheets/cvp.pdf</a >.

California Department of Food and Agriculture. 2019. Agricultural Statistics Review 2018-2019. Available: https://www.cdfa.ca.gov/statistics/PDFs/2018-2019AgReportnass.pdf</a >.

California Department of Water Resources. 2020. SWP Management. Available: https://water.ca.gov/Programs/State-Water-Project/Management</a >.

California Employment Development Department. 2020. Employment by Industry Data. Historical Annual Average Data for Glenn, Colusa, and Yolo Counties. Available: http://www.labormarketinfo.edd.ca.gov/data/employment-by-industry.html</a >.

California State Parks. 2005. Park and Recreation Trends in California. Available: https://www.fs.usda.gov/Internet/FSE_DOCUMENTS/stelprdb5389200.pdf</a >.

Council for Community and Economic Research. 2011. ACCRA Cost of Living Index–Selected Urban Areas: Annual Average 2010. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch30_Env_Just_Socio/Council%20for%20Community%20and%20Econ%20Research_2011_12s0728.pdf</a >

Council on Environmental Quality. 1997. Environmental Justice Guidance Under the National Environmental Policy Act. Available: https://www.epa.gov/sites/production/files/2015-02/documents/ej_guidance_nepa_ceq1297.pdf</a >.

County of Colusa. 2019. Financial Statements and Supplementary Information: Year Ended June 30, 2019. Available: https://www.countyofcolusa.org/DocumentCenter/View/12495/County-of-Colusa-2019-Financial-Statements</a >.

County of Colusa. n.d. Crop Report 2019. Available: https://www.countyofcolusa.org/DocumentCenter/View/12901/2019-Crop-Report?bidId=</a >.

County of Glenn. 2019. Comprehensive Annual Financial Report for the Fiscal Year Ended June 30, 2019. Available: https://www.countyofglenn.net/sites/default/files/2019%20Comprehensive%20Annual%20Financial%20Report%20%28CAFR%29.pdf</a >.

County of Glenn. 2020. 2019 Crop and Livestock Report. Available: https://www.countyofglenn.net/sites/default/files/Agriculture/GLENN-2019%20Annual%20Crop%20%26%20Livestock%20Report.pdf</a >.

County of Yolo. n.d. Yolo County Agricultural Report 2019. Available: https://www.yolocounty.org/home/showdocument?id=65348</a >.

Federal Interagency Working Group on Environmental Justice. 2016. Promising Practices for EJ Methodologies in NEPA Reviews. Available: https://www.epa.gov/sites/production/files/2016-08/documents/nepa_promising_practices_document_2016.pdf</a >.

Sites Project Authority. 2017. Sites Reservoir Project Draft EIR/EIS, Appendix 22D: Urban Water Supply Economics Modeling. Available: https://sitesproject.org/wp-content/uploads/2018/03/22-APP_22C_SitesDraftEIR-EIS_August2017.pdf</a >.

State Water Resources Control Board. 2017. Final Staff Report, Including Substitute Environmental Documentation for Part 2 of the Water Quality Control Plan for Inland Surface Waters, Enclosed Bays, and Estuaries of California—Tribal and Subsistence Fishing Beneficial Uses and Mercury Provisions. May 2. Available: https://www.waterboards.ca.gov/water_issues/programs/mercury/docs/hg_SR_final.pdf</a >.

U.S. Census Bureau. 2020a. ACS Demographic and Housing Estimates Characteristics. Available: https://data.census.gov/cedsci/table?q=Glenn%20County,%20California&g=0500000US06011,06021&d=ACS%205-Year%20Estimates%20Data%20Profiles&tid=ACSDP5Y2019.DP05&hidePreview=true</a >.

U.S. Census Bureau. 2020b. Selected Economic Characteristics. Available: https://data.census.gov/cedsci/table?q=Glenn%20County,%20California&g=0500000US06011,06021&d=ACS%205-Year%20Estimates%20Data%20Profiles&tid=ACSDP5Y2019.DP03&hidePreview=true=</a >.

U.S. Environmental Protection Agency. 2004. Toolkit for Assessing Potential Allegations of Environmental Injustice. Available: https://www.epa.gov/sites/production/files/2015-02/documents/ej-toolkit.pdf</a >.

U.S. Environmental Protection Agency. 2020. Environmental Justice. Available: https://www.epa.gov/environmentaljustice</a >.

U.S. Geological Survey. 2019. Domestic Water Use 2015. Available: https://www.usgs.gov/mission-areas/water-resources/science/domestic-water-use?qt-science_center_objects=0#qt-science_center_objects

Chapter 31

Bay Delta Live. 2019. North Delta Flow Action 2019 Food Web Study Fact Sheet. Available: https://www.baydeltalive.com/assets/5c92b61032e1bfd2c6a30d4ee74773aa/application/pdf/North_Delta_Food_Web_Study_Fact_Sheet_06272019.pdf</a >.

Bureau of Reclamation. 2007. Temperature Modeling of Folsom Lake, Lake Natoma, and the Lower American River. April 2007. Available: https://www.flow3d.com/wp-content/uploads/2014/08/Temperature-Modeling-of-Folsom-Lake-Lake-Natoma-and-the-Lower-American-River.pdf</a >.

Bureau of Reclamation. 2009. Finding of No Significant Impact, Water Year 2010 Interim Flows Project, San Joaquin River Restoration Program. FONSI-09-09-MP. December 2009. Available: https://www.usbr.gov/mp/nepa/includes/documentShow.php?Doc_ID=4403</a >.

Bureau of Reclamation. 2012. Rock Slough Fish Screen Hydraulic Evaluation. Hydraulic Laboratory Technical Memorandum PAP-1067. September 2012. Available: https://www.usbr.gov/tsc/techreferences/hydraulics_lab/pubs/PAP/PAP-1067.pdf</a >.

Bureau of Reclamation. 2013. San Luis Reservoir Expansion, Draft Appraisal Report. December 2013. Available: https://www.usbr.gov/mp/sllpp/docs/2013-11-19-draft-san-luis-expansion-appraisal-report.pdf</a >.

Bureau of Reclamation. 2015. Reclamation Releases Finding of No Significant Impact for Knights Landing Outfall Gates Fish Passage Project. September 22, 2015. Available: https://www.usbr.gov/newsroom/newsroomold/newsrelease/detail.cfm?RecordID=50440</a >.

Bureau of Reclamation. 2019. Upper San Joaquin River Basin Storage Investigation. Last updated: December 31, 2019. Available: https://www.usbr.gov/mp/sccao/storage/</a >.

Bureau of Reclamation. 2020a. Joint Federal Project. Last updated: July 29, 2020. Available: https://www.usbr.gov/mp/jfp/index.html</a >.

Bureau of Reclamation. 2020b. Project Details for Folsom Dam Safety and Flood Damage Reduction EIS/EIR, Folsom Dam Safety and Flood Damage Reduction Supplemental Environmental Assessment/Initial Study, and Folsom Dam Safety and Flood Damage Reduction Project Right Bank Stabilization FONSI. Available: https://www.usbr.gov/mp/nepa/nepa_project_details.php?Project_ID=1808</a >.

Bureau of Reclamation. 2020c. Willows Construction Office, Franks Tract Project. Last updated: July 29, 2020. Available: https://www.usbr.gov/mp/frankstract/</a >.

Bureau of Reclamation. 2020d. Contra Costa Water District Alternative Intake Project EIR/EIS. Available: https://www.usbr.gov/mp/nepa/nepa_project_details.php?Project_ID=1818</a >.

Bureau of Reclamation. 2020e. Reclamation and Contra Costa Water District Advance Plan To Increase Water Reliability. February 28, 2020. Available: https://www.usbr.gov/newsroom/newsroomold/newsrelease/detail.cfm?RecordID=69643</a >.

Bureau of Reclamation. 2020f. San Luis Reservoir Low Point Improvement Project (SLLPIP). Available: https://www.usbr.gov/mp/sllpp/</a >.

Bureau of Reclamation. 2020g. Trump Administration Advances Plan to Increase San Luis Reservoir Water Storage. December 30, 2020. Available: https://www.usbr.gov/newsroom/newsroomold/newsrelease/detail.cfm?RecordID=73366</a >.

Bureau of Reclamation. 2020h. Shasta Lake Water Resources Investigation. Available: https://www.usbr.gov/mp/ncao/shasta-lake.html</a >.

Bureau of Reclamation. 2020i. Shasta Lake Water Resources Investigation EIS. Available: https://www.usbr.gov/mp/nepa/nepa_project_details.php?Project_ID=1915</a >.

Bureau of Reclamation. 2020j. Record of Decision: Reinitiation of Consultation on the Coordinated Long-Term Modified Operations of the Central Valley Project and State Water Project. February 2020. Available: https://www.usbr.gov/mp/nepa/includes/documentShow.php?Doc_ID=42324</a >.

Bureau of Reclamation. 2021a. Fremont Weir Adult Fish Passage Modification Project. Last updated: March 8, 2021. Available: https://www.usbr.gov/mp/bdo/fremont-weir.html</a >.

Bureau of Reclamation. 2021b. Yolo Bypass Salmonid Habitat Restoration and Fish Passage. Last updated: June 7, 2021. Available: https://www.usbr.gov/mp/bdo/yolo-bypass.html</a >.

Bureau of Reclamation. 2021c. Upper Sacramento River Anadromous Fish Habitat Restoration Program. Available: https://www.usbr.gov/mp/nepa/nepa_project_details.php?Project_ID=23758</a >.

Bureau of Reclamation. 2021d. Project Details: B.F. Sisk Dam Raise and Reservoir Expansion Project. Available: https://www.usbr.gov/mp/nepa/nepa_project_details.php?Project_ID=44425</a >.

Bureau of Reclamation, U.S. Army Corps of Engineers, California Department of Water Resources, State of California Reclamation Board, and Sacramento Area Flood Control Agency. 2006. Folsom Dam Safety and Flood Damage Reduction Draft Environmental Impact Statement/Environmental Impact Report. Chapter 3, Affected Environment, Impacts Analyses, and Mitigation Measures.

CALFED Bay-Delta Program. 2000. Levee System Integrity Program Plan. Available: http://s3-us-west-2.amazonaws.com/ucldc-nuxeo-ref-media/677f7439-2b07-4494-a627-4a96260226fa</a >.

California Department of Fish and Wildlife. 2017. Cache Slough Complex. Public Draft. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=149819&inline</a >.

California Department of Fish and Wildlife. 2018. Executive Summary: Franks Tract Futures? Available: https://franks-tract-futures-ucdavis.hub.arcgis.com/pages/project-background</a >.

California Department of Fish and Wildlife. 2020a. Incidental Take Permit for the Long-Term Operation of the State Water Project in the Sacramento San Joaquin Delta. March 31, 2020. Available: https://water.ca.gov/-/media/DWR-Website/Web-Pages/Programs/State-Water-Project/Files/ITP-for-Long-Term-SWP-Operations.pdf?la=en&hash=AE5FF28E0CB9FA5DC67EF1D6367C66C5FF1B8B55</a >.

California Department of Fish and Wildlife. 2020b. Ecosystem Restoration Program (ERP). Available: https://nrm.dfg.ca.gov/ERP/Default.aspx</a >.

California Department of Fish and Wildlife. 2020c. Franks Tract Futures Landing Page. Available: https://franks-tract-futures-ucdavis.hub.arcgis.com/</a >.

California Department of Natural Resources. 2020. Knights Landing Outfall Gate Fish Barrier Project. Available: https://resources.ca.gov/CNRALegacyFiles/docs/ecorestore/projects/Knights_Landing_Outfall_Gate.pdf</a >.

California Department of Water Resources. 2011. Delta Risk Management Strategy Phase 2 Executive Summary. June. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/SJRECWA/SJRECWA_2.pdf.pdf</a >

California Department of Water Resources. 2016. System Reoperation: A Resource Management Strategy of the California Water Plan. July 29, 2016. Available: https://water.ca.gov/-/media/DWR-Website/Web-Pages/Programs/California-Water-Plan/Docs/RMS/2016/06_System_Reoperation_July2016.pdf</a >.

California Department of Water Resources. 2020a. Delta Levees Maintenance Subventions. Available: https://water.ca.gov/Work-With-Us/Grants-And-Loans/Delta-Levees-Maintenance-Subventions</a >.

California Department of Water Resources. 2020b. Delta Levees Special Flood Control Projects. Available: https://water.ca.gov/Work-With-Us/Grants-And-Loans/Delta-Levees-Special-Flood-Control-Projects#:~:text=The%20Delta%20Levees%20Special%20Flood,cultural%20resources%20in%20the%20Delta</a >.

California Department of Water Resources. 2020c. Oroville Facilities (P-2100). Available: https://water.ca.gov/Programs/State-Water-Project/SWP-Facilities/Oroville/HLPCO-Oroville-Facilities-Project-2100</a >.

California Department of Water Resources. 2020d. North Delta Program. Available: https://water.ca.gov/Programs/Flood-Management/Delta-Conveyance-And-Flood-Protection/North-Delta-Program</a >.

California Department of Water Resources. 2020e. Delta Conveyance. Available: https://water.ca.gov/deltaconveyance</a >.

California Department of Water Resources. 2020f. South Delta Temporary Barriers Project. Available: https://water.ca.gov/Programs/Bay-Delta/Water-Quality-And-Supply/South-Delta-Temporary-Barriers-Project</a >.

California Department of Water Resources. 2021a. Small Communities Flood Risk Reduction. Available: https://water.ca.gov/Work-With-Us/Grants-And-Loans/Small-Communities-Flood-Risk-Reduction</a >.

California Department of Water Resources. 2021b. Yolo Bypass Salmonid Habitat Restoration and Fish Passage Projects. Available: https://water.ca.gov/Programs/Integrated-Science-and-Engineering/Restoration-Mitigation-Compliance/Yolo-Bypass-Projects</a >.

California Department of Water Resources. 2022. Draft Environment Impact Report for the Delta Conveyance Project. Available: https://www.deltaconveyanceproject.com/planning-processes/california-environmental-quality-act/draft-eir/draft-eir-document</a >.

California Energy Commission. 2021. Colusa Generating Station. Available: https://www.energy.ca.gov/powerplant/combined-cycle/colusa-generating-station</a >.

California Natural Resources Agency. 2020a. Levee Evaluations Program. Available: https://bondaccountability.resources.ca.gov/Program.aspx?ProgramPK=86&Program=Levee%20Evaluations%20Program&PropositionPK=5</a >.

California Natural Resources Agency. 2020b. Lower Yolo Restoration Project. Available: https://resources.ca.gov/CNRALegacyFiles/docs/ecorestore/projects/Lower_Yolo_Restoration.pdf</a >.

California Natural Resources Agency. 2020c. Project: North Delta Flood Control and Ecosystem Restoration Project. Available: https://bondaccountability.resources.ca.gov/Project.aspx?ProjectPK=8461&PropositionPK=5</a >.

California Natural Resources Agency. 2020d. Project: Rock Slough Water Quality Improvements: Contra Costa Canal Replacement Project. Available: http://bondaccountability.resources.ca.gov/Project.aspx?ProjectPK=9461&PropositionPK=4</a >.

California Natural Resources Agency. 2021. Wallace Weir Fish Rescue Facility Project. Available: https://resources.ca.gov/CNRALegacyFiles/docs/ecorestore/projects/Wallace_Weir_Modification.pdf</a >.

California Office of Planning and Research. 2008. CEQA Net: American Basin Fish Screen and Habitat Improvement Project. Available: https://ceqanet.opr.ca.gov/2003092006/2</a >.

California Public Utilities Commission 2021. Before The Public Utilities Commission of the State of California — Order Instituting Rulemaking to Continue Electric Integrated Resource Planning and Related Procurement Processes. Rulemaking 20-05-003 Administrative Law Judge’s Ruling Seeking Feedback On Mid-Term Reliability Analysis and Proposed Procurement Requirements February 22, 2021. https://docs.cpuc.ca.gov/PublishedDocs/Efile/G000/M367/K037/367037415.PDF</a >

California Water Boards. 2020. San Francisco Bay/Sacramento – San Joaquin Delta Estuary (Bay-Delta) Watershed Efforts: Bay-Delta Plan Update. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/</a >.

Central Valley Joint Venture. 2020. Conserving Migratory Birds and Their Habitats in the Central Valley Area of California. Available: http://www.centralvalleyjointventure.org/</a >.

Central Valley Regional Water Quality Control Board. 2002. Amending the Water Quality Control Plan for the Sacramento River and San Joaquin River Basins for the Control of Mercury in Clear Lake. Resolution No. R5-2002-0207. Available: https://www.waterboards.ca.gov/centralvalley/board_decisions/adopted_orders/resolutions/r5-2002-0207.pdf</a >.

Central Valley Regional Water Quality Control Board. 2005. Amending the Water Quality Control Plan for the Sacramento River and San Joaquin River Basins for the Control of Mercury in Cache Creek, Bear Creek, Sulphur Creek, and Harley Gulch. Resolution No. R5-2005-0146. Available: https://www.waterboards.ca.gov/centralvalley/board_decisions/adopted_orders/resolutions/r5-2005-0146.pdf</a >.

Central Valley Regional Water Quality Control Board. 2010. American River Watershed Methylmercury TMDL & Mercury Control Program Information Sheet. Available: https://data.sacriver.org/assets/5ffd2763a1b5d1a3078c4bd991651244/application/pdf/2010oct_arwatershed_merctmdl_info.pdf</a >.

Central Valley Regional Water Quality Control Board. 2011. Amendments to the Water Quality Control Plan for the Sacramento River and San Joaquin River Basins for the Control of Methylmercury and Total Mercury in the Sacramento-San Joaquin River Delta Estuary (Attachment 1 to Resolution No. R5-2010-0043). Available: https://www.waterboards.ca.gov/rwqcb5/water_issues/tmdl/central_valley_projects/delta_hg/2011_1020_deltahg_bpa.pdf</a >.

City of Willows. 2006. Final Environmental Impact Report: Willows Wal-mart Project. January 2006. Available: https://www.cityofwillows.org/assets/resources/Willows-Walmart-Project-FEIR-Final-Environmental-Impact-Report.pdf</a >.

City of Willows. 2020. Initial Study/Subsequent Mitigated Negative Declaration for the South Willows Residential Neighborhood Project. December 1, 2020. Prepared by Willdan Engineering. Available: https://www.cityofwillows.org/assets/resources/South-Willows-Residential-2020-Initial-Study-FINAL-dec-1-2020-BASIN-Amended-Project.pdf</a >.

City of Woodland. 2021a. Lower Cache Creek Feasibility Study (LCCFS). Available: https://www.cityofwoodland.org/1196/Lower-Cache-Creek-Feasibility-Study-LCCF</a >.

City of Woodland. 2021b. Woodland Flood Risk Management Project Final Environmental Impact Report. Available: https://www.cityofwoodland.org/DocumentCenter/View/6628/Woodland_FRMP_Final_EIR_January2021_WEB</a >.

Contra Costa Water District. 2020. Los Vaqueros Reservoir Expansion Project: Project Documents. Available: https://www.ccwater.com/993/Project-Documents</a >.

Del Puerto Canyon Reservoir. 2021. About Del Puerto Canyon Reservoir. Available: https://www.delpuertocanyonreservoir.com</a >.

Delta Stewardship Council. 2020. North Bay Aqueduct. Available: https://viewperformance.deltacouncil.ca.gov/pm/north-bay-aqueduct#:~:text=The%20North%20Bay%20Aqueduct%20Alternate%20Intake%20Project%20(NBA%20AIP)%20will,Slough%20(existing%20intake%20location)</a >.

EcoAtlas. 2022. Restoring Ecosystem Integrity in the Northwest Delta: Phase II. Available: https://www.ecoatlas.org/regions/adminregion/delta/projects/5876</a >.

El Dorado Irrigation District. 2020. Folsom Lake Intake Project. Available: https://www.eid.org/about-us/project-updates/folsom-lake-intake-project</a >.

Glenn-Colusa Irrigation District. 2021. Painter’s Riffle Anadromous Fish Habitat Enhancement Fact Sheet. Available: https://norcalwater.org/wp-content/uploads/PaintersRiffleFact-Sheet-FINAL.pdf</a >.

Lee, P., and J. Manning. 2020. Mercury Imports and Exports of Four Tidal Wetlands in the Sacramento–San Joaquin Delta, Yolo Bypass, and Suisun Marsh for Delta Mercury Control Program Compliance. April 3. Available: https://water.ca.gov/-/media/DWR-Website/%20Web-Pages/Programs/Environmental-Services/Applied-Research/Files/%20Accessible_TW_Final_Report_Combined_ay11.pdf</a >.

Michel, C., J. Notch, F. Cordoleani, A. Ammann, and E. Danner. 2021. Nonlinear Survival of Imperiled Fish Informs Managed Flows in a Highly Modified River. Ecosphere. Available: https://doi.org/10.1002/ecs2.3498</a >.

Northern California Water Association. 2018. Federal Agencies Advance Rural Water Infrastructure for Multi-Benefits in the Sacramento Valley. November. Available: http://www.norcalwater.org</a >.

Northern California Water Association. 2019. Sacramento Valley Salmon Recovery Program. September 2019. Available: https://norcalwater.org/wp-content/uploads/SacValleySalmonRecoveryProgram.fulloct2018.pdf</a >.

Open Water Workgroup. 2020. Mercury Open Water Final Report for Compliance with the Delta Mercury Control Program. August 31. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch31_Cumulative/OpenWaterWorkgroup_2020_MercuryOpenWater.pdf</a >

Reclamation District 108. 2021. Market Street Gravel Project. Available: https://www.rd108.org/market-street-gravel-project/</a >.

Sacramento River Forum. 2021a. Hamilton City Flood Damage Reduction & Ecosystem Restoration Project. Available: https://www.sacramentoriver.org/forum/index.php?id=hamilton_city</a >.

Sacramento River Forum. 2021b. Upper Sacramento River Anadromous Fish Habitat Restoration Program. Available: https://www.sacramentoriver.org/forum/index.php?id=channels</a >.

Sacramento Valley Ecological Restoration. 2021. Sand Slough Side-Channel Enhancement Project. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch31_Cumulative/Sacramento_Valley_Ecological_Restoration_2021_Sand_Slough_Side_Channel_Enhancement_Project.pdf</a >

Sacramento Water Forum. 2015. The Lower American River Modified Flow Management Standard: A Drought Buffer for the Environment and Local Water Supplies. Available: http://www.waterforum.org/wp-content/uploads/2017/08/WF-Modified-FMS-10_8_final_Single.pdf</a >.

Sonoma County Water Agency. 2020. North Bay Aqueduct Alternate Intake Project. Available: https://www.scwa2.com/wp-content/uploads/2020/01/NBA-Funding-Flyer.pdf</a >.

State of California. 2020a. Supplemental Water Rights Project. Available: https://ceqanet.opr.ca.gov/2008102090</a >.

State of California. 2020b. South Delta Temporary Barriers Project (California Endangered Species Act Incidental Take Permit No. 2081-2011-019-03 (ITP) Amendment No. 3). Available: https://ceqanet.opr.ca.gov/2000112054/12</a >.

State of California. 2021. Willows Wal-mart Project. Available: https://ceqanet.opr.ca.gov/2004062128/4</a >.

State Water Resources Control Board. 2017. Draft Staff Report for Scientific Peer Review for the Amendment to the Water Quality Control Plan for Inland Surface Waters, Enclosed Bays, and Estuaries of California, Mercury Reservoir Provisions – Mercury TMDL and Implementation Program for Reservoirs. April. Available: https://www.waterboards.ca.gov/water_issues/programs/mercury/reservoirs/docs/peer_review/02_staff_report_scientific_peer_review.pdf</a >.

State Water Resources Control Board. 2018. Water Quality Control Plan for the San Francisco Bay/Sacramento-San Joaquin Delta Estuary. December 12. Available: https://www.waterboards.ca.gov/plans_policies/docs/2018wqcp.pdf</a >.

Tehama-Colusa Canal Authority. 2013. Fish Passage Improvement Project at the Red Bluff Diversion Dam. Available: https://www.tccanal.com/RBDD-Bro-Spring2013_pages.pdf</a >.

U.S. Army Corps of Engineers. 2021a. Sacramento River Bank Protection Project. Available: https://www.spk.usace.army.mil/Missions/Civil-Works/Sacramento-River-Bank-Protection/</a >.

U.S. Army Corps of Engineers. 2021b. Hamilton City Flood Damage Reduction & Ecosystem Restoration. Available: https://www.spk.usace.army.mil/Missions/Civil-Works/Hamilton-City/</a >.

U.S. Army Corps of Engineers. 2022. Draft Environmental Impact Statement for the Delta Conveyance Project. Available: https://www.deltaconveyanceproject.com/</a >.

U.S. Army Corps of Engineers and Central Valley Flood Protection Board. 2013. Final Environmental Assessment/Initial Study Sacramento River Flood Control System Evaluation, Phase III, Mid-Valley, Contract Area 3, Yolo County, California. April 2013. Available: https://www.spk.usace.army.mil/Portals/12/documents/usace_project_public_notices/MidValley_FINALEAIS.pdf</a >.

U.S. Department of the Interior, Office of the Solicitor. 2014. Trinity River Division Authorization’s 50,000 Acre-Foot Proviso and the 1959 Contract between the Bureau of Reclamation and Humboldt County. M-37030. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch31_Cumulative/DOI_2014_Trin.pdf</a >

U.S. Environmental Protection Agency. 2015. Water Quality Progress Report Sacramento–San Joaquin Delta Estuary—Mercury and Methylmercury. June. Available: https://www.epa.gov/sites/default/files/2015-07/documents/14-sac-sjr-mercury-tmdl-implementation-report-2015-06-15.pdf</a >.

U.S. Fish and Wildlife Service. 2015. Central Valley Project Improvement Act (CVPIA) Project Implementation Division, The Anadromous Fish Screen Program (AFSP). Last updated: December 22, 2015. Available: https://www.fws.gov/cno/fisheries/cvpia/AnadromFishScreen.cfm</a >.

U.S. Fish and Wildlife Service. 2019. Biological Opinion for the Reinitiation of Consultation on the Coordinated Operations of the CVP and SWP. Service File No. 08FBTD00-2019-F-0164. October. Available: https://www.usbr.gov/mp/bdo/lto/archive/biop.html</a >.

Wildlands. 2020. Liberty Island Conservation Bank. Available: https://www.wildlandsinc.com/banks/liberty-island-conservation-bank-salm/</a >.

Woodland-Davis Clean Water Agency. 2020. Project Overview. Available: https://www.wdcwa.com/</a >.

Yolo County. 2019. Knights Landing Small Community Flood Risk Reduction Feasibility Study. July 2019. Available: https://www.yolocounty.org/home/showpublisheddocument?id=58945</a >.

Personal Communications

Tona, Joseph. Tehama County Air Pollution Control Officer. Tehama County Air Pollution Control District. June 30, 2021—Phone call with Cory Matsui, Air Quality and Climate Change Technical Specialist, ICF. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch31_Cumulative/Tona%20pers.%20comm..pdf

Chapter 32

Bureau of Economic Analysis. 2020. Gross Domestic Product (GDP) by County and Metropolitan Area. Available: https://apps.bea.gov/itable/iTable.cfm?ReqID=70&step=1&acrdn=5</a >.

Bureau of Reclamation. 2012. Reclamation, Managing Water in the West Reclamation’s NEPA Handbook. February. Available: https://www.usbr.gov/nepa/docs/NEPA_Handbook2012.pdf</a >.

California Department of Finance. 2021. Demographic Research Unit. Report P-2A: Total Population Projections, California Counties, 2010-2060 (Baseline 2019 Population Projections; Vintage 2020 Release). Sacramento: California. March 2021. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch32_Other_Req_Analyses/CADeptFinance_2021_PopulationProjections_Data.pdf</a >

California Department of Housing and Community Development. 2022. A Home for Every Californian: 2022 Statewide Housing Plan. Available: https://www.hcd.ca.gov/docs/statewide-housing-plan.pdf</a >.

California Department of Water Resources. 2019. Environmental Impact Report for Long-Term Operations of the California State Water Project, Section 4.6.2, Growth Inducing. Draft. State Clearing House No. 2019049121. November. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch32_Other_Req_Analyses/DWR_2019.pdf

Cooley, H., A. Theobo, S. Abraham, M. Shimabuku, P. Gleick, and S. Diringer. 2022. The Untapped Potential of California’s Urban Water Supply: Water Efficiency, Water Reuse, and Stormwater Capture. Pacific Institute. Available: https://pacinst.org/wp-content/uploads/2022/04/PI_California_Untapped_Urban_Water_Potential_2022-1.pdf</a >.

U.S. Census Bureau. 2001. 2000 Decennial Census Data. Available: https://www.census.gov/programs-surveys/decennial-census/guidance/2000.html</a >.

U.S. Census Bureau. 2020. 2019 5-Year American Community Survey Data. Available: https://www.census.gov/data/developers/data-sets/acs-5year.html</a >.

Chapter 33

This chapter does not contain references.

Chapter 34

This chapter does not contain references.

Chapter 35

Bureau of Reclamation and Department of Water Resources (Reclamation and DWR). 2016a. Letter to the U.S. Fish and Wildlife Service to Request for Reinitiation of Section 7 Consultation Addressing the Long-term Operation of the Central Valley Project and State Water Project. August 2. https://sitesreservoirproject.riptideweb.com/references/REF17/_Ch35_Cumulative/Bureau%20of%20Recl_2016a_USFW.pdf</a >

Bureau of Reclamation (Reclamation). 2014. Long-Term Water Transfers Environmental Impact Statement/Environmental Impact Report. Public Draft. September. https://sitesreservoirproject.riptideweb.com/references/REF17/_Ch35_Cumulative/Bureau%20of%20Recl_2014_WaTrans</a >

Bureau of Reclamation (Reclamation). 2013. Record of Decision, Water Transfer Program for the San Joaquin River Exchange Contractors Water Authority, 2014-2038. July 30. https://sitesreservoirproject.riptideweb.com/references/REF17/_Ch35_Cumulative/Bureau%20of%20Recl_2013_WatROD.pdf</a >

Bureau of Reclamation (Reclamation). 2012. Reclamation’s NEPA Handbook. February. Chapters 8-18. http://www.usbr.gov/nepa/docs/NEPA_Handbook2012.pdf</a >.

Bureau of Reclamation (Reclamation), Contra Costa Water District, and Western Area Power Administration. 2010. Los Vaqueros Expansion Project, Environmental Impact Statement/Environmental Impact Report. March. https://sitesreservoirproject.riptideweb.com/references/REF17/_Ch35_Cumulative/Bureau%20of%20Recl_2010_Contra/Los%20Vaqueros%20FEIS%20FEIR</a >

Bureau of Reclamation (Reclamation), Santa Clara Valley Water District, San Luis and Delta-Mendota Water Authority. 2011. San Luis Low Point Improvement Project, Plan Formulation Report. January. https://sitesreservoirproject.riptideweb.com/references/REF17/_Ch35_Cumulative/Bureau%20of%20Recl_2011_Clara.pdf?csf=1&web=1&e=avH7TC</a >

Council on Environmental Equality (CEQ). 2005. Guidance on the Consideration of Past Actions in Cumulative Effects Analysis. Memorandum. June. https://sitesreservoirproject.riptideweb.com/references/REF17/_Ch35_Cumulative/CEQ_2005_Past.pdf</a >

Council on Environmental Equality (CEQ). 1997. Considering Cumulative Effects Under the National Environmental Policy Act. January. https://sitesreservoirproject.riptideweb.com/references/REF17/_Ch35_Cumulative/CEQ_1997_EPA.pdf</a >

Department of Water Resources (DWR). 2011. Scoping Report, North Bay Aqueduct Alternative Intake Project. February. https://sitesreservoirproject.riptideweb.com/references/REF17/_Ch35_Cumulative/DWR_2011_Scop.pdf</a >

Department of Water Resources (DWR). 2010. Environmental Impact Report, North Delta Flood Control and Ecosystem Restoration Project. Final. October. https://sitesreservoirproject.riptideweb.com/references/REF17/_Ch35_Cumulative/DWR_2010_FEIR</a >

Department of Water Resources and Bureau of Reclamation (DWR and Reclamation). 2016. Environmental Impact Report/Environmental Impact Statement for the Bay Delta Conservation Plan/California WaterFix. Final.

Department of Water Resources and Bureau of Reclamation (DWR and Reclamation). 2014. Draft Technical Information for Preparing Water Transfer Proposals (Water Transfer White Paper), Information for Parties Preparing Proposals for Water Transfers Requiring Department of Water Resources or Bureau of Reclamation Approval. November. https://sitesreservoirproject.riptideweb.com/references/REF17/_Ch35_Cumulative/DWR_2014_WhiteP.pdf</a >

Department of Water Resources (DWR), Bureau of Reclamation, U.S. Fish and Wildlife Service, and National Marine Fisheries Service. 2013. Environmental Impact Report/ Environmental Impact Statement for the Bay Delta Conservation Plan. Draft. December.

El Dorado Water & Power Authority. 2008a. Initial Study for the El Dorado Water & Power Authority Supplemental Water Rights Project. October 24. https://sitesreservoirproject.riptideweb.com/references/REF17/_Ch35_Cumulative/EDWPA_2008_IS.pdf</a >

El Dorado Water & Power Authority. 2008b. Notice of Preparation Supplemental Water Rights Project. October 24. https://sitesreservoirproject.riptideweb.com/references/REF17/_Ch35_Cumulative/EDWPA_2008_Prep.pdf</a >

National Marine Fisheries Service (NMFS). 2009. Biological Opinion and Conference Opinion on the Long-Term Operations of the Central Valley Project and State Water Project. Southwest Region. Long Beach, CA. June 4. Available: https://media.fisheries.noaa.gov/2022-02/nmfs-biological-conference-opinion-long-term-operations-cvp-swp.pdf</a >.

State Water Resources Control Board (SWRCB). 2016. Draft Revised Substitute Environmental Document (SED) in Support of Potential Changes to Water Quality Control Plan for the San Francisco Bay-Sacramento/San Joaquin Delta Estuary: San Joaquin River Flows and Southern Delta Water Quality. September 15. https://sitesreservoirproject.sharepoint.com/EnvPlanning/Administrative%20Record/Forms/AllItems.aspx?id=%2FEnvPlanning%2FAdministrative%20Record%2F%5FFinal%20Admin%20Record%2FD%5FFinal%20EIR%2DEIS%2F10%2E0%5F2017%20Draft%20EIR%2DEIS%20Documents%20Cited%2F%5FCh35%5FCumulative%2FSWRCB%5F2016a%5FSED&viewid=5cafacb6%2Dd81e%2D4a85%2Db733%2D0a8459610d4b</a >

State Water Resources Control Board (SWRCB). 2006. Water Quality Control Plan for the San Francisco Bay/Sacramento-San Joaquin Delta Estuary. December 2006. https://sitesreservoirproject.riptideweb.com/references/REF17/_Ch35_Cumulative/EDWPA_2008_Prep.pdf</a >

Yolo Natural Heritage Program. 2009. Local Impacts from Habitat Development and Delta Infrastructure Projects and Suggested Solutions. July 15. https://sitesreservoirproject.riptideweb.com/references/REF17/_Ch35_Cumulative/Yolo_2009_YNHP.pdf

Chapter 36

Bureau of Reclamation (Reclamation) and California Department of Water Resources (CDWR). 2007. Sacramento River Flow Regime Status Report. Administrative Draft. April. https://sitesreservoirproject.riptideweb.com/references/REF17/_Ch35_Cumulative/Yolo_2009_YNHP.pdf</a >

California Department of Water Resources (CDWR) and U.S. Bureau of Reclamation (Reclamation). 2006. North-of-the-Delta Offstream Storage Investigation Initial Alternatives Information Report. May. https://sitesreservoirproject.riptideweb.com/references/REF17/_Ch36_ConsultationandCoordination/DWR%202006_Initial%20Alternatives%20Report</a >

Volume 2

Appendix 01A

Anderson, J. J. 2018. Using River Temperature to Optimize Fish Incubation Metabolism and Survival: A Case for Mechanistic Models. BioRxiv:1–24. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App01A_Intro/Anderson_2018_Using%20River%20Temperature%20to%20Optimize%20Fish%20Incubation%20Metabolism%20and%20Survival.pdf</a >

Martin, B. T., A. Pike, S. N. John, N. Hamda, J. Roberts, S. T. Lindley, and E. M. Danner. 2016. Phenomenological vs. biophysical models of thermal stress in aquatic eggs. Ecology Letters 20:50–59. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App01A_Intro/Martin_et_al_2016_Phenomenological%20vs%20%20biophysical%20models%20of%20thermal%20stress%20in%20aquatic%20eggs.pdf</a >

Nobriga, M. L., and J. A. Rosenfield. 2016. Population Dynamics of an Estuarine Forage Fish: Disaggregating Forces Driving Long-Term Decline of Longfin Smelt in California’s San Francisco Estuary. Transactions of the American Fisheries Society 145(1):44–58. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App01A_Intro/Nobriga_Rosenfield_2016_PopulationDynamicsEstuarineForageFish.pdf</a >

Appendix 02A

Bureau of Reclamation (Reclamation). 2017a. Projects & Facilities, East Park Dam. Website accessed May 1, 2017. https://www.usbr.gov/projects/index.php?id=89</a >.

Bureau of Reclamation (Reclamation). 2017b. Projects & Facilities, Stony Gorge Dam. Website accessed May 1, 2017. https://www.usbr.gov/projects/index.php?id=333</a >.

Bureau of Reclamation (Reclamation). 2013. Shasta Lake Resources Water Resources Investigation, Draft Environmental Impact Statement. June. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App02A_Alts_Screen/Reclamation_2013_ShastaLakeDraftEIS_Appendix.pdf</a >

Bureau of Reclamation (Reclamation). 1973. Paskenta-Newville Unit, Central Valley Project, California, Status Report on a Plan for Water Supply Development. August.

Bureau of Reclamation and Department of Water Resources (Reclamation and DWR). 2006. North-of-the-Delta Offstream Storage Investigation Final Initial Alternatives Information Report. May.

CALFED. 2000. CALFED Bay-Delta Program Final Environmental Impact Statement/Environmental Impact Report.

CALFED. 2000b. Initial Surface Water Storage Screening. August.

CALFED. 2000c. North of the Delta Offstream Storage Investigation, Progress Report. July.

CALFED. 2000d. Programmatic Record of Decision. August 28.

CALFED. 1998. Draft CALFED Conjunctive Use Program.

CALFED. 1997a. Phase II Alternative Descriptions. May 8.

CALFED. 1997b. Decision Process for Selecting the Draft Preferred Alternative. July 11.

CALFED. 1997c. Off-stream Storage Program Proposition 204, Presented at the Off-stream Storage Workshop. November 6.

CALFED 1997d. Estimated Expenditures for Off-Stream Storage Feasibility Studies Authorized under Proposition 204 Funding.

CALFED. 1996. Phase I, Final Documentation Report. September.

California Department of Water Resources (DWR). 2014a. Division of Safety of Dams, Listing of Dams.

California Department of Water Resources (DWR). 2014b. California Data Exchange Center, Reservoir Information, Sorted by Dam Name. Site accessed September 16, 2014. http://cdec.water.ca.gov/misc/resinfo.html</a >.

California Department of Water Resources (DWR). 1996a. Reconnaissance Survey Sites Offstream Storage Project. July. Copyright protected. See introduction for more information.

California Department of Water Resources (DWR). 1980. Thomes-Newville and Glenn Reservoir Plans, Engineering Feasibility. November. Copyright protected. See introduction for more information.

California Department of Water Resources (DWR). 1978. Bulletin 76, Delta Water Facilities Program for: Delta Protection and Water Transfer, Water Conservation, Water Recycling, Surface and Ground Water Storage. July. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App02A_Alts_Screen/DWR_1978_Bulletin%2076.pdf</a >

California Department of Water Resources (DWR). 1975. Major Surface Water Development Opportunities in the Sacramento Valley. February. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App02A_Alts_Screen/DWR_1975_Major%20Surface%20Water%20Development%20Opportunities%20in%20the%20Sacramento%20Valley.pdf</a >

California Department of Water Resources (DWR). 1964. Bulletin 136, North Coastal Area Investigation. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/FOTR/for_95.pdf</a >

California Department of Water Resources (DWR). 1962. Bulletin 109, Colusa Basin Investigation, Preliminary Edition. June. https://ia800908.us.archive.org/20/items/colusabasininves109calirich/colusabasininves109calirich.pdf</a >

California Department of Water Resources (DWR). 1957. Bulletin No. 3. The California Water Plan. May. https://cawaterlibrary.net/document/bulletin-no-3-the-california-water-plan/#:~:text=Bulletin%20No.%203%20The%20California%20Water%20Plan%20California,split%20in%20two%20parts%20because%20of%20the%20size</a >.

Council on Environmental Quality, Executive Office of the President, 1987. Forty Most Asked Questions.

U.S. Army Corps of Engineers (USACE). 1977. Design Memorandum No. 13, Black Butte Lake Master Plan. February. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App02A_Alts_Screen/USACE_1977_BlackButteMasterPlan.pdf

Appendix 02B

Sites Project Authority. 2020b. Final Technical Memorandum on Bridges and Roads. Sites Project Authority. 2020b. Final Technical Memorandum on Bridges and Roads.</a >

Sites Project Authority. 2021. Appendix I, Alternatives to the Terminal Regulating Reservoir, of Final Feasibility Level Basis of Design Report – HC Conveyance Facilities (rev 1). Sites Project Authority. 2021. Appendix I, Alternatives to the Terminal Regulating Reservoir, of Final Feasibility Level Basis of Design Report – HC Conveyance Facilities (rev 1). </a >

Bureau of Reclamation. 2017. Appendix A, Plan Formulation, Table A-1, Summary of Management Measures Considered to Address Water Supply and Reliability Primary Objective. July.

Bureau of Reclamation. 2020. Final Feasibility Report. North-of-the-Delta Offstream Storage Investigation. December. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App02B_Add_Alt_Screen_Eval/BoR_2020_Final%20Feasibility%20Report.%20North-of-the-Delta%20Offstream%20Storage%20Investigation..pdf</a >

Bureau of Reclamation and California Department of Water Resources. 2008. North-of-the-Delta Off Stream Storage Investigation Plan Formulation Report (PFR).

CALFED. 2000. CALFED Bay-Delta Program Final Environmental Impact Statement/Environmental Impact Report.

California Natural Resources Agency. 2016. Delta Smelt Resiliency Strategy. Available at: < https://resources.ca.gov/-/media/CNRA-Website/Files/Initiatives/Delta-Smelt-Resiliency-Strategy/Delta-Smelt-Resiliency-Strategy-FINAL070816.pdf?la=en&hash=BBF18ED9404F9AEDF52202D631DFF02F155C7E25</a >>

California Natural Resources Agency. 2017. Sacramento Valley Salmon Resiliency Strategy. Available at: < https://resources.ca.gov/CNRALegacyFiles/docs/Salmon-Resiliency-Strategy.pdf</a >>

National Marine Fisheries Service. 2014. Recovery Plan for Sacramento River Winter-run Chinook, Central Valley Spring-run Chinook, and Central Valley Steelhead. Available at: < https://www.fisheries.noaa.gov/resource/document/recovery-plan-evolutionarily-significant-units-sacramento-river-winter-run</a >>

National Marine Fisheries Service. 2018. Recovery Plan for the Southern Distinct Population Segment of North American Green Sturgeon. Available at: < https://www.fisheries.noaa.gov/resource/document/final-recovery-plan-southern-distinct-population-segment-north-american-green</a >>

Sites Project Authority. 2020a. Value Planning Report. Available at: https://sitesproject.org/wp-content/uploads/2020/04/INT-REP-Value-Planning-Appraisal-Report-FinalV2Compressed.pdf</a >

Sites Project Authority. 2020b. Final Technical Memorandum on Bridges and Roads.

Sites Project Authority. 2021. Appendix I, Alternatives to the Terminal Regulating Reservoir, of Final Feasibility Level Basis of Design Report – HC Conveyance Facilities (rev 1). June.

Appendix 02C

This appendix was not reproduced in the Final EIR/EIS because there were no changes from the RDEIR/SDEIS. Please see the RDEIR/SDEIS for this appendix.

Appendix 02D

Amberg, J. J., C. M. Merkes, W. Stott, C. B. Rees, and R. A. Erickson. 2019. Environmental DNA as a Tool to Help Inform Zebra Mussel, Dreissena polymorpha, Management in Inland Lakes. Management of Biological Invasions 10(1):96–110, Available: https://doi.org/10.3391/mbi.2019.10.1.06</a >.

California Department of Fish and Game. 2010. California Salmonid Stream Habitat Restoration Manual. Fourth edition. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=22610&inline</a >.

California Department of Fish and Wildlife. 2020. Recommended Minimum Dreissenid Mussel Early Detection Monitoring. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=180290&inline</a >.

California Department of Fish and Wildlife. 2021. California’s Invaders: New Zealand Mudsnail. Available: https://wildlife.ca.gov/Conservation/Invasives/Species/NZmudsnail</a >.

California Department of Water Resources. 2023. California Department of Water Resources Aquatic Pesticides Application Plan Water Quality Order No. 2013-0002-DWQ Statewide General National Pollutant Discharge Elimination System Permit for Residual Aquatic Pesticide Discharges to Waters of the United States from Algae and Aquatic Weed Control Applications. Available: https://water.ca.gov/-/media/DWR-Website/Web-Pages/News/Public-Notices/DWR_APAP_April2023.pdf</a >.

California State Parks Division of Boating and Waterways. 2021a. Floating Aquatic Vegetation. Available: https://dbw.parks.ca.gov/?page_id=28995</a >.

California State Parks Division of Boating and Waterways. 2021b. Submersed Aquatic Vegetation. Available: https://dbw.parks.ca.gov/?page_id=28994</a >.

California State Parks Division of Boating and Waterways. 2021c. Quagga and Zebra Mussels. Available: https://dbw.parks.ca.gov/?page_id=28996</a >.

California Water Quality Monitoring Council. 2017a. Visual Guide to Observing Blooms. From the SWAMP HAB Field Guide. Available https://www.ccamp.net/Swamp/images/3/33/SOP-Visual_Guide_to_Observing_Blooms.pdf</a >.

California Water Quality Monitoring Council. 2017b. Standard Operating Procedures – Site Reconnaissance. Version 1.1. From: SWAMP HAB Field Guide. February 9. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App02D_BMPs_Plans_Studies/CWQMC_2017b_Standard%20Operating%20Procedures%20%E2%80%93%20Site%20Reconnaissance1.pdf</a >

California Water Quality Monitoring Council. 2017c. Standard Operating Procedures – Water Sample Collection for Toxin Analysis. Version 1.3. From: SWAMP HAB Field Guide. August 10. Available: https://www.mywaterquality.ca.gov/habs/resources/field.html#healthandsafety.

California Water Quality Monitoring Council. 2017d. Health and Safety Guide. From: SWAMP HAB Field Guide. Version 1.0, February 9, 2017. Available: https://drive.google.com/file/d/0B40pxPC5g-D0U1BxUlluQ2hjU28/view</a > .

California Water Quality Monitoring Council. 2018. SWAMP’s California Freshwater Harmful Algal Bloom Field Guide. May 30. Available: https://mywaterquality.ca.gov/habs/resources/field.html</a >.

California Water Quality Monitoring Council. 2020. Benthic Mats (Toxic Algal Mats) Signs and Posting Guidelines. Last updated: June 23. Available: https://mywaterquality.ca.gov/habs/resources/benthic_posting_guidance.html</a >.

Chorus, I., and M. Welker (eds.). 2021. Toxic Cyanobacteria in Water. 2nd edition. Boca Raton, FL: CRC Press, on behalf of the World Health Organization. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App02D_BMPs_Plans_Studies/Chorus_Welker_2021_ToxicCyano.pdf</a >

Feist, S. M., and R. F. Lance. 2021. Advanced Molecular-Based Surveillance of Quagga and Zebra Mussels: A Review of Environmental DNA/RNA (eDNA/eRNA) Studies and Considerations for Future Directions. NeoBiota 66:117–159. Available: https://doi.org/10.3897/neobiota.66.60751</a >.

Hall, B. D., V. L. St. Louis, K. R. Rolfhus, R. A. Bodaly, K. G. Beaty, M. J. Paterson, and K. A. Peech Cherewyk. 2005. Impacts of Reservoir Creation on the Biogeochemical Cycling of Methyl Mercury and Total Mercury in Boreal Upland Forests. Ecosystems 8:248–266. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App02D_BMPs_Plans_Studies/Hall-et-al_2005_ImpactsReservoir.pdf</a >

Kelly, C. A., J. W. M. Rudd, R. A. Bodaly, N. P. Roulet, V. L. St. Louis, A. Heyes, T. R. Moore, S. Schiff, R. Aravena, K. J. Scott, B. Dyck, R. Harris, B. Warner, and G. Edwards. 1997. Increases in Fluxes of Greenhouse Gases and Methyl Mercury following Flooding of an Experimental Reservoir. Environmental Science and Technology 31:1334–1344. Available: http://cybrary.fomb.org/FOSL/Research/Greenhouse%20Gases/Kelly%20et%20al%201997-Increases%20in%20Fluxes%20of%20Greenhouse%20Gases%20and%20Methyl%20Mercury%20following%20Flooding%20of%20an%20Experimental%20Reservoir.pdf</a >.

Interstate Technology Regulatory Council. 2023a. Phosphorus-Binding Compounds. From: Strategies for Preventing and Managing Harmful Cyanobacterial Blooms (HCB-1). Available: https://hcb-1.itrcweb.org/phosphorus-binding-compounds/</a >.

Interstate Technology Regulatory Council. 2023b. Copper Algaecides. From: Strategies for Preventing and Managing Harmful Cyanobacterial Blooms (HCB-1). Available: https://hcb-1.itrcweb.org/copper-algaecides/</a >.

Marshall, N. T., H. A. Vanderploeg, and S. R. Chaganti. 2022. Improving Environmental DNA Sensitivity for Dreissenid Mussels by Targeting Tandem Repeat Regions of the Mitochondrial Genome. Water 2022 14(13):2069. Available: https://doi.org/10.3390/w14132069</a >.

Meador, M. R., T. F. Cuffney, and M. E. Gurtz. 1993. Methods for Sampling Fish Communities as part of the National Water Quality Assessment Program. U.S. Geological Survey Open-File Report 93-104. Raleigh, NC.

National Biological Service, U.S. Department of the Interior. 1995. The Instream Flow Incremental Methodology: A Primer for IFIM. Biological Report 29. March. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App02D_BMPs_Plans_Studies/NBS_USDoI_1995_The%20Instream%20Flow%20Incremental%20Methodology1.pdf</a >

New England Interstate Water Pollution Control Commission. 2015. Harmful Algal Bloom Control Methods Synopses. June. Available: https://www.neiwpcc.org/neiwpcc_docs/NEIWPCC_HABControlMethodsSynopses_June2015.pdf</a >.

Ode, P. R., A. B. Fetscher, and L.B. Busse. 2016a. Standard Operating Procedures (SOP) for the Collection of Field Data for Bioassessments of California Wadeable Streams: Benthic Macroinvertebrates, Algae, and Physical Habitat. May. Available: https://www.waterboards.ca.gov/water_issues/programs/swamp/bioassessment/sops.html</a >.

Ode, P. R., A. B. Fetscher, and L.B. Busse. 2016b. Supplemental Guidance for the SWAMP Bioassessment Field Protocol. California State Water Resources Control Board Surface Water Ambient Monitoring Program (SWAMP) Bioassessment SOP-SB-2016-0002. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App02D_BMPs_Plans_Studies/Ode_et_al_2016b_Supplemental%20Guidance%20for%20the%20SWAMP%20Bioassessment%20Field%20Protocol.pdf</a >

PacifiCorp. 2016. Water Quality Effects of an Intake Barrier Curtain to Reduce Algae Concentrations Downstream of Iron Gate Reservoir. Prepared by: Watercourse Engineering, Inc. July. Available: https://www.pacificorp.com/content/dam/pcorp/documents/en/pacificorp/energy/hydro/klamath-river/khsa-implementation/technical-documents/2016-IB-StdyRptF2015(7-29-16).pdf</a >.

Pacific States Marine Fisheries Commission. 2016. Uniform Minimum Protocols and Standards for Watercraft Inspection and Decontamination Programs for Dreissenid Mussels in the Western United States. Leah Elwell and Stephen Phillips, Editors. Available: https://invasivemusselcollaborative.net/wp-content/uploads/2018/11/UMPS-III-7-14-2016.pdf</a >.

Rehn, A. C., R. D. Mazor, and P. R. Ode. 2015. The California Stream Condition Index (CSCI): A New Statewide Biological Scoring Tool for Assessing the Health of Freshwater Streams. SWAMP Technical Memorandum. (SWAMP-TM-2015-0002.) September. Available: https://www.waterboards.ca.gov/water_issues/programs/swamp/bioassessment/docs/csci_tech_memo.pdf</a >.

Rehn, A. C., R. D. Mazor and P. R. Ode. 2018. An Index to Measure the Quality of Physical Habitat in California Wadeable Streams. (SWAMP Technical Memorandum SWAMP-TM-2018-0005.) Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App02D_BMPs_Plans_Studies/Rehn_et_al_2018_An%20Index%20to%20Measure%20the%20Quality%20of%20Physical%20Habitat%20in%20California%20Wadeable%20Streams.pdf</a >

Richter, B. D., M. M. Davis, C. Apse, and C. Konrad. 2011. Short Communication: A Presumptive Standard for Environmental Flow Protection. River Research and Applications. Published online in Wiley Online Library (wileyonlinelibrary.com). DOI: 10.1002/rra.1511. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App02D_BMPs_Plans_Studies/Richter%20et%20al_2011_PresumptiveStandardFlow.pdf</a >

Seelos, M., M. Beutel, C. M. Austin, E. Wilkinson, and C. Leal. 2021. Effects of Hypolimnetic Oxygenation on Fish Tissue Mercury in Reservoirs near the New Almaden Mining District, California, USA. Environmental Pollution 268(2021):115759. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App02D_BMPs_Plans_Studies/Seelos_etal_2021_EffectsHypolimneticOxygenation.pdf</a >

State Water Resources Control Board. 2017. Draft Staff Report for Scientific Peer Review for the Amendment to the Water Quality Control Plan for Inland Surface Waters, Enclosed Bays, and Estuaries of California, Mercury Reservoir Provisions — Mercury TMDL and Implementation Program for Reservoirs. Statewide Mercury Control Program for Reservoirs. California Water Boards. Available: https://www.waterboards.ca.gov/water_issues/programs/mercury/reservoirs/docs/peer_review/02_staff_report_scientific_peer_review.pdf</a >.

State Water Resources Control Board. 2021. Quality Assurance Project Plan—Long-Term Monitoring of Bass Lakes and Reservoirs in California. Version 3. Bioaccumulation Monitoring Program and Surface Water Ambient Monitoring Program. October. Available: https://www.waterboards.ca.gov/water_issues/programs/swamp/docs/2022/bioaccumulationmonitoringprogram-lakes-2021-qapp-final.pdf</a >.

State Water Resources Control Board. 2022. Monitoring and Analysis Plan—Long-term Monitoring of Bass Lakes and Reservoirs in California. Version 1. Bioaccumulation Monitoring Program and Surface Water Ambient Monitoring Program. November. Available: https://www.waterboards.ca.gov/water_issues/programs/swamp/docs/2022/bioaccumulationmonitoringprogram-lakes-2023-monitoringplan.pdf</a >.

U.S. Environmental Protection Agency. 1998. Method 1630: Methyl Mercury in Water by Distillation, Aqueous Ethylation, Purge and Trap, and Cold Vapor Atomic Fluorescence Spectrometry. August. Available: https://www.epa.gov/sites/default/files/2015-08/documents/method_1630_1998.pdf</a >.

Van Vuren, D., M. A. Ordenana, M. C. McGrann, and A. R. Berentsen. 2014. Managing California Ground Squirrels on Levees Using Habitat Modification. Article in Proceedings of the Vertebrate Pest Conference. University of California, Davis. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App02D_BMPs_Plans_Studies/Van-Vuren_et_al_2014_Managing%20CGS%20onLevees%20Using%20Habitat%20Modification.pdf</a >

Yarnell, S. M., G. E. Petts, J. C. Schmidt, A. A. Whipple, E. E. Beller, C. N. Dahm, P. Goodwin, and J. Viers. 2015. Functional Flows in Modified Riverscapes: Hydrographs, Habitats and Opportunities. BioScience 65(10):963–972. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App02D_BMPs_Plans_Studies/Yarnell_et_al_2015_Functional%20Flows%20in%20Modified%20Riverscapes.pdf</a >

Appendix 02D1

Blanco, Cesar. Regional Aquatic Invasive Species Coordinator. U.S. Fish and Wildlife Service, Sacramento, CA. March 8, 2022—phone call to Jim Lecky, Senior Fish Biologist, ICF, Seattle, WA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App02D_BMPs_Plans_Studies/Appendix%202D1/Blanco_pers.comm._2022_Aquatic_Invasive_Species_Coordinator.pdf</a >

Bury, J. A., B. E. Sietman, and B. N. Karns. 2007. Distribution of the Non-Native Viviparid Snails, Bellamya chinensis and Viviparus georgianus, in Minnesota and the First Record of Bellamya japonica from Wisconsin. Journal of Freshwater Ecology 22(4):697–703. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App02D_BMPs_Plans_Studies/Appendix%202D1/Bury_etal_2007_Distribution_Non-Native_Snails.pdf</a >

California Department of Fish and Wildlife. 2022. Aquatic Invasive Species: A Guide to Identifying Threats to California Freshwater Environments. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=78036&inline</a >.

California Division of Boating and Waterways. 2022. Clean, Drain and Dry Boat Cleaning Procedures. Available: https://dbw.parks.ca.gov/?page_id=28993</a >.

Chiu, Y.-W., H.-C. Chen, S.-C. Lee, and C. A. Chen. 2002. Morphometric Analysis of Shell and Operculum Variations in the Viviparid Snail, Cipangopaludina chinensis (Mollusca: Gastropoda), in Taiwan. Zoological Studies 41(3):321–331. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App02D_BMPs_Plans_Studies/Appendix%202D1/Chiu_etal_2002_Morphometric_Analysis.pdf</a >

Cohen, A. N., and J. T. Carlton. 1995. Nonindigenous Aquatic Species in a United States Estuary: A Case Study of the Biological Invasions of the San Francisco Bay and Delta. A Report for the U.S. Fish and Wildlife Service, Washington DC, and the National Sea Grant College Program Connecticut Sea Grant (NOAA Grant Number NA36RG0467). Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App02D_BMPs_Plans_Studies/Appendix%202D1/Cohen_Carlton_1995_Nonindigenous_Aquatic_Estuary.pdf</a >

Fofonoff, P. W., G. M. Ruiz, B. Steves, C. Simkanin, and J. T. Carlton. 2018. National Exotic Marine and Estuarine Species Information System. Search for Chinese mystery snail. Available: https://invasions.si.edu/nemesis/species_summary/70329</a >.

Fox, R. 2005. Invertebrate Anatomy Online. Bellamya japonica, Japanese Mystery Snail. Greenwood, SC: Lander University. Available: http://lanwebs.lander.edu/faculty/rsfox/invertebrates/bellamya.html</a >.

Harried, B., K. Fischer, K. E. Perez, and G. J. Sandland. 2015. Assessing Infection Patterns in Chinese Mystery Snails from Wisconsin, USA Using Field and Laboratory Approaches. Aquatic Invasions 10(2):169–175. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App02D_BMPs_Plans_Studies/Appendix%202D1/Harried_etal_2015_Assessing_Infection_Patterns.pdf</a >

Johnson, P. T. J., J. D. Olden, C. T. Solomon, and M. J. Vander Zanden. 2009. Interactions Among Invaders: Community and Ecosystem Effects of Multiple Invasive Species in an Experimental Aquatic System. Oecologia 159:161–170. Available: http://dx.doi.org/10.1007/s00442-008-1176-x</a >.

Kingsbury, S. E., D. F. McAlpine, Y. Cheng, E. Parker, and L. M. Campbell. 2021. A Review of the Non-Indigenous Mystery Snail, Cipangopaludina chinensis (Viviparidae), in North America, with Emphasis on Occurrence in Canada and the Potential Impact on Indigenous Aquatic Species. Environmental Reviews 29:182–200. Available: http://dx.doi.org/10.1139/er-2020-0064</a >.

Kipp, R. M., A. J. Benson, J. Larson, A. Fusaro, and C. Morningstar. 2022. Cipangopaludina chinensis (Gray, 1834). Nonindigenous Aquatic Species Database. Last updated: January 15, 2020. Gainesville, FL: U.S. Geological Survey. Available: https://nas.er.usgs.gov/queries/FactSheet.aspx?speciesID=1044</a >.

Mackie, G. L. 1999. Introduction of Molluscs through the Import for Live Food. In R. Claudi and J. Leach (eds.), Non-Indigenous Freshwater Organisms: Vectors Biology and Impacts. Boca Raton, FL: Lewis Publishers. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App02D_BMPs_Plans_Studies/Appendix%202D1/Mackie_1999_Introduction_Molluscs.pdf</a >

McAlpine, D. F., D. A. W. Lepitzki, F. W. Schueler, F. J. T. McAlpine, A. Hebda, R. G. Forsyth, A. Nicolai, J. E. Maunder, and R. G. Noseworthy. 2016. Occurrence of the Chinese Mystery Snail, Cipangopaludina chinensis (Gray, 1834) (Mollusca: Viviparidae) in the Saint John River System, New Brunswick, with Review of Status in Atlantic Canada. BioInvasions Records 5(3):149–154. Available: http://dx.doi.org/10.3391/bir.2016.5.3.05</a >.

Oden, J. D., E. R. Larson, and M. C. Mims. 2009. Home-Field Advantage: Native Signal Crayfish (Pacifastacus leniusculus) Out Consume Newly Introduced Crayfishes for Invasive Chinese Mystery Snail (Bellamya chinensis). Aquatic Ecology 43:1073. Available: https://doi.org/10.1007/s10452-009-9244-9</a >.

Olden, J. D., L. Ray, M. C. Mims, and M. C. Horner-Devine. 2013. Filtration Rates of the Non-Native Chinese Mystery Snail (Bellamya chinensis) and Potential Impacts on Microbial Communities. Limnetica 32(1):107–120. Available: https://doi.org/10.23818/limn.32.11</a >.

Solomon, C. T., J. D. Olden, P. T. J. Johnson, R. T. Dillon Jr., and M. J. Vander Zanden. 2010. Distribution and Community-Level Effects of the Chinese Mystery Snail (Bellamya chinensis) in Northern Wisconsin Lakes. Biological Invasions 12:1591–1605. Available: https://doi.org/10.1007/s10530-009-9572-7</a >.

Stephen, B. J., C. R. Allenb, N. M. Chainec, K. A. Frickec, D. M. Haak, M. L. Hellman, R. A. Kill, K. T. Nemec, K. L. Pope, N. A. Smeenk, D. R. Uden, K. M. Unstad, A. E. VanderHam, and A. Wong. 2013. Fecundity of the Chinese Mystery Snail in a Nebraska Reservoir. Journal of Freshwater Ecology 28(3):439–444. Available: http://dx.doi.org/10.1080/02705060.2013.769127</a >.

Twardochleb, L. A., and J. D. Olden. 2016. Non-Native Chinese Mystery Snail (Bellamya chinensis) Supports Consumers in Urban Lake Food Webs. Ecosphere 7(5):e01293. Available: https://doi.org/10.1002/ecs2.1293</a >.

Unstad, K. M., D. R. Uden, C. R. Allen, N. M. Chaine, D. M. Haak, R. A. Kill, K. L. Pope, B. J. Stephen, and A. Wong. 2013. Survival and Behavior of Chinese Mystery Snails (Bellamya chinensis) in Response to Simulated Water Body Drawdowns and Extended Air Exposure. Management of Biological Invasions 4:123–127. Available: http://dx.doi.org/10.3391/mbi.2013.4.2.04</a >.

Waltz, J. 2008. Chinese Mystery Snail (Bellamya chinensis) Review. Seattle, WA: University of Washington. Available: https://depts.washington.edu/oldenlab/wordpress/wp-content/uploads/2013/02/Bellamya-chinensis_Waltz.pdf</a >.

Appendix 04A

Chapter 5, Surface Water Resources

California Department of Water Resources. 2020. Final Environmental Impact Report for Long-Term Operation of the California State Water Project. State Clearinghouse No. 2019049121. Appendix B: 2018 Coordinated Operation Agreement Addendum. Available: https://water.ca.gov/News/Public-Notices/2020/March-2020/Final-EIR-for-SWP-Operations</a >.

Colusa County. 2021. Colusa County Code, Chapter 33 Flood Damage Prevention. Available: https://www.codepublishing.com/CA/ColusaCounty/#!/ColusaCounty33.html#33-1.1</a >.

Colusa County. 2012. Colusa County General Plan. Prepared by De Novo Planning Group. Available: https://www.countyofcolusa.org/137/General-Plan</a >.

Glenn County. 2020. Glenn County General Plan Update: Existing Conditions Report 2020. Prepared by De Novo Planning Group. Available: https://static1.squarespace.com/static/5c8a73469b7d1510bee16785/t/5e556b56c253f84cdc287783/1582656403698/GlennCounty-ECR-Final-Feb2020.pdf</a >.

Glenn County. 2018. Glenn County Code, Chapter 15.540 Flood Plain Management Zone. Available: https://www.countyofglenn.net/sites/default/files/resources/County_Code_Directory/Title%2015.pdf</a >.

Tehama County. 2020. Tehama County Code, Chapter 15.52 Floodplain Management Regulations. https://library.municode.com/ca/tehama_county/codes/code_of_ordinances?nodeId=TIT15BUCO_CH15.52FLMARE</a >.

Tehama County. 2009. Tehama County General Plan Update 2009-2029. Prepared by PMC. Available: https://co.tehama.ca.us/images/stories/planning/2009-2029%20Tehama%20County%20General%20Plan%20r1.pdf</a >.

U.S. Army Corps of Engineers. 1986. Overtopping of Flood Control Levees and Floodwalls. Publication Engineering Technical Letter 1110-2-299. August 22. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App04A_Regulatory/Section4A.1_Surface%20Water%20Resources/USACE_1986_Overtopping%20of%20Flood%20Control%20Levees%20and%20Floodwalls.pdf</a >

U.S. Army Corps of Engineers. 1994. Structural Design of Closure Structures for Local Flood Protection Projects. Publication EM 1110-2-2705. March 31. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App04A_Regulatory/Section4A.1_Surface%20Water%20Resources/USACE_1994_Structural%20Design%20of%20Closure%20Structures%20for%20Local%20Flood%20Protection%20Projects.pdf</a >

U.S. Army Corps of Engineers. 1995. Design of Coastal Revetments, Seawalls, and Bulkheads. Publication EM 1110-2-1614. June 30. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App04A_Regulatory/Section4A.1_Surface%20Water%20Resources/USACE_1995_Design%20of%20Coastal%20Revetments,%20Seawalls,%20and%20Bulkheads.pdf</a >

U.S. Army Corps of Engineers. 1997. Design Guidance on Levees. Publication ETL 1110-2-555. November 30.

U.S. Army Corps of Engineers. 1998. Conduits, Culverts, and Pipes. Publication EM 1110-2-2902. March 31.

U.S. Army Corps of Engineers. 1999a. Guidelines on Ground Improvement for Structures and Facilities. Publication ETL 1110-1-185. February 1. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App04A_Regulatory/Section4A.1_Surface%20Water%20Resources/USACE_1999a_Guidelines%20on%20Ground%20Improvement%20for%20Structures%20and%20Facilities.pdf</a >

U.S. Army Corps of Engineers. 1999b. Engineering and Design for Civil Works Projects. Publication ER 1110-2-1150. August 31. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App04A_Regulatory/Section4A.1_Surface%20Water%20Resources/USACE_1999b_Engineering%20and%20Design%20for%20Civil%20Works%20Projects.pdf</a >

U.S. Army Corps of Engineers. 2000. Design and Construction of Levees. Publication EM 1110-2-1913. April 30. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App04A_Regulatory/Section4A.1_Surface%20Water%20Resources/USACE_2000_Design%20and%20Construction%20of%20Levees.pdf</a >

U.S. Army Corps of Engineers. 2001. Geotechnical Investigations. Publication EM 1110-1-1804. January 1. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App04A_Regulatory/Section4A.1_Surface%20Water%20Resources/USACE_2001_Geotechnical%20Investigations.%20Publication%20EM%201110-1-1804.pdf</a >

U.S. Army Corps of Engineers. 2003a. Recommendations for Seepage Design Criteria, Evaluation and Design Practices. Sacramento District. July 15. http://www.safca.org/documents/2003%20Levee%20Seepage%20Task%20Force%20Report-CESPK.pdf</a >.

U.S. Army Corps of Engineers. 2003b. Slope Stability. Engineer Manual. Publication EM 1110-2-1902. October 31. https://www.publications.usace.army.mil/Portals/76/Publications/EngineerManuals/EM_1110-2-1902.pdf</a >.

U.S. Army Corps of Engineers. 2004. Geotechnical Levee Practice. Publication SOP EDG-03. June 28.

U.S. Army Corps of Engineers. 2005. Engineering and Design—Design Guidance for Levee Underseepage. Technical Letter ETL 1110-2-569. May 1. http://www.geotechnicalinfo.com/usace_design_guidance_for_levee_underseepage.pdf</a >.

U.S. Army Corps of Engineers. 2006. Quality Management. Publication ER 1110-1-12. September 30. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App04A_Regulatory/Section4A.1_Surface%20Water%20Resources/USACE_2006_Quality%20Management.%20Publication%20ER%201110-1-12.%20(1).pdf</a >

U.S. Army Corps of Engineers. 2009. Engineering Technical Letter 1110-2-571. Guidelines for Landscape Planting and Vegetation Management at Levees, Floodwalls, Embankment Dams, and Appurtenant Structures. Washington, DC. April 10. ftp://ftp.usace.army.mil/pub/rmc/Holden/SPK%20Vegetation%20Variance%20Request%202011-01-24%20For%20FTP/ETL%201110-2-571_10%20April%202009.pdf</a >.

Yolo County. 2009. 2030 Countywide General Plan. Woodland, CA. November 10. https://www.yolocounty.org/government/general-government-departments/county-administrator/general-plan/adopted-general-plan</a >.

Yolo County. 2020. Yolo County Code, Chapter 4 Flood Protection. https://codelibrary.amlegal.com/codes/yolocounty/latest/yolo/0-0-0-30507</a >.

Chapter 6, Surface Water Quality

California Cyanobacteria and Harmful Algal Bloom Subcommittee. 2020. Benthic Algal Mat Signage Design. Available: https://mywaterquality.ca.gov/habs/resources/docs/benthic_signage_procedure_20200430.pdf</a >.

California Office of Environmental Health Hazard Assessment. 2021. Notice of Availability of Notification Level Recommendations for Four Cyanotoxins in Drinking Water. Available: https://oehha.ca.gov/water/crnr/notice-availability-notification-level-recommendations-four-cyanotoxins-drinking-water</a >.

California Water Quality Monitoring Council. 2021. California Voluntary Guidance for Response to HABs in Recreational Inland Waters. Cyanobacteria and Harmful Algal Bloom Network. Available: https://mywaterquality.ca.gov/habs/resources/habs_response.html</a >.

Central Valley Regional Water Quality Control Board. 2002. Upper Sacramento River TMDL for Cadmium, Copper and Zinc Final Report. Available: https://www.waterboards.ca.gov/about_us/performance_report_1516/plan_assess/docs/fy1314/11112_r5_sacramentoriver_cadmiumcopperzinc.pdf</a >.

Central Valley Regional Water Quality Control Board. 2006. Amendment to the Water Quality Control Plan for the Sacramento River and San Joaquin River Basins for the Control of Diazinon and Chlorpyrifos Runoff into the Sacramento–San Joaquin Delta. Available: https://www.waterboards.ca.gov/centralvalley/board_decisions/adopted_orders/resolutions/r5-2006-0061.pdf</a >.

Central Valley Regional Water Quality Control Board. 2010. American River Watershed Methylmercury TMDL and Mercury Control Program Information Sheet. Available: https://data.sacriver.org/assets/5ffd2763a1b5d1a3078c4bd991651244/application/pdf/2010oct_arwatershed_merctmdl_info.pdf</a >.

Central Valley Regional Water Quality Control Board. 2011. Amendments to the Water Quality Control Plan for the Sacramento River and San Joaquin River Basins for the Control of Methylmercury and Total Mercury in the Sacramento–San Joaquin River Delta Estuary (Attachment 1 to Resolution No. R5-2010-0043). Available: https://www.waterboards.ca.gov/centralvalley/water_issues/tmdl/central_valley_projects/delta_hg/2011_1020_deltahg_bpa.pdf</a >.

Central Valley Regional Water Quality Control Board. 2019. The Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board, Central Valley Region: The Sacramento River Basin and the San Joaquin River Basin. Fifth Edition. Revised February 2019. Available: https://www.waterboards.ca.gov/centralvalley/water_issues/basin_plans/sacsjr_201902.pdf</a >.

Colusa County. 2012a. Chapter 5. Conservation Element. From: Colusa County General Plan. Prepared by De Novo Planning Group. Adopted July 31, 2012. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App04A_Regulatory/Section4A.2_SurfaceWaterQuality/Colusa%20County_2012a_Chapter%205.%20Conservation%20Element.pdf</a >

Colusa County. 2012b. Chapter 11. Public Services and Facilities Element. From: Colusa County General Plan. Prepared by De Novo Planning Group. Adopted July 31, 2012. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App04A_Regulatory/Section4A.2_SurfaceWaterQuality/Colusa%20County_2012b_Chapter%2011.%20Public%20Services%20and%20Facilities%20Element.pdf</a >

County of Yolo. 2009. 2030 Countywide General Plan. Planning and Public Works Department, Woodland, CA. Adopted November 10, 2009. Resolution No. 09-189. Available: https://www.yolocounty.org/government/general-government-departments/county-administrator/general-plan/adopted-general-plan</a >.

State of California. 2017. Statewide Mercury Control Program for Reservoirs Summary. Available: https://www.waterboards.ca.gov/water_issues/programs/mercury/reservoirs/docs/summary_april_2017.pdf</a >.

State Water Resources Control Board. 2018. Water Quality Control Plan for the San Francisco/Sacramento–San Joaquin Delta Estuary. December 12. Available: https://www.waterboards.ca.gov/plans_policies/docs/2018wqcp.pdf</a >.

State Water Resources Control Board. 2019. Cyanobacteria and Cyanotoxins in Drinking Water. Available: https://www.waterboards.ca.gov/drinking_water/programs/habs/</a >.

Tehama County. 2009. Tehama County General Plan Update 2009 – 2029. Prepared by PMC. March. Available: https://co.tehama.ca.us/images/stories/planning/2009-2029%20Tehama%20County%20General%20Plan%20r1.pdf</a >.

U.S. Environmental Protection Agency. 2019. Recommended Human Health Recreational Ambient Water Quality Criteria or Swimming Advisories for Microcystins and Cylindrospermopsin. EPA 822-R-19-001. Available: https://www.epa.gov/sites/production/files/2019-05/documents/hh-rec-criteria-habs-document-2019.pdf</a >.

U.S. Environmental Protection Agency. 2020. EPA Drinking Water Health Advisories for Cyanotoxins. Available: https://www.epa.gov/cyanohabs/epa-drinking-water-health-advisories-cyanotoxins</a >.

Yolo County. 2004. Yolo County Stormwater Management Program (SWMP) Planning Document. March 2003; revised October 2004. Woodland, CA. Prepared by Larry Walker Associates. Available: https://www.yolocounty.org/home/showdocument?id=2567</a >.

Chapter 7, Fluvial Geomorphology

None.

Chapter 8, Groundwater Resources

Colusa County. 2012a. Chapter 5, Conservation Element. From: Colusa County General Plan. Prepared by De Novo Planning Group. Adopted July 31, 2012. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App04A_Regulatory/Section4A.4_Groundwater%20Resources/Colusa%20County_2012a_Chapter%205.%20Conservation%20Element.pdf</a >

Colusa County. 2012b. Chapter 11. Public Services and Facilities Element. From: Colusa County General Plan. Prepared by De Novo Planning Group. Adopted July 31, 2012. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App04A_Regulatory/Section4A.4_Groundwater%20Resources/Colusa%20County_2012b_Chapter%2011.%20Public%20Services%20and%20Facilities%20Element.pdf</a >

Tehama County. 2009. Tehama County General Plan. Prepared by PMC. March. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App04A_Regulatory/Section4A.4_Groundwater%20Resources/Tehama_County_2009_General_Plan.pdf</a >

Chapter 9, Vegetation and Wetland Resources

California Department of Fish and Game and Yolo Basin Foundation. 2008. Yolo Bypass Wildlife Area Land Management Plan. June. Napa, CA. Prepared by EDAW, Inc, Sacramento, CA. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=84924&inline</a >.

Colusa County. 2012. Chapter 5, Conservation Element. From: Colusa County General Plan. Prepared by De Novo Planning Group. Adopted July 31, 2012. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App04A_Regulatory/Section4A.9_Vegetation%20and%20Wetland%20Resources/Colusa%20County_2012a_Chapter%205.%20Conservation%20Element.pdf</a >

National Invasive Species Council. 2016. 2016–2018 National Invasive Species Management Plan. Washington, DC. Available: 2016-2018 NISC Management Plan (doi.gov). Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App04A_Regulatory/Section4A.9_Vegetation%20and%20Wetland%20Resources/NISC_2016_2016%E2%80%932018%20National%20Invasive%20Species%20Management%20Plan.pdf</a >

State Water Resources Control Board 2019. State Wetland Definition and Procedures for Discharges of Dredged or Fill Material to Waters of the State. Adopted April 2, 2019. Available: https://www.waterboards.ca.gov/water_issues/programs/cwa401/docs/2021/procedures.pdf</a >.

Tehama County. 2009. Tehama County General Plan Update, 2009-2029. Adopted: March 2009. Red Bluff, CA. Available: https://co.tehama.ca.us/images/stories/planning/2009-2029%20Tehama%20County%20General%20Plan%20r1.pdf</a >.

Yolo County. 2009. 2030 Countywide General Plan. Adopted: November 10, 2009. Woodland, CA. Available: https://www.yolocounty.org/government/general-government-departments/county-administrator/general-plan/adopted-general-plan</a >.

Yolo Habitat Conservancy. 2020. Yolo Habitat Conservancy. Last revised: 2020. Available: https://www.yolohabitatconservancy.org/</a >

Chapter 10, Wildlife Resources

Colusa County. 2012. Chapter 5, Conservation Element. From: Colusa County General Plan. Prepared by De Novo Planning Group. Adopted July 31, 2012. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App04A_Regulatory/Section4A.6_Wildlife%20Resources/Colusa%20County_2012a_Chapter%205.%20Conservation%20Element.pdf</a >

Yolo Habitat Conservancy. 2020. Yolo Habitat Conservancy. Last revised: 2020. Available: https://www.yolohabitatconservancy.org/</a >

Chapter 11, Aquatic Biological Resources

Andreen, L. A. and S. C. Jones. 2008. The Clean Water Act, a Blueprint for Reform. Center for Progressive Reform, CPR Shite Paper #802 (July 2008). The University of Alabama School of Law. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App04A_Regulatory/Section4A.7_Aquatic%20Biological%20Resources/Andreen_Jones_2008_The%20Clean%20Water%20Act,%20a%20Blueprint%20for%20Reform.PDF</a >

Bork, K. S., J.F. Krovoza, J. V. Katz, P. B. Moyle. 2012. The Rebirth of California Fish and Game Code Section 5937: Water for Fish. UC Davis Law Review, Volume 45. Available: https://lawreview.law.ucdavis.edu/issues/45/3/Topic/45-3_Bork.pdf</a >.

Colusa County. 2012. Colusa County General Plan. Prepared by De Novo Planning Group. Adopted July 31, 2012. Available: https://www.countyofcolusa.org/137/General-Plan</a >.

National Marine Fisheries Service. 2014. Recovery Plan for the Evolutionarily Significant Units of Sacramento River Winter-Run Chinook Salmon and Central Valley Spring-Run Chinook Salmon and the Distinct Population Segment of California Central Valley Steelhead. California Central Valley Area Office. July 2014. https://www.fisheries.noaa.gov/resource/document/recovery-plan-evolutionarily-significant-units-sacramento-river-winter-run

National Marine Fisheries Service. 2018. Recovery Plan for the Southern Distinct Population Segment of North American Green Sturgeon (Acipenser medirostris). Sacramento, CA. Available at: < https://www.fisheries.noaa.gov/resource/document/final-recovery-plan-southern-distinct-population-segment-north-american-green</a >>

National Marine Fisheries Service. 2019. Biological Opinion for the Biological Opinions on the Reinitiation of Consultation on the Coordinated Long-Term Operation of the Central Valley Project and State Water Project. West Coast Region.

U.S. Fish and Wildlife Service. 1996. Sacramento–San Joaquin Delta Native Fishes Recovery Plan. U.S. Fish and Wildlife Service, Portland, Oregon Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App04A_Regulatory/Section4A.7_Aquatic%20Biological%20Resources/USFWS_1996_Sacramento-San%20Joaquin%20Delta%20Native%20Fishes%20Recovery%20Plan.pdf</a >

U.S. Fish and Wildlife Service. 2019. Biological Opinion for the Biological Opinions on the Reinitiation of Consultation on the Coordinated Long-Term Operation of the Central Valley Project and State Water Project. Sacramento, CA.

Chapter 12, Geology and Soils

Colusa County. 2012. General Plan, Conservation Element. Prepared by De Novo Planning Group. Adopted July 31, 2012. Available: https://countyofcolusa.org/DocumentCenter/View/2722/Conservation-Element_Colusa_Final?bidId=</a >.

Glenn County. 2020. Glenn County General Plan Update, Existing Conditions Report. Glenn County, California. Prepared by De Novo Planning Group, February 2020. Available: https://static1.squarespace.com/static/5c8a73469b7d1510bee16785/t/5e556b56c253f84cdc287783/1582656403698/GlennCounty-ECR-Final-Feb2020.pdf</a >.

Chapter 13, Minerals

California State Mining and Geology Board. n.d. Guidelines for classification and designation of mineral lands. Available at: https://www.conservation.ca.gov/smgb/Guidelines/ and https://www.conservation.ca.gov/smgb/Guidelines/Documents/ClassDesig.pdf</a >.

Colusa County. 2012. Colusa County General Plan. Prepared by De Novo Planning Group. Adopted July 31, 2012. Available: https://www.countyofcolusa.org/137/General-Plan</a >.

Executive Office of the President. 2017. A federal strategy to ensure secure and reliable supplies of critical minerals. Federal Register, v. 82, n0. 246, p. 60835-60837, Accessed October 2, 2020; https://federalregister.gov/documents/2017/12/26/2017-27899/a-federal-strategy-to-ensure-secure-and-reliable-supplies-of-critical-minerals</a >.

U.S. Department of the Interior. 2017. Critical mineral independence and security. U.S. Department of the Interior, Order No. 3359, Accessed October 2, 2020; https://www.doi.gov/sites/doi.gov/files/uploads/so_criticalminerals.pdf</a >.

Chapter 14, Land Use

Colusa County. 2012. Colusa County General Plan. Prepared by De Novo Planning Group. Adopted July 31, 2012. Available: https://www.countyofcolusa.org/137/General-Plan</a >.

County of Yolo. 2014. Yolo County Community Services Department, Zoning Code (Title 8 of the Yolo County Code). Adopted July 2014. Available: https://www.yolocounty.org/home/showpublisheddocument?id=65510</a >.

Chapter 15, Agriculture and Forestry Resources

Colusa County. 2012. 2030 General Plan: Agriculture Element. Available: https://www.countyofcolusa.org/DocumentCenter/View/2719</a >.

Glenn County. 2020. Glenn County General Plan Update: Existing Conditions Report. Prepared by: De Novo Planning Group. Prepared for: Glenn County. Available: https://static1.squarespace.com/static/5c8a73469b7d1510bee16785/t/5e556b56c253f84cdc287783/1582656403698/GlennCounty-ECR-Final-Feb2020.pdf</a >.

Yolo County. 2009. 2030 Countywide General Plan: Agriculture and Economic Development Element. Available: https://www.yolocounty.org/government/general-government-departments/county-administrator/general-plan/adopted-general-plan</a >.

Chapter 16, Recreation Resources

California Department of Parks and Recreation’s Division of Boating and Waterways. 2017. ABCs of the California Boating Law. Sacramento, CA. Available: https://dbw.parks.ca.gov/pages/28702/files/DBW_ABCs_of_Boating_2017.pdf</a >.

Colusa County. 2012. Colusa County General Plan. Prepared by De Novo Planning Group. Adopted July 31, 2012. Available: https://www.countyofcolusa.org/137/General-Plan</a >.

County of Yolo. 2009. Yolo County 2030 Countywide General Plan. November 10. Woodland, CA. 24 Available: http://www.yolocounty.org/Index.aspx?page=1965</a >.

Glenn County. 1993. Glenn County General Plan, Policy Plan. Adopted June 15, 1993. Glenn County, CA. Available: https://www.countyofglenn.net/sites/default/files/images/4%20EIR%20Glenn%20County%20General%20Plan%20Vol.%20IV%20Reduced%20Size.pdf</a >

Shasta-Trinity National Forest. 2014. Management Guide, Shasta and Trinity Units. Available at: https://www.fs.usda.gov/Internet/FSE_DOCUMENTS/stelprd3790610.pdf</a >.

Chapter 17, Energy

California Energy Commission 2019. Building Energy Efficiency Standards for Residential and Nonresidential Buildings for the 2019 Building Energy Efficiency Standards Title 24, Part 6, and Associated Administrative Regulations, California Energy Commission, 2019. Available: https://www.energy.ca.gov/programs-and-topics/programs/building-energy-efficiency-standards/2019-building-energy-efficiency</a >

Colusa County. 2012. Colusa County 2030 General Plan Public Services and Facilities Element. County of Colusa, California. Adopted July 21, 2012. Available: https://www.countyofcolusa.org/DocumentCenter/View/2728</a >.

Glenn County. 1993. Glenn County General Plan, Policy Plan. Environmental Impact Report Glenn County General Plan Volume IV Adopted. June 15, 1993. Glenn County, Available: https://www.countyofglenn.net/sites/default/files/images/4%20EIR%20Glenn%20County%20General%20Plan%20Vol.%20IV%20Reduced%20Size.pdf</a >.

Chapter 18, Navigation, Transportation, and Traffic

Colusa County. 2012. Colusa County General Plan. Prepared by De Novo Planning Group. Adopted July 31, 2012. Available: https://www.countyofcolusa.org/137/General-Plan</a >.

Colusa County. 2019. 2018 Colusa County Regional Transportation Plan Update. June. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%201/Ch18_Nav_Trans_Traffic/Colusa_2019_2018%20Colusa%20County%20Regional%20Transportation%20Plan%20Update.pdf</a >

Glenn County. 2019. Glenn County Active Transportation Plan. Adopted June 20, 2019. Available: https://www.countyofglenn.net/sites/default/files/Glenn%20County%20ATP%20Final%20Adopted%202019-06-20.pdf</a >

Glenn County. 2020. Glenn County General Plan Update Existing Conditions Report. Prepared by De Novo Planning Group. Available: https://static1.squarespace.com/static/5c8a73469b7d1510bee16785/t/5e556b56c253f84cdc287783/1582656403698/GlennCounty-ECR-Final-Feb2020.pdf</a >.

Chapter 19, Noise

California Office of Noise Control. 1977. Model Community Noise Control Ordinance.

Colusa County. 2012. Colusa County General Plan. Prepared by De Novo Planning Group. Adopted July 31, 2012. Available: https://www.countyofcolusa.org/137/General-Plan</a >.

Federal Transit Administration. 2018. Transit Noise and Vibration Impact Assessment Manual. September. Available: https://www.transit.dot.gov/sites/fta.dot.gov/files/docs/research-innovation/118131/transit-noise-and-vibration-impact-assessment-manual-fta-report-no-0123_0.pdf</a >.

State of California. 2017. State of California General Plan Guidelines. Available: https://opr.ca.gov/docs/OPR_COMPLETE_7.31.17.pdf</a >.

U.S. Environmental Protection Agency. 1974. Information on Levels of Environmental Noise Requisite to Protect Public Health and Welfare with an Adequate Margin of Safety. March. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App04A_Regulatory/Section4A.15_Noise/USEPA_1974_Information%20on%20Levels%20of%20Environmental%20Noise%20Requisite%20to%20Protect%20Public%20Health%20and%20Welfare%20with%20an%20Adequate%20Margin%20of%20Safety.pdf</a >

Chapter 20, Air Quality

California Air Resources Board. 2000. Risk Reduction Plan to Reduce Particulate Matter Emissions from Diesel-Fueled Engines and Vehicles. October. Available: https://ww2.arb.ca.gov/sites/default/files/classic//diesel/documents/rrpfinal.pdf</a >.

California Air Resources Board. 2016. Ambient Air Quality Standards. Last revised: May 4, 2016. Available: http://www.arb.ca.gov/research/aaqs/aaqs2.pdf</a >.

Colusa County. 2012. Colusa County General Plan. Available: http://www.countyofcolusageneralplan.org/sites/default/files/Colusa_County_General_Plan_adoptedJuly2012.pdf</a >.

Colusa County Air Pollution Control District. 2002. Rules and Regulations. Available: https://countyofcolusa.org/836/Rules-and-Regulations</a >. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App04A_Regulatory/Section4A.16_AirQuality/Colusa%20County%20Air%20Pollution%20Control%20District%202002.pdf</a >

Glenn County Air Pollution Control District. 2010. Regulations of the Air Pollution Control District of Glenn County. Available: https://www.countyofglenn.net/sites/default/files/Agriculture/AP%20Regs%20Book%201%202010update.pdf</a >.

Tehama County. 2009. Tehama County General Plan. Available: https://www.co.tehama.ca.us/images/stories/planning/2009-2029%20Tehama%20County%20General%20Plan%20r1.pdf</a >.

Tehama County Air Pollution Control District. 2015. Air Quality Planning & Permitting Handbook Guidelines for Assessing Air Quality Impacts. April. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App04A_Regulatory/Section4A.16_AirQuality/Tehama_County_Air_Pollution_Control_District_2022_CurrentRules.pdf</a >

Tehama County Air Pollution Control District. 2022. Current Rules Regulation IV – Provisions. Available: https://www.tehcoapcd.net/wp-content/uploads/2022/05/REGULATION-IV-In-Progress-March-2022.pdf</a >.

U.S. Environmental Protection Agency. 2020. Basic Information About Air Quality SIPs. Last Revised: August 3, 2020. Available: https://www.epa.gov/sips/basic-information-air-quality-sips</a >.

Yolo-Solano Air Quality Management District. 2007. Handbook for Assessing and Mitigating Air Quality Impacts. Available: http://www.ysaqmd.org/wp-content/uploads/Planning/CEQAHandbook2007.pdf</a >.

Chapter 21, Greenhouse Gas Emissions

Ledbetter, Ian. Glenn County Air Pollution Control District. October 9, 2021—phone call with ICF regarding air quality and greenhouse gas emissions thresholds for CEQA purposes.

Ryan, Casey. Colusa County Air Pollution Control District. October 14, 2021 — phone call with ICF regarding air quality and greenhouse gas emissions thresholds for CEQA purposes.

Tehama County. 2009. Tehama County General Plan. Available: https://www.co.tehama.ca.us/images/stories/planning/2009-2029%20Tehama%20County%20General%20Plan%20r1.pdf</a >.

Tehama County Air Pollution Control District. 2015. Air Quality Planning & Permitting Handbook – Guidelines for Assessing Air Quality Impacts. Available: https://tehcoapcd.net/PDF/CEQA%20Handbook%20Mar%202015%20Final.pdf</a >.

Yolo County. 2009. 2030 Countywide General Plan. Available: https://www.yolocounty.org/home/showdocument?id=14457</a >.

Yolo-Solano Air Quality Management District. 2007. Handbook for Assessing and Mitigating Air Quality Impacts. Available: http://www.ysaqmd.org/wp-content/uploads/Planning/CEQAHandbook2007.pdf</a >.

Chapter 22, Cultural Resources

Colusa County. 2012. Colusa County General Plan. Conservation Element. Adopted July 31. Prepared by De Novo Planning Group. Available: https://www.countyofcolusa.org/137/General-Plan</a >.

County of Yolo. 2009. 2030 Countywide General Plan. Adopted November 10, 2009. Available: https://www.yolocounty.org/government/general-government-departments/county-administrator/general-plan/adopted-general-plan</a >.

Tehama County. 2009. General Plan. Open Space and Conservation Element. Prepared by PMC. March. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App04A_Regulatory/Section4A.18_Cultural%20Resources/Tehama%20County_2009_General%20Plan.%20Open%20Space%20and%20Conservation%20Element.pdf</a >

Chapter 23, Tribal Cultural Resources

Butte County. 2021. General Plan Setting and Trends. Chapter 9, Cultural Resources. Available: https://www.buttecounty.net/367/General-Plan-2040-Update</a >.

Butte County. 2023. Conservation and Open Space Element. Available: https://www.buttecounty.net/367/General-Plan-2040-Update</a >.

Colusa County. 2012. Colusa County General Plan. Conservation Element. Adopted July 31. Prepared by De Novo Planning Group. Available: https://www.countyofcolusa.org/137/General-Plan</a >.

Sacramento County. 2017. Sacramento County General Plan Conservation Element. Available: https://planning.saccounty.gov/LandUseRegulationDocuments/Documents/General-Plan/Conservation Element – Amended 09-26-17.pdf</a >

Shasta County. 2004a. Shasta County General Plan As Amended Through September 2004. Available: https://www.shastacounty.gov/planning/page/general-plan</a >.

Shasta County. 2004b. Shasta County General Plan Heritage Resource Element. Available: https://www.shastacounty.gov/planning/page/general-plan</a >.

Sutter County. 2011. Sutter County General Plan. Available: https://www.suttercounty.org/government/county-departments/development-services/planning-services/general-plan</a >.

Tehama County. 2009. General Plan. Open Space and Conservation Element. Prepared by PMC. March. Available: https://www.co.tehama.ca.us/images/stories/planning/2009-2029%20Tehama%20County%20General%20Plan%20r1.pdf</a >

Yuba County. 2011. General Plan, Natural Resource Element. Available: https://www.yuba.org/departments/community_development/planning_department/general_plan.php</a >.

Chapter 24, Visual Resources

California Department of Transportation. 2019. List of Eligible and Officially Designated State Scenic Highways. Available https://dot.ca.gov/programs/design/lap-landscape-architecture-and-community-livability/lap-liv-i-scenic-highways</a >. Last updated: July 2019.

Colusa County. 2012. Colusa County General Plan. Adopted: July 31, 2012. Colusa County, CA. Available: https://www.countyofcolusa.org/137/General-Plan</a >.

Glenn County. 1993. Glenn County General Plan, Policy Plan. Adopted. June 15, 1993. Glenn County, CA. Available: https://www.countyofglenn.net/sites/default/files/images/4%20EIR%20Glenn%20County%20General%20Plan%20Vol.%20IV%20Reduced%20Size.pdf</a >.

Chapter 25, Population and Housing

California Department of Housing and Community Development. 2020. Regional Housing Needs Allocation and Housing Elements Website. Available: https://www.hcd.ca.gov/community-development/housing-element/index.shtml</a >

Chapter 26, Public Services and Utilities

California Integrated Waste Management Board. 2009. Tiered Regulatory Placement Criteria. Available: https://calrecycle.ca.gov/lea/regs/tiered/tierchart/</a >.

Colusa County. 2012. Colusa County General Plan. Prepared by De Novo Planning Group. Adopted July 31, 2012. Available: https://www.countyofcolusa.org/137/General-Plan</a >.

Chapter 27, Public Health and Environmental Hazards

California Department of Forestry and Fire Protection. May 2007. California’s Fire Hazard Severity Zones.

California Office of Environmental Health Hazard Assessment. 2017. A Guide to Eating Fish from San Luis Reservoir (Merced County). Available: https://oehha.ca.gov/media/downloads/advisories/sanluisreservoirposter102417.pdf</a >.

California Office of Environmental Health Hazard Assessment.2018a. A Guide to Eating Fish from the Central and South Delta. Available: https://oehha.ca.gov/media/downloads/advisories/deltacentralsouthposter082418.pdf</a >.

California Office of Environmental Health Hazard Assessment.2018b. A Guide to Eating Fish from Shasta Lake. Available: https://oehha.ca.gov/media/downloads/advisories/shastalakeposter.pdf</a >. Copyright protected. See introduction for more information.

California Office of Environmental Health Hazard Assessment. 2018c. A Guide to Eating American Shad, Chinook Salmon, Steelhead Trout, Striped Bass, and White Sturgeon in California Rivers, Estuaries, and Coastal Waters. https://oehha.ca.gov/media/downloads/advisories/anadromousposter070218.pdf</a >.

California Office of Environmental Health Hazard Assessment. 2018d. A Guide to Eating Fish from Lake Oroville (Butte County). Available: https://oehha.ca.gov/media/downloads/advisories/lakeorovilleposter.pdf</a >.

California Office of Environmental Health Hazard Assessment. 2018e. A Guide to Eating Fish from the Lower Feather River (Butte, Sutter, and Yuba Counties). Available: https://oehha.ca.gov/media/downloads/advisories/posterlowerfeatherriver060618.pdf</a >.

California Office of Environmental Health Hazard Assessment. 2018f. A Guide to Eating Fish from Folsom Lake (Sacramento, El Dorado, and Placer Counties). Available: https://oehha.ca.gov/media/downloads/advisories/fishadvisoryfolsomlakeposterenglish.pdf</a >.

California Office of Environmental Health Hazard Assessment. 2018g. A Guide to Eating Fish from the Lower American River (Sacramento County). Available: https://oehha.ca.gov/media/downloads/advisories/loamericanrvposter042018.pdf</a >.

California Office of Environmental Health Hazard Assessment. 2020a. A Guide to Eating Fish from the Sacramento River and Northern Delta. Updated May 2020. Available: https://oehha.ca.gov/media/downloads/advisories/sacramentorvndeltaposterenglish.pdf</a >.

California Office of Environmental Health Hazard Assessment. 2020b. How to Follow Advisories. Available: https://oehha.ca.gov/fish/how-follow-advisories</a >.

Colusa County. 2012. Colusa County General Plan, Safety Element. Available: https://www.countyofcolusa.org/137/General-Plan</a >.

Colusa Mosquito Abatement District. n.d. About Us. Available: https://colusamosquitoabatementdistrict.com/services.html</a >.

Glenn County. 2020. Existing Conditions Report, Public Safety Element. Available: https://icfonline.sharepoint.com/sites/EP/SitesProgram/Admin%20Draft%20EIREIS/_Resources/General%20Plans/Glenn%20County%20General%20Plan/GlennCounty-ECR-Final-Feb2020.pdf?CT=1604007863107&OR=ItemsView</a >.

Glenn County Mosquito and Vector Control. 2020. About the District. Available: https://glennmosquito.specialdistrict.org/about-us</a >.

Sacramento–Yolo Mosquito and Vector Control District. 2018. Integrated Pest Management. Available: https://www.fightthebite.net/programs/integrated-pest-management/</a >.

Tehama County. 2018. Tehama County General Plan Safety Element 2018 Update. Available: https://www.co.tehama.ca.us/images/stories/planning/General_Plan/Element_Amendment_Adopted_Version_12-18-18.pdf</a >.

Yolo County. 2009. County of Yolo 2030 Countywide General Plan. Pages 24-26. Available: https://www.yolocounty.org/home/showdocument?id=14463</a >.

Chapter 28, Climate Change

Bureau of Reclamation. 2016. SECURE Water Act Section 9503(c)—Reclamation Climate Change and Water 2016. Available at: https://www.usbr.gov/climate/secure/docs/2016secure/2016SECUREReport.pdf</a >.

California Department of Water Resources. 2008. Managing an Uncertain Future: Climate Adaptation Strategies for Water. Available at: https://www.scc.ca.gov/webmaster/ftp/pdf/climate_change/water_strategies.pdf</a >.

California Department of Water Resources. 2017. Central Valley Flood Protection Plan. Available at: https://water.ca.gov/-/media/DWR-Website/Web-Pages/Programs/Flood-Management/Flood-Planning-and-Studies/Central-Valley-Flood-Protection-Plan/Files/2017-CVFPP-Update-FINAL_a_y19.pdf</a >.

California Department of Water Resources. 2018. California Water Plan Update. Available at: https://water.ca.gov/Programs/California-Water-Plan/Update-2018</a >.

State of California. 2018. Safeguarding California. Available at: https://resources.ca.gov/CNRALegacyFiles/docs/climate/safeguarding/update2018/safeguarding-california-plan-2018-update.pdf</a >.

U.S. Army Corps of Engineers. 2014. Climate Change Adaptation Plan and Report. Available at: https://www.usace.army.mil/portals/2/docs/sustainability/performance_plans/2014_usace_climate_change_adaptation_plan.pdf</a >.

U.S. Department of the Interior. 2020. U.S. Department of the Interior WaterSMART (Sustain and Manage America’s Resources for Tomorrow). Available at: https://www.usbr.gov/watersmart/</a >.

U.S. Fish and Wildlife Service. 2010. Rising to the Urgent Challenge: Strategic Plan for Responding to Accelerating Climate Change. Available at: https://digitalmedia.fws.gov/digital/collection/document/id/1783/</a >.

U.S. Geological Survey. 2009. Climate Change and Water Resources Management: A Federal Perspective. Available at: https://pubs.usgs.gov/circ/1331/Circ1331.pdf</a >.

U.S. Geological Survey. 2010. Water—The Nation’s Fundamental Climate Issue: A White Paper on the U.S. Geological Survey Role and Capabilities. Available at: https://pubs.usgs.gov/circ/1347/pdf/circ-1347.pdf</a >.

Chapter 29, Indian Trust Assets

No references.

Chapter 30, Environmental Justice and Socioeconomics

Colusa County. 2012. Chapter 6. Economic Development Element. From: Colusa County General Plan. Prepared by De Novo Planning Group. Adopted July 31, 2012. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App04A_Regulatory/Section4A.26_EnvJustice_Socioecon/Colusa%20County_2012_Chapter%206.%20Economic%20Development%20Element.pdf</a >

Congressional Research Service. n.d. Housing and Community Development Act of 1974 Bill Summary. Available: https://www.congress.gov/bill/93rd-congress/senate-bill/3066#:~:text=Housing%20and%20Community%20Development%20Act%20of%201974%20%2D%20Title%20I%3A%20Community,help%20finance%20Community%20Development%20Programs</a >.

Council on Environmental Quality. 1997. Environmental Justice: Guidance under the National Environmental Policy Act. Available: https://www.epa.gov/sites/production/files/2015-02/documents/ej_guidance_nepa_ceq1297.pdf</a >.

U.S. Department of the Interior. 1995. Environmental Compliance Memorandum No. ECM95-3. Available: https://www.doi.gov/sites/doi.gov/files/uploads/note_to_reviewers-ecms_50_series_08_20_2018.pdf</a >.

Appendix 05A

California Department of Water Resources, DSM2. Site accessed December 12, 2022. URL = https://water.ca.gov/Library/Modeling-and-Analysis/Bay-Delta-Region-models-and-tools/Delta-Simulation-Model-II</a >.

Draper, A.J., Munévar, A., Arora, S.K., Reyes, E., Parker, N 1 .L., Chung, F.I., and Peterson, L.E. 2004. CalSim: Generalized Model for Reservoir System Analysis. American Society of Civil Engineers, Journal of Water Resources Planning and Management, Vol. 130, No. 6. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/dd_jardins/ddj_x57.pdf</a >

Bureau of Reclamation. 2008. Biological Assessment on the Continued Long-term Operations of the Central Valley Project and the State Water Project, Appendix H Reclamation Temperature Model and SRWQM Temperature Model. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App05A_Surface_H2O_Model_Alts/USBR_2008_Bio_Assess_Appendix_H.pdf</a >

U. S. Bureau of Reclamation, 2015. Coordinated Long Term Operation of the CVP and SWP EIS, Appendix 5A CalSim II and DSM2 Modeling. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App05A_Surface_H2O_Model_Alts/USBR_2015_Coordinated%20Long%20Term%20Operation%20of%20the%20CVP%20and%20SWP%20EIS,%20Appendix%205A%20CalSim%20II%20and%20DSM2%20Modeling.pdf

Appendix 05A1

Ateljevich, E. 2001. Chapter 11: Improving Salinity Estimates at the Martinez Boundary. Methodology for Flow and Salinity Estimates in the Sacramento-San Joaquin Delta and Suisun Marsh. 22nd Annual Progress Report to the State Water Resources Control Board. California Department of Water Resources, Office of State Water Project Planning. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App05A1_Surface_H2O_Model_Assum/Ateljevich_2001_Chapter_11_Improving_Salinity_Estimates.pdf</a >

Ateljevich, E., and M. Yu. 2007. Chapter 4: Extended 82-year Martinez planning tide. Methodology for Flow and Salinity Estimates in the Sacramento-San Joaquin Delta and Suisun Marsh, 28th Annual Progress Report to the State Water Resources Control Board. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App05A1_Surface_H2O_Model_Assum/Ateljevich_Yu_2007_Chapter_4_Extended_Planning_Tide.pdf</a >

Bureau of Reclamation. 2008a. Central Valley Project and State Water Project Operations Criteria and Plan Biological Assessment, Appendix D CalSim-II Model, August 2008. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App05A1_Surface_H2O_Model_Assum/BoR_2008a_Bio_Assess_Appendix_D</a >

Bureau of Reclamation. 2008b. Central Valley Project and State Water Project Operations Criteria and Plan Biological Assessment, Appendix F DSM2 Model, August 2008. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App05A1_Surface_H2O_Model_Assum/BoR_2008_Bio_Assess_Appendix%20F.pdf</a >

Bureau of Reclamation, 2012a. Delta Cross Channel Temporary Closure Multi-Year Study Final Environmental Assessment, September 2012. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App05A1_Surface_H2O_Model_Assum/USBR_2012_DeltaCrossChannel.pdf</a >

Bureau of Reclamation, 2015a. Coordinated Long-Term Operation of the Central Valley Project and State Water Project, Final Environmental Impact Statement, Appendix 3A No Action Alternative: Central Valley Project and State Water Project Operations, November 2015. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App05A1_Surface_H2O_Model_Assum/USBR_2015_LTO_App3A.pdf</a >

Bureau of Reclamation, 2015b. Coordinated Long-Term Operation of the Central Valley Project and State Water Project Final Environmental Impact Statement, Section B.9 of Appendix 5A Representation of National Marine Fisheries Service Biological Opinion Reasonable and Prudent Alternative Actions for CalSim II Planning Studies.

Bureau of Reclamation, 2017. Yolo Bypass Salmonid Habitat Restoration & Fish Passage. Draft Environmental Impact Statement Environmental Impact Report, December 2017. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App05A1_Surface_H2O_Model_Assum/USBR_2017_YoloBypass.pdf</a >

California Department of Water Resources. 2008. Oroville Facilities Relicensing Final Environmental Impact Report. Available: https://cadwr.app.box.com/s/hy6iccr92gcxdyotaqfgg3r3zd66fe9b/folder/164822862468</a >.

National Marine Fisheries Service, 2009. Biological Opinion and Conference Opinion on the Long-Term Operations of the Central Valley Project and State Water Project. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App05A1_Surface_H2O_Model_Assum/NMFS_2009_Biological%20Opinion%20and%20Conference%20Opinion%20on%20the%20Long-Term%20Operations%20of%20the%20Central%20Valley%20Project%20and%20State%20Water%20Project..pdf</a >

National Marine Fisheries Service, 2019. Biological Opinion and Conference Opinion on the Long-Term Operations of the Central Valley Project and State Water Project. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App05A1_Surface_H2O_Model_Assum/NMFS_2019_Biological%20Opinion%20and%20Conference%20Opinion%20on%20the%20Long-Term%20Operations%20of%20the%20Central%20Valley%20Project%20and%20State%20Water%20Project.pdf

Appendix 05A2

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Appendix 05A3

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Appendix 05A4

There are not in-text references or citations for this appendix.

Appendix 05A5

There are not in-text references or citations for this appendix.

Appendix 05A6

ICF International. 2016. Final Environmental Impact Report/Environmental Impact Statement for the Bay Delta Conservation Plan/California WaterFix. Appendix 5A, December 2016. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App05A6_Model_Limits/ICF_2016_BDCP_FEIR_FEIS_App5A.pdf</a >

Rowell, J.H., “USBR Monthly Temperature Model-Sacramento River Basin,” Bureau of Reclamation, Sacramento, CA, June 1990. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App05A6_Model_Limits/Rowell_1990_TemperatureModel.pdf</a >

U. S. Bureau of Reclamation, 2008. Biological Assessment on the Continued Long-term Operations of the Central Valley Project and State Water Project, Appendix W Sensitivity and Uncertainty Analysis, August 2008. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App05A6_Model_Limits/USBR_2008_Appendix_W.pdf

Appendix 05A7

California Department of Water Resources. Water Travel Times. 2016. Available: https://cdec.water.ca.gov/reportapp/javareports?name=water_travel_time_2016.pdf</a >. Accessed: 2020.

California Reclamation Board and Corps. 2002. Sacramento and San Joaquin River Basins Comprehensive Study. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App05A7_Daily_Patterns/ReclamationBoard_2002_CompStudy.pdf</a >

CDEC: California Data Exchange Center. 2020. CA. Available: https://cdec.water.ca.gov/</a >.

MBK Engineers. 2019. Technical Memorandum on Revised Tisdale Weir Notch Assumptions. October 21, 2019. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App05A7_Daily_Patterns/MBK_2019_TisdaleWeirNotch.pdf</a >

USGS: U.S. Geological Survey. 2020. Available: https://www.usgs.gov/</a >.

Appendix 05B

California Department of Water Resources, Modeling Support Branch. 2021. Available: https://water.ca.gov/Library/Modeling-and-Analysis</a >.

Close, A., Haneman, W.M., Labadie, J.W., Loucks, D.P. (Chair). 2003. A Strategic Review of CALSIM II and its Use for Water Planning, Management, and Operations in Central California. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/docs/2003_stratreview.pdf</a >

Draper, A.J., Munévar, A., Arora, S.K., Reyes, E., Parker, N.L., Chung, F.I., and Peterson, L.E. 2004. CALSIM: Generalized Model for Reservoir System Analysis. American Society of Civil Engineers, Journal of Water Resources Planning and Management, Vol. 130, No. 6. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App05B_H2O_System_Model/Draper_et_al_2004_CalSim%20Generalized%20Model%20for%20Reservoir%20System%20Analysis.pdf</a >

Lund, J.R. (chair), Ford, D., Grober, L., Harmon, T., and McKinney, Daene. l. 2006. Review Panel Report San Joaquin River Valley CalSim II Model Review. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App05B_H2O_System_Model/Lund%20et%20al_2006_Review%20Panel%20Report_SJR%20CalSim%20II%20Model%20Review.pdf</a >

Sandhu, N. and D. Wilson, R. Finch, and F. Chung. (1999). “Modeling Flow-Salinity Relationships in the Sacramento-San Joaquin Delta Using Artificial Neural Networks”. Technical Information Record OSP-99-1, Sacramento: California Department of Water Resources. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App05B_H2O_System_Model/Sandhu_et_al_1999_FlowSalinityRelationship.pdf</a >

Seneviratne, S. and Wu, S. (2007). “Chapter 3 – Enhanced Development of Flow-Salinity Relationships in the Delta Using Artificial Neural Networks: Incorporating Tidal Influence”. Methodology for Flow and Salinity Estimates in the Sacramento-San Joaquin Delta and Suisun Marsh.28th Annual Progress Report to the State Water Resources Control Board. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App05B_H2O_System_Model/Seneviratne_Wu_2007_EnhancedFlowSalinityRelationship.pdf</a >

Wilbur, R. and Munévar, A. (2001). “Chapter 7 – Integration of CALSIM and Artificial Neural Networks Models for Sacramento-San Joaquin Delta Flow-Salinity Relationships”. Methodology for Flow and Salinity Estimates in the Sacramento-San Joaquin Delta and Suisun Marsh.22nd Annual Progress Report to the State Water Resources Control Board. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App05B_H2O_System_Model/Wilbur_Munevar_2001_ANNs.pdf

Appendix 05B1

There are not in-text citations or references for this appendix.

Appendix 05B2

There are not in-text citations or references for this appendix.

Appendix 05B3

There are not in-text citations or references for this appendix.

Appendix 05B4

There are not in-text citations or references for this appendix.

Appendix 05B5

CH2M HILL. 2011. USRDOM Development, Calibration, and Application. Final. Sacramento, CA. Prepared for Bureau of Reclamation, Mid Pacific Region, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App05C_Upper_Sac_River_Daily_Model/CH2M_HILL_2011_USRDOM.pdf</a >

Appendix 05C

Appendix 06A

Alpers, C. N., C. Eagles-Smith, C. Foe, S. Klasing, M. C. Marvin-DiPasquale, D. G. Slotton, and L. Windham-Meyers. 2008. Sacramento–San Joaquin Delta Regional Ecosystem Restoration Implementation Plan, Ecosystem Conceptual Model. Mercury. January 24. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06A_H2O_Qual_Constituents/Alpers_et_al_2008_Sacramento%E2%80%93San%20Joaquin%20Delta%20Regional%20Ecosystem%20Restoration%20Implementation%20Plan,%20Ecosystem%20Conceptual%20Model.pdf</a >

Bakker, E.S., and S. Hilt. 2016. Impact of water-level fluctuations on cyanobacterial blooms: options for management. Aquat Ecol 50:485-498. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06A_H2O_Qual_Constituents/Bakker_Hilt_2016_Impact%20of%20water-level%20fluctuations%20on%20cyanobacterial%20blooms%20options%20for%20management.pdf</a >

Berg, M. and M. Sutula. 2015. Factors Affecting Growth of Cyanobacteria with Special Emphasis on the Sacramento-San Joaquin Delta. August. Prepared for: The Central Valley Regional Water Quality Control Board and The California Environmental Protection Agency State Water Resources Control Board. Technical Report 869. August 2015. Available: https://amarine.com/wp-content/uploads/2018/01/Cyano_Review_Final.pdf</a >.

Beutel, M.W. 2003. Hypolimnetic Anoxia and Sediment Oxygen Demand in California Drinking Water Reservoirs. Lake and Reservoir Management 19(3):208-221. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06A_H2O_Qual_Constituents/Beutel_2003_Hypolimnetic%20Anoxia%20and%20Sediment%20Oxygen%20Demand%20in%20California%20Drinking%20Water%20Reservoirs.pdf</a >

Central Valley Regional Water Quality Control Board. 2002. Upper Sacramento River TMDL for Cadmium, Copper & Zinc. Final Report. April. Available: https://www.waterboards.ca.gov/about_us/performance_report_1516/plan_assess/docs/fy1314/11112_r5_sacramentoriver_cadmiumcopperzinc.pdf</a >.

Central Valley Regional Water Quality Control Board. 2010a. Sacramento–San Joaquin Delta Estuary TMDL for Methylmercury. Final Staff Report. April. Prepared by Wood, M., C. Foe, J. Cooke, and L. Stephen. Available online at: https://www.waterboards.ca.gov/rwqcb5/water_issues/tmdl/central_valley_projects/delta_hg/archived_delta_hg_info/april_2010_hg_tmdl_hearing/apr2010_tmdl_staffrpt_final.pdf</a >

Central Valley Regional Water Quality Control Board. 2010b. Amendments to the Water Quality Control Plan for the Sacramento River and San Joaquin River Basins for the Control of Methylmercury and Total Mercury in the Sacramento-San Joaquin River Delta Estuary (Attachment 1 to Resolution No. R5-2010-0043). Available at: https://www.waterboards.ca.gov/centralvalley/water_issues/tmdl/central_valley_projects/delta_hg/2011_1020_deltahg_bpa.pdf</a >

Central Valley Regional Water Quality Control Board. 2018. The Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board, Central Valley Region: The Sacramento River Basin and the San Joaquin River Basin. Fifth Edition. Revised May 2018. Available: https://www.waterboards.ca.gov/rwqcb5/water_issues/basin_plans/sacsjr_201902.pdf</a >.

Central Valley Regional Water Quality Control Board. 2022. 2020–2022 303(d) list. Excel file (includes potential sources) Final Revised Appendix A of the Final Staff Report for the 2020-2022 Integrated Report for Clean Water Act 303(d) List and 305(b) Report. Available: https://www.waterboards.ca.gov/water_issues/programs/water_quality_assessment/2020_2022_integrated_report.html</a >.

Chislock, M.F., E. Doster, R.A. Zitomer, and A.E. Wilson. 2013. Eutrophication: Causes, Consequences, and Controls in Aquatic Ecosystems. Nature Education Knowledge 4(4):10. Available: https://www.nature.com/scitable/knowledge/library/eutrophication-causes-consequences-and-controls-in-aquatic-102364466/</a >.

Chorus, I., and M. Welker (eds.). 2021. Toxic Cyanobacteria in Water. 2nd edition. Boca Raton, FL: CRC Press, on behalf of the World Health Organization. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06A_H2O_Qual_Constituents/Chorus_Welker_2021_ToxicCyano.pdf</a >

Gagala, I. and J. Mankiewicz-Boczek. 2012. The Natural Degradation of Microcystins (Cyanobacterial Hepatotoxins) in Fresh Water – the Future of Modern Treatment Systems and Water Quality Improvement. Polish Journal of Environmental Studies 21(5): 1125-1139. Available: https://pdfs.semanticscholar.org/58ad/83ba25a5744edd287df710ba3843b92385b1.pdf</a >.

Graham, J.L., K.A. Loftin, A.C. Ziegler, and M.T. Meyer. 2008. Cyanobacteria in Lakes and Reservoirs: Toxin and Taste-and-Odor Sampling Guidelines. Chapter A7, Section 7.5 of U.S. Geological Survey Techniques of Water-Resources Investigations, Book 7. September. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06A_H2O_Qual_Constituents/Graham_et_al_2008_Cyanobacteria%20in%20Lakes%20and%20Reservoirs.pdf</a >

Interstate Technology Regulatory Council. 2021. Strategies for Preventing and Managing Harmful Cyanobacterial Blooms (HCB-1)—Introduction to Cyanobacteria. Available: https://hcb-1.itrcweb.org/introduction/#3_3</a >.

Interstate Technology Regulatory Council. 2022. Strategies for Preventing and Managing Benthic Harmful Cyanobacterial Blooms (HCB-2)—Introduction. Available: https://hcb-2.itrcweb.org/introduction/</a >.

Lehman, P., K. Marr, G.L. Boyer, S. Acuna, and S.J. Teh. 2013. Long-term trends and causal factors associated with Microcystis abundance and toxicity in San Francisco Estuary and implications for climate change impacts. Hydrobiologica 718: 141-158. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06A_H2O_Qual_Constituents/Lehman%20et%20al_2013_Long-termTrends.pdf</a >

Lehman, P.W., T. Kurobe, S. Lesmeister, D. Baxa, A. Tung, and S.J. Teh. 2017. Impacts of the 2014 severe drought on the Microcystis bloom in San Francisco Estuary. Harmful Algae 63:94-108. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06A_H2O_Qual_Constituents/Lehman_et_al_2017_Impacts%20of%20the%202014%20severe%20drought%20on%20the%20Microcystis%20bloom%20in%20San%20Francisco%20Estuary.pdf</a >

National Oceanic and Atmospheric Administration. n.d. Harmful Algal Blooms: Tiny Organisms with a Toxic Punch. Available: https://oceanservice.noaa.gov/hazards/hab/</a >.

National Oceanic and Atmospheric Administration. 2020. What is nutrient pollution? Available: https://oceanservice.noaa.gov/facts/nutpollution.html</a >.

State Water Resources Control Board. n.d. Ammonia. Available: https://www.waterboards.ca.gov/water_issues/programs/swamp/docs/cwt/guidance/3310en.pdf</a >.

State Water Resources Control Board. 2017. Draft Staff Report for Scientific Peer Review for the Amendment to the Water Quality Control Plan for Inland Surface Waters, Enclosed Bays, and Estuaries of California, Mercury Reservoir Provisions – Mercury TMDL and Implementation Program for Reservoirs. Available at: https://www.waterboards.ca.gov/water_issues/programs/mercury/reservoirs/docs/peer_review/02_staff_report_scientific_peer_review.pdf</a >.

State Water Resources Control Board. 2020. Nitrates and Nitrites in Drinking Water. Available: https://www.waterboards.ca.gov/drinking_water/certlic/drinkingwater/Nitrate.html</a >.

Tak, S. and B.P. Vellanki. 2018. Natural organic matter as precursor to disinfection byproducts and its removal using conventional and advanced processes: state of the art review. Journal of Water and Health pp. 681-703. Available: https://pdfs.semanticscholar.org/c831/c35fc4ae931a9cda5503da4e0afd37d935c0.pdf?_ga=2.201526865.1121880597.1611627132-1995457493.1611627132</a >.

U.S. Department of Health and Human Services. 2018. Report on Carcinogens Monograph on Haloacetic Acids Found as Water Disinfection By-Products. National Toxicology Program, National Institute of Environmental Health Services. March 30. Available: https://ntp.niehs.nih.gov/ntp/roc/monographs/haafinal_508.pdf</a >.

U.S. Environmental Protection Agency. 1998. National Strategy for the Development of Regional Nutrient Criteria. Available: https://www.epa.gov/sites/production/files/2018-10/documents/nutrient-strategy-1998.pdf</a >.

U.S. Environmental Protection Agency. 2000. Water Quality Standards; Establishment of Numeric Criteria for Priority Toxic Pollutants for the State of California; Rule. U.S. Environmental Protection Agency (USEPA). Code of Federal Regulations, Title 40, Part 131, Section 38. In Federal Register: May 18, 2000 (Volume 65, No. 97), Rules and Regulations, pp. 31681-31719. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06A_H2O_Qual_Constituents/USEPA_2000_Water%20Quality%20Standards;%20Establishment%20of%20Numeric%20Criteria%20for%20Priority%20Toxic%20Pollutants%20for%20the%20State%20of%20California.pdf</a >

U.S. Environmental Protection Agency. 2014. Cyanobacteria and Cyanotoxins: Information for Drinking Water Systems. EPA 810F11001. September. Available: https://www.epa.gov/sites/production/files/2014-08/documents/cyanobacteria_factsheet.pdf</a >.

U.S. Environmental Protection Agency. 2016. Indicators: Dissolved Oxygen. National Aquatic Resource Surveys. Available: https://www.epa.gov/national-aquatic-resource-surveys/indicators-dissolved-oxygen#:~:text=What%20is%20dissolved%20oxygen%3F,of%20a%20pond%20or%20lake</a >.

U.S. Environmental Protection Agency. 2018. Summary of Cyanotoxins Treatment in Drinking Water. Available: https://www.epa.gov/ground-water-and-drinking-water/summary-cyanotoxins-treatment-drinking-water</a >.

U.S. Environmental Protection Agency. 2019. How People are Exposed to Mercury. Last updated on April 3. Available: https://www.epa.gov/mercury/how-people-are-exposed-mercury</a >.

U.S. Environmental Protection Agency. 2020a. Learn about Cyanobacteria and Cyanotoxins. Available: https://www.epa.gov/cyanohabs/learn-about-cyanobacteria-and-cyanotoxins</a >.

U.S. Environmental Protection Agency. 2020b. Preventative Measures for Cyanobacterial HABs in Surface Water. Available: https://www.epa.gov/cyanohabs/preventative-measures-cyanobacterial-habs-surface-water</a >.

U.S. Geological Survey. 2014. Mercury in the Nation’s Streams—Levels, Trends, and Implications. Circular 1395. Prepared by D. A. Wentz, M. E. Brigham, L. C. Chasar, M. A. Lutz, and D. P. Krabbenhoft. Available: https://pubs.usgs.gov/circ/1395/pdf/circ1395.pdf</a >.

U.S. Geological Survey. 2019. Nutrients and Eutrophication. Available: https://www.usgs.gov/mission-areas/water-resources/science/nutrients-and-eutrophication?qt-science_center_objects=0#qt-science_center_objects</a >.

Villanueva, C.M., S. Cordier, L. Font-Ribera, L.A. Salas, and P. Levallois. 2015. Overview of Disinfection Byproducts and Associated Health Effects. Curr Envir Health Rpt 2:107-115. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06A_H2O_Qual_Constituents/Villanueva_et_al_2015_Overview%20of%20Disinfection%20Byproducts%20and%20Associated%20Health%20Effects.pdf</a >

World Health Organization. 2005. Bromate in Drinking Water. Background document for development of WHO Guidelines for Drinking Water Quality. Available: https://cdn.who.int/media/docs/default-source/wash-documents/wash-chemicals/bromate-backgound.pdf?sfvrsn=a676385a_4</a >.

World Health Organization. 2017. Mercury and Health. March 31. Available: https://www.who.int/news-room/fact-sheets/detail/mercury-and-health</a >. Accessed: February 6, 2021.

Yu, R-Q, J. R. Flanders, E. E. Mack, R. Turner, M. B. Mirza, and T. Barkay. 2012. Contribution of coexisting sulfate and iron reducing bacteria to methylation production in freshwater river sediments. Environmental Science & Technology 46:2684-2691. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06A_H2O_Qual_Constituents/Yu_etal_2012_Contribution%20of%20coexisting%20sulfate%20and%20iron.pdf</a >

Appendix 06B

This appendix was extensively revised after publication of the RDEIR/SDEIS. Because the revisions were extensive, individual changes from the RDEIR/SDEIS are not identified.

Appendix 06B1

There are not in-text references or citations for this appendix.

Appendix 06B2

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Appendix 06B3

There are not in-text references or citations for this appendix.

Appendix 06B4

There are not in-text references or citations for this appendix.

Appendix 06B5

There are not in-text references or citations for this appendix.

Appendix 06C

There are not in-text references or citations for this appendix.

Appendix 06D

Blankinship and Associates, Inc. 2004. Use of Copper and Acrolein to Control Aquatic Weeds in Irrigation Canals: California Environmental Quality Act Initial Study and Mitigated Negative Declaration. Davis, CA. Prepared for Tehama-Colusa Canal Authority, Willows, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06D_Sites_Discharge_Temp_Model/BlankinshipAndAssociates_2004_AquaticWeedsInIrrigationCanals.pdf</a >

Appendix 06E

California Department of Water Resources. 2007. NODOS Groundwater Quality Study Data. Unpublished Raw Water Quality Data. Northern Region Office Red Bluff, CA. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_08A_GroundwaterResources/CDWR_2007_NODOSData.pdf</a >

Domagalski, J. L., and P. D. Dileanis. 2000. Water-Quality Assessment of the Sacramento River Basin, California—Water Quality of Fixed Sites, 1996-1998. U.S. Geological Survey Water-Resources Investigations Report 00-4247. National Water Quality Assessment Program. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06E_Water_Quality_Data/Domagalski_Dilaeanis_2000_Water-Quality%20Assessment%20of%20the%20Sacramento%20River%20Basin,%20California%E2%80%94Water%20Quality%20of%20Fixed%20Sites,%201996-1998.pdf</a >

“State Water Resources Control Board. 2021. Water Quality Goals Database. Available: https://public3.waterboards.ca.gov/wqgapps/</a > . Accessed Tables for multiple metals and determined standards by assuming hardness = 50 mg/L

Cadmium – Table 20: https://public3.waterboards.ca.gov/wqgapps/wq_docs/20.xls</a >

Chromium III – Table 22: https://public3.waterboards.ca.gov/wqgapps/wq_docs/22.xls</a >

Copper – Table 23: https://public3.waterboards.ca.gov/wqgapps/wq_docs/23.xls</a >

Lead – Table 24: https://public3.waterboards.ca.gov/wqgapps/wq_docs/24.xls</a >

Nickel – Table 25: https://public3.waterboards.ca.gov/wqgapps/wq_docs/25.xls</a >

Zinc – Table 30. https://public3.waterboards.ca.gov/wqgapps/wq_docs/30.xls</a >.

State Water Resources Control Board. 2022. Water Quality Goals Database. Available: https://public3.waterboards.ca.gov/wqgapps/</a >. Table for silver and determined standards by assuming hardness = 50 mg/L.

U.S. Environmental Protection Agency. 1980. Ambient Water Quality for Silver. Available: https://www.epa.gov/sites/production/files/2019-03/documents/ambient-wqc-silver-1980.pdf</a >.

U.S. Environmental Protection Agency). 2020. National Recommended Water Quality Criteria – Aquatic Life Criteria Table. Available: https://www.epa.gov/wqc/national-recommended-water-quality-criteria-aquatic-life-criteria-table</a >.

Appendix 06F

Alpers, C. N., J. L. Yee, J. T. Ackerman, J. L. Orlando, D. G. Slotton, and M. C. Marvin-DiPasquale. 2016. Prediction of fish and sediment mercury in streams using landscape variables and historical mining. Science of the Total Environment 571:364–379. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06F_Mercury_Methylmercury/Alpers_EtAl_2016.pdf</a >

Alpers, C., J.A. Fleck, M. Marvin-DiPasquale, C. A. Striker, M. Stephenson, and H. E. Taylor. 2013. Mercury cycling in agricultural and managed wetlands, Yolo Bypass, California: Spatial and seasonal variations in water quality. Science of the Total Environment 484:276–287. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06F_Mercury_Methylmercury/Alpers-et-al_2014_MercuryCycling.pdf</a >

Alpers, C. N., C. Eagles-Smith, C. Foe, S. Klasing, M. C. Marvin-DiPasquale, D. G. Slotton, and L. Windham-Meyers. 2008. Sacramento–San Joaquin Delta Regional Ecosystem Restoration Implementation Plan, Ecosystem Conceptual Model. Mercury. January 24. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06F_Mercury_Methylmercury/Alpers_et_al_2008_Sacramento%E2%80%93San%20Joaquin%20Delta%20Regional%20Ecosystem%20Restoration%20Implementation%20Plan,%20Ecosystem%20Conceptual%20Model1.pdf</a >

Azimuth. 2012. Site C – Clean Energy Project in British Columbia, Canada. Volume 2. Appendix J, Part 1. Mercury Technical Synthesis Report. Prepared for BC Hydro Power and Authority by Azimuth Consulting Group Partnership. Final Report. December. Available at: https://iaac-aeic.gc.ca/050/documents_staticpost/63919/85328/Vol2_Appendix_J.pdf</a >

Bodaly, R. A., Jansen, W.A., Majewski, A.R., Fudge, R.J.P., Strange, N.E., Derksen, A.J., and D.J., and Green, A. 2007. Post-impoundment time course of increased mercury concentrations in fish in hydroelectric reservoirs of northern Manitoba, Canada. Arch. Environ. Contam. Toxicol. 53: 379-389. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06F_Mercury_Methylmercury/Bodaly%20et%20al_2007_PostImpoundment.pdf</a >

Cabana, G., A. Tremblay, J. Kalff, and J. Rasmussen. 1994. Pelagic food chain structure in Ontario Lakes: A determinant of mercury levels in Lake Trout (Salvelinus namaycush). Canadian Journal of Fisheries and Aquatic Science 51:381–389. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06F_Mercury_Methylmercury/CabanaEtAl_1994.pdf</a >

Calder, R. S. D., A. T. Schartup, M. Li, A. P. Valberg, P. H. Balcom, and E. M. Sunderland. 2016. Future Impacts of Hydroelectric Power Development on Methylmercury Exposures of Canadian Indigenous Communities. Environmental Science and Technology 50:13115−13122. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06F_Mercury_Methylmercury/CalderEtAl_2016.pdf</a >

California Department of Water Resources (DWR). 2007. Mercury Contamination in Fish from Northern California Lakes and Reservoirs. Available: http://eaglelakeguardians.org/imagecp/pdf/MercuryinNCALakes.pdf</a >.

California Department of Water Resources (DWR). 2020. Water Data Library. Available: http://wdl.water.ca.gov/waterdatalibrary/</a >.

Central Valley Regional Water Quality Control Board (Central Valley RWQCB). 2004. Cache Creek, Bear Creek, and Harley Gulch TMDL for Mercury. Staff Report. September. Available at: https://www.waterboards.ca.gov/centralvalley/water_issues/tmdl/central_valley_projects/cache_bear_harley/</a >

Central Valley Regional Water Quality Control Board (Central Valley RWQCB). 2010a. Sacramento–San Joaquin Delta Estuary TMDL for Methylmercury. Final Staff Report. April. Prepared by Wood, M., C. Foe, J. Cooke, and S. Louie. Available: https://www.waterboards.ca.gov/rwqcb5/water_issues/tmdl/central_valley_projects/delta_hg/archived_delta_hg_info/april_2010_hg_tmdl_hearing/apr2010_tmdl_staffrpt_final.pdf</a >.

Central Valley Regional Water Quality Control Board (Central Valley RWQCB). 2010b. Amendments to the Water Quality Control Plan for the Sacramento River and San Joaquin River Basins for the Control of Methylmercury and Total Mercury in the Sacramento-San Joaquin River Delta Estuary (Attachment 1 to Resolution No. R5-2010-0043). Available at: https://www.waterboards.ca.gov/centralvalley/water_issues/tmdl/central_valley_projects/delta_hg/2011_1020_deltahg_bpa.pdf</a >

Davis, J.A., A.R. Melwani, S.N. Bezalel, J.A. Hunt, G. Ichikawa, A. Bonnema, W.A. Heim, D. Crane, S. Swenson, C. Lamerdin, and M. Stephenson. 2009. Contaminants in Fish from California Lakes and Reservoirs: Technical Report on Year One of a Two-Year Screening Survey. A Report of the Surface Water Ambient Monitoring Program (SWAMP). California State Water Resources Control Board, Sacramento, CA. Available at: https://www.waterboards.ca.gov/water_issues/programs/tmdl/records/state_board/2009/ref3475.pdf</a >

Eagles-Smith, CA, Suchanek, TH, Colwell, AE, Anderson, NL. 2008. Changes in fish diets and food web mercury bioaccumulation induced by an invasive planktivorous fish. Ecol. Appl. 18(8) Supplement. A213–A226. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06F_Mercury_Methylmercury/EAGLES-SMITH_EtAl_2008.pdf</a >

Gorski, P, D. Armstrong, J. Hurley, and M. Shafer. 2006. Speciation of aqueous methylmercury influences uptake by a freshwater alga (Selenastrum capricornutum). Environmental Toxicology and Chemistry 25(2):534–540. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06F_Mercury_Methylmercury/Gorski_etal_2006_SpeciationAqueous.pdf</a >

Gorski, P., D. Armstrong, J. Hurley, and D. Krabbenhoft. 2008. Influence of natural dissolved organic carbon on the bioavailability of mercury to a freshwater alga. Environmental Pollution 154:116–123. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06F_Mercury_Methylmercury/Gorski_etal_2008_InfluenceNatural.pdf</a >

Gray, A.B. and G.B. Pasternack. 2016. Colusa Basin Drainage Area Fluvial Sediments: Dynamics, Environmental Impacts and Recommendations for Future Monitoring of the Colusa Basin Suspended Sediment Project. Prepared for the State Water Resources Control Board Surface Water Ambient Monitoring Program (SWAMP). Final Technical Report SWAMP-MR-RB5-2016-0002. Available at: https://www.waterboards.ca.gov/water_issues/programs/swamp/docs/reglrpts/r5_cbds_reg_mar2016.pdf</a >

Hall, B.D., Bodaly, R.A., Fudge, R.J.P., Rudd, J.W.M. and Rosenberg, D.M. 1997. Food as the dominant pathway of methylmercury uptake by fish. Water Air Soil Pollution 100: 13-24. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06F_Mercury_Methylmercury/Hall_1997.pdf

Hall, B.D., V.L. St. Louis, K.R. Rolfhus, R.A. Bodaly, K.G. Beaty, M.J. Paterson, and K.A. Peech Cherewyk. 2005. Impacts of Reservoir Creation on the Biogeochemical Cycling of Methyl Mercury and Total Mercury in Boreal Upland Forests. Ecosystems. 8: 248–266. DOI: 10.1007/s10021-003-0094-3. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06F_Mercury_Methylmercury/Hall-et-al_2005_ImpactsReservoir.pdf</a >

Harris, R. C. 2018. Updated Analysis of Predicted Increases in Methylmercury Concentrations and Downstream Export from Muskrat Falls Reservoir. Tech Memo prepared by Reed Harris Environmental, Ltd. to P. Madden. Available: https://muskratfalls.nalcorenergy.com/wp-content/uploads/2020/12/Harris_MF-Reservoir-Modeling-memo-Aug-3-2018_Final.pdf</a >.

Henery, R.E., T.R. Sommer, and C.R. Goldman. 2010. Growth and Methylmercury Accumulation in Juvenile Chinook Salmon in the Sacramento River and Its Floodplain, the Yolo Bypass. Transactions of the American Fisheries Society. 139:550–563. Copyright protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06F_Mercury_Methylmercury/Henery_EtAl_2010.pdf</a >

Peterson, S., J. Van Sickle, A. Herlihy, and R. Hughs. 2007. Mercury concentration in fish from streams and rivers throughout the western United States. Environmental Science and Technology. 41: 58-65. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06F_Mercury_Methylmercury/PetersonEtAl_2007.pdf</a >

Pickhardt, P., and N. Fisher. 2007. Accumulation of Inorganic and Methylmercury by Freshwater Phytoplankton in Two Contrasting Waterbodies. Environmental Science and Technology 41:125–131. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06F_Mercury_Methylmercury/PickhardtAndFisher_2007.pdf</a >

Scudder, B.C., L.C. Chasar, D.A. Wentz, N.J. Bauch, M.E. Brigham, P.W. Moran, and D.P. Krabbenhoft. 2009. Mercury in Fish, Bed Sediment, and Water from Streams Across the United States, 1998–2005. US Geological Survey, National Water-Quality Assessment Program, Toxic Substances Hydrology Program, Scientific Investigations Report 2009–5109. Available at: https://pubs.usgs.gov/sir/2009/5109/pdf/sir20095109.pdf</a >

Slotton, D. G., S. M. Ayers, T. H. Suchanek, R. D. Weyand, and A. M. Liston. 2004. Mercury Bioaccumulation and Trophic Transfer in the Cache Creek Watershed, California. A component (Component 5B) of the multi-institution Directed Action research project: Assessment of Ecological and Human Health Impacts of Mercury in the San Francisco Bay-Delta Watershed. Prepared for CALFED Bay-Delta Program. Available: https://loer.tamug.edu/calfed/Report/Final/UCDavis_Cache_Bio_Final.pdf</a >.

Slotton, D. G., S. M. Ayers, J. E. Reuter and C. R. Goldman. 1997. Gold Mining Impacts on Food Chain Mercury in Northwestern Sierra Nevada Streams (1997 Revision). Division of Environmental Studies, University of California, Davis. Final Report. March 1997. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06F_Mercury_Methylmercury/Slotton_EtAl_1997.pdf</a >

Slotton, D.G., J.E. Reuter, and C.R. Goldman. 1995. Mercury uptake patterns of biota in a seasonally anoxic Northern California reservoir. Water, Air, and Soil Pollution, 80: 841-850. Available: https://link.springer.com/article/10.1007/BF01189735</a >. Copyright protected. See introduction for more information.

State Water Resources Control Board (SWRCB). 2020. California Environmental Data Exchange Network (CEDEN). Available at: http://www.ceden.org/</a >.

State Water Resources Control Board (SWRCB). 2017a. Appendix A: Final Staff Report: Part 2 of the Water Quality Control Plan for Inland Surface Waters, Enclosed Bays, and Estuaries of California – Tribal and Subsistence Fishing Beneficial Uses and Mercury Provisions. Available at: https://www.waterboards.ca.gov/water_issues/programs/mercury/docs/hg_prov_final.pdf</a >

State Water Resources Control Board (SWRCB). 2017b. Draft Staff Report for Scientific Peer Review for the Amendment to the Water Quality Control Plan for Inland Surface Waters, Enclosed Bays, and Estuaries of California, Mercury Reservoir Provisions – Mercury TMDL and Implementation Program for Reservoirs. Available at: https://www.waterboards.ca.gov/water_issues/programs/mercury/reservoirs/</a >

State Water Resources Control Board (SWRCB). 2017c. 2014 and 2016 California Integrated Report (Clean Water Act Section 303(d) List and 305(b) Report). Available at: https://www.waterboards.ca.gov/water_issues/programs/tmdl/integrated2014_2016.shtml</a >

Stewart, R., M. Saiki, J. Kuwabara, C. Alpers, M. Marvin-DiPasquale, and D. Krabbenhoft. 2008. Influence of plankton mercury dynamics and trophic pathways on mercury concentrations of top predator fish of a mining-impacted reservoir. Canadian Journal of Fisheries and Aquatic Science 65: 2351-2366. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06F_Mercury_Methylmercury/StewartEtAl_2008.pdf</a >

U.S. Department of Agriculture. 2016. Geospatial Data Gateway. Available: https://gdg.sc.egov.usda.gov/</a > In California Department of Food and Agriculture 2020. Development of Soil Organic Carbon Map for California. Presentation by the Office of Environmental Farming and Innovation. May. Available: https://www.cdfa.ca.gov/oefi/healthysoils/docs/DevelopmentofSoilOrganicCarbonMapforCalifornia_slides.pdf</a >.

United States Environmental Protection Agency (USEPA). 2022. National Recommended Water Quality Criteria. Available at: https://www.epa.gov/wqc/national-recommended-water-quality-criteria-tables</a >

United States Environmental Protection Agency (USEPA). 2000. Water Quality Standards; Establishment of Numeric Criteria for Priority Toxic Pollutants for the State of California; Rule. U.S. Environmental Protection Agency (USEPA). Code of Federal Regulations, Title 40, Part 131, Section 38. In Federal Register: May 18, 2000 (Volume 65, No. 97), Rules and Regulations, pp. 31681-31719. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06F_Mercury_Methylmercury/USEPA_2000_Water%20Quality%20Standards;%20Establishment%20of%20Numeric%20Criteria%20for%20Priority%20Toxic%20Pollutants%20for%20the%20State%20of%20California.pdf</a >

U.S. Geological Survey (USGS). 2000. Water-Quality Assessment of the Sacramento River Basin, California: Water-Quality, Sediment and Tissue Chemistry, and Biological Data, 1995-1998. Open-File Report 2000-391. Available at: https://ca.water.usgs.gov/user_projects/sac_nawqa/Publications/ofr_2000-391/intro.htm</a >

Wildman, R.A. 2016. Mercury and methylmercury in a reservoir during seasonal variation in hydrology and circulation. Lake and Reservoir Management. 32:89–100. DOI: 10.1080/10402381.2015.1133740. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06F_Mercury_Methylmercury/Wildman_2016_Mercury%20and%20methylmercury%20in%20a%20reservoir%20during%20seasonal%20variation%20in%20hydrology%20and%20circulation.pdf</a >

Yuba County Water Agency (YCWA). 2013. Yuba River Development Project FERC Project NO. 2246 Technical Memorandum 2-3: Water Quality. Available at: http://www.ycwa-relicensing.com/FERC%20Filings%20%20Relicensing/Forms/AllItems.aspx</a >.

Appendix 06F1

Central Valley Regional Water Quality Control Board (Central Valley RWQCB). 2010. Sacramento–San Joaquin Delta Estuary TMDL for Methylmercury. Final Staff Report. April. Prepared by Wood, M., C. Foe, J. Cooke, and S. Louie. Available: https://www.waterboards.ca.gov/rwqcb5/water_issues/tmdl/central_valley_projects/delta_hg/archived_delta_hg_info/april_2010_hg_tmdl_hearing/apr2010_tmdl_staffrpt_final.pdf</a >.

Hall, B.D., V.L. St. Louis, K.R. Rolfhus, R.A. Bodaly, K.G. Beaty, M.J. Paterson, and K.A. Peech Cherewyk. 2005. Impacts of Reservoir Creation on the Biogeochemical Cycling of Methyl Mercury and Total Mercury in Boreal Upland Forests. Ecosystems. 8: 248–266. DOI: 10.1007/s10021-003-0094-3 Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App06F_Mercury_Methylmercury/App06F1</a >

State Water Resources Control Board. 2017c. 2014 and 2016 California Integrated Report (Clean Water Act Section 303(d) List and 305(b) Report). Available: https://www.waterboards.ca.gov/water_issues/programs/tmdl/integrated2014_2016.shtml</a >.

Appendix 07A

AECOM. 2020. Geology and Seismicity Technical Memorandum. Sites Program Management Team. August 18.

Brown, C.J. (California Department of Fish and Game) 2000. North of the Delta Offstream Storage Investigation, Progress Report, Appendix D: Fish Survey Summary. Draft. Assisted by Waiman Yip, California Department of Water Resources. September. 48pp. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App07A_FluvialGeomorphicSettingInfo/Brown_CDFG_2000_North%20of%20the%20Delta%20Offstream%20Storage%20Investigation,%20Progress%20Report,%20Appendix%20D%20Fish%20Survey%20Summary.%20Draft.pdf</a >

Bureau of Reclamation and California Department of Water Resources. 2013. North-of-the-Delta Offstream Storage: 2013 progress report.

California Resources Agency. 2003. SB 1086, Sacramento River Conservation Area Forum Handbook. Prepared for The Resources Agency, State of California by the Sacramento River Advisory Council under Senate Bill 1086, authored by Senator Jim Nielsen. September. https://www.sacramentoriver.org/forum/index.php?id=handbook

Gray, A.B. and Pasternack, G.B. 2016. Colusa Basin Drainage Area Fluvial Sediments: Dynamics, Environmental Impacts and Recommendations for Future Monitoring of The Colusa Basin Suspended Sediment Project. (SWAMP-MR-RB5-2016-0002.) Prepared for Central Valley Regional Water Quality Control Board, Sacramento, CA. Available: https://www.waterboards.ca.gov/water_issues/programs/swamp/docs/reglrpts/r5_cbds_reg_mar2016.pdf</a >. Accessed: October 28, 2020.

T. Harvey & Associates, G. Mathias Kondolf, Geomorph, and Blankinship & Associates. 2008. Colusa Basin Watershed Assessment. Prepared for Colusa County Resource Conservation District. December. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App07A_FluvialGeomorphicSettingInfo/HT%20Harvey%20et%20al_2008_Colusa%20Watershed%20Assessment</a >

Northwest Hydraulic Consultants. 2006. North Delta Sedimentation Study. March. West Sacramento, CA. Prepared for California Department of Water Resources. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App07A_FluvialGeomorphicSettingInfo/NHC_2006_NorthDeltaSedimentStudy.pdf</a >

Northwest Hydraulic Consultants and Mobile Boundary Hydraulics. 2010. Comprehensive Geomorphic and Sedimentation Analyses of Lower Sacramento River for Flood Management, Erosion Mitigation and Habitat Enhancement Design. Proceedings from the 2nd Joint Federal Interagency Conference, Las Vegas, NV, June 27 – July 1, 2010. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App07A_FluvialGeomorphicSettingInfo/NHC_2010_Comprehensive%20Geomorphic%20and%20Sedimentation%20Analyses%20of%20Lower%20Sacramento%20River%20for%20Flood%20Management,%20Erosion%20Mitigation%20and%20Habitat%20Enhancement%20Design.pdf</a >

Stillwater Sciences. 2007. Programmatic Biological Assessment for the Sacramento River Bank Protection Project, Phase II. Final. Contract No. W91238-05-D-0009. October. Davis, CA. Prepared for U. S. Army Corps of Engineers, Sacramento District, Sacramento CA.

U.S. Army Corps of Engineers. 2009. Draft Environmental Assessment/Initial Study for Levee Repair of 25 Erosion Sites: Sacramento River Bank Protection Project. Prepared by North State Resources, Inc., Redding, California, and Stillwater Sciences, Inc., Berkeley, California, for U.S. Army Corps of Engineers, Sacramento District and Central Valley Flood Protection Board, Sacramento, California. U.S. Army Corps of Engineers Contract W91238-07-D-0022. April 2009.

Appendix 07B

Greimann, B., Huang. J. (2007). “Sediment and River Hydraulics –Meander (SRH-Meander) , Version 1.0),” Bureau of Reclamation, Reclamation Report. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App07B_Hydrodynamic_Geomorph_Model/Greimann%20et%20al_2007_SRH-Meander%20(Version%201.0).pdf</a >

Crosato, A., (2007). “Effects of smoothing and regridding in numerical meander migration models”, Water Resources Research, VOL. 43, W01401. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App07B_Hydrodynamic_Geomorph_Model/Crosato_2007_Effects%20of%20smoothing%20and%20regridding.pdf</a >

CH2MHILL (2011). North-of-the-Delta Off-stream Storage Administrative Draft Environmental Impact Report/Study and Feasibility Study – Modeling Databases Transmittal (Operations and Physical Models), Transmittal Memorandum, from Rob Leaf dated February 20, 2011. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App07B_Hydrodynamic_Geomorph_Model/CH2M%20HILL_2011_USRDOM.pdf</a >

Engelund, F. (1974). “Flow and Bed Topography in Channel Bends,” ASCE Journal Hydraulics Division, Vol. 100(11), 1631-1648.

Buer, K. (2011) Personal Communication.

Johannesson, H., and Parker, G. (1989). “Linear Theory of River Meanders,” in Water Resources Monograph No. 12: River Meandering, edited by S. Ikeda and G. Parker, American Geophysical Union, Washington DC, 181-213.

U.S. Army Corps of Engineers. (December 2002). Technical studies: appendix D hydraulic technical documentation, Sacramento and San Joaquin River Basins, Comprehensive Study, Sacramento District.

Sun, T., Meakin, P., and Jøssang, (2001a). “A computer model for meandering rivers with multiple bed load sediment sizes, I. Theory,” Water Resources Research, Vol.37(8), 2227-2241.

Sun, T., Meakin, P., and Jøssang, (2001b). “A computer model for meandering rivers with multiple bed load sediment sizes, II. Computer simulations,” Water Resources Research, Vol.37(8), 2243-2258.

Appendix 08A

Berkstresser, C. F. 1973. Base of Fresh Groundwater, Approximately 3000 μMhos, in the Sacramento Valley and Sacramento – San Joaquin Delta, California. Water Resources Investigation 40-73. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App08A_Ground_H2O/Berkstresser_1973_Base%20of%20Fresh%20Groundwater,%20Approximately%203000%20%CE%BCMhos,%20in%20the%20Sacramento%20Valley%20and%20Sacramento%20%E2%80%93%20San%20Joaquin%20Delta,%20California.pdf</a >

Blake, M.C., D. S. Harwood, Jr., E. J. Helley, W. P. Irwin, A. S. Jayko, and D. L. Jones. 1999. Geologic Map of The Red Bluff 30′ × 60′ Quadrangle, California. U.S. Geological Survey. https://pubs.usgs.gov/imap/2542/i2542_sheet.pdf

Bureau of Reclamation and Tehama-Colusa Canal Authority. 2020. Initial Study/Environmental Assessment: 2020 Tehama-Colusa Canal Authority In-Basin Water Transfers. January 2020. https://files.ceqanet.opr.ca.gov/258931-3/attachment/YKAPKJvrTW5XlZnNhh5AXz6rAmXg6a06ULk_syEAHXhRdRpU4lLh97u9_QdU9XxhKaOO7aILw3fy1dfi0

California Department of Water Resources. 2020a. Sustainable Groundwater Management Act (SGMA) Basin Prioritization Data. Colusa, Red Bluff, and Yolo subbasins. Available: https://data.cnra.ca.gov/dataset/sgma-basin-prioritization</a >. Accessed: March 6, 2023. Copyright Protected. See introduction for more information.

California Department of Water Resources. 2020b. SGMA Data Viewer. Colusa, Red Bluff and Yolo Subbasins. Available: https://sgma.water.ca.gov/webgis/?appid=SGMADataViewer#gwlevels</a >.

California Department of Water Resources. 2020c. Well Completion Reports Map Application. Colusa, Red Bluff and Yolo Subbasins. https://dwr.maps.arcgis.com/apps/webappviewer/index.html?id=181078580a214c0986e2da28f8623b37</a >.

California Department of Water Resources. 2018. 5-021.67 Sacramento Valley – Yolo. Last update March 5, 2018. Available: https://water.ca.gov/-/media/DWR-Website/Web-Pages/Programs/Groundwater-Management/Bulletin-118/Files/2016-Basin-Boundary-Descriptions/5_021_67_Yolo.pdf</a >.

California Department of Water Resources. 2016. California’s Groundwater: Working Toward Sustainability. Bulletin 118. Interim Update 2016. Available: https://data.cnra.ca.gov/dataset/75eb6072-6810-471d-ba73-d8eadec36564/resource/2b9cbe00-55f6-420e-9aa7-8e61cb5ee1fc/download/b118-interim-update-2016_ay_19.pdf</a >.

California Department of Water Resources. 2011. Unpublished 2011 Well Completion Report Data. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App08A_Ground_H2O/CDWR_2011_Unpub.pdf</a >

California Department of Water Resources. 2007. NODOS GW Quality Study Data. Unpublished Raw Water Quality Data. Northern Region Office, Red Bluff, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App08A_Ground_H2O/CDWR_2007_NODOSData.pdf</a >

California Department of Water Resources. 2006. California’s Groundwater. Bulletin 118. Sacramento Valley Groundwater Basin, Colusa Subbasin. Last update January 1, 2006. Available: https://data.cnra.ca.gov/dataset/12e534ff-f604-4ba9-82db-486d81e082ff/resource/8d756bd0-77f5-4602-9758-d0e7f0180131/download/b118_2003_basindescription_5_021_52.pdf</a >.

California Department of Water Resources. 2004a. California’s Groundwater Bulletin 118. Funks Creek Groundwater Basin. Last update February 27, 2004. Available: https://data.cnra.ca.gov/dataset/12e534ff-f604-4ba9-82db-486d81e082ff/resource/04edd2d1-38e4-4d65-96ce-9516b406cdf4/download/b118_2003_basindescription_5_090.pdf</a >.

California Department of Water Resources. 2004b. California’s Groundwater Bulletin 118. Antelope Creek Groundwater Basin. Last update February 27, 2004. Available: https://data.cnra.ca.gov/dataset/12e534ff-f604-4ba9-82db-486d81e082ff/resource/1881297f-edef-427c-8144-4b6ef61cd380/download/b118_2003_basindescription_5_091.pdf</a >.

California Department of Water Resources. 2004c. California’s Groundwater. Bulletin 118. Sacramento Valley Groundwater Basin, Red Bluff Subbasin. Last update February 27, 2004. Available: https://data.cnra.ca.gov/dataset/12e534ff-f604-4ba9-82db-486d81e082ff/resource/91cd3177-9b41-4d76-88a3-24ecede856df/download/b118_2003_basindescription_5_021_50.pdf</a >.

California Department of Water Resources. 2004d. California’s Groundwater. Bulletin 118. Sacramento Valley Groundwater Basin, Yolo Subbasin. Last update February 27, 2004. Available: https://data.cnra.ca.gov/dataset/12e534ff-f604-4ba9-82db-486d81e082ff/resource/eb50cbc6-598b-48e2-8bce-2895364e7784/download/b118_2003_basindescription_5_021_67.pdf</a >.

California Department of Water Resources. 2003. California’s Groundwater. Bulletin 118–Update 2003. October. Available: https://data.cnra.ca.gov/dataset/75eb6072-6810-471d-ba73-d8eadec36564/resource/5fc7e39c-34e7-433e-9dbe-ff93ce76787f/download/bulletin_118_update_2003.pdf</a >.

California Department of Water Resources, Northern District. 1987. Antelope Groundwater Study. April.

California Department of Water Resources, Northern Regional Office. 2020. Northern Sacramento Valley Dedicated Monitoring Well Groundwater Quality Assessment. January 2020.

California Department of Water Resources, Northern Regional Office. 2014. Geology of Northern Sacramento Valley, California. Updated: September 22, 2014. Prepared by the California Department of Water Resources Northern Region Office Groundwater and Geologic Investigations Section. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App08A_Ground_H2O/CDWR_Northern%20Regional%20Office_2014_Geology%20of%20Northern%20Sacramento%20Valley,%20California.pdf</a >

California Water Boards. 2021. Groundwater Ambient Monitoring and Assessment Program. Groundwater Information System. Colusa, Red Bluff and Yolo Subbasins. Available: https://gamagroundwater.waterboards.ca.gov/gama/gamamap/public/</a >. Accessed: January 29, 2021.

Central Valley Regional Water Quality Control Board. 2011. A Compilation of Water Quality Goals. Searchable database. Updated: September 9, 2011. Sacramento, California. Available: http://www.waterboards.ca.gov/water_issues/programs/water_quality_goals/index.shtml</a >.

Central Valley Regional Water Quality Control Board. 2008. Irrigated Lands Regulatory Program Existing Conditions Report. Chapter 4, Groundwater Quality. Prepared by ICF Jones & Stokes. December.

Colusa and Glenn Groundwater Authorities. 2020. Colusa Subbasin Public Workshop. December 9 and 10, 2020. Prepared by Davids Engineering.

Colusa Groundwater Authority. 2021. Projects. Available: https://colusagroundwater.org/projects/</a >.

Davids Engineering. 2016. Analysis of Land and Water Use in Relation to Groundwater Conditions in Colusa County. January. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App08A_Ground_H2O/Davids%20Engineering,%20Inc_2016_Analysis%20of%20Land%20and%20Water%20Use%20in%20Relation%20to%20Groundwater%20Conditions%20in%20Colusa%20County.pdf</a >

Davids Engineering and West Yost. 2022. Colusa Subbasin Groundwater Sustainability Plan, Annual Report. April 2022. Prepared for Colusa and Glenn Groundwater Authorities. Available: https://sgma.water.ca.gov/portal/gspar/preview/135</a >.

Davids Engineering, ERA Economics, West Yost, Woodard & Curran, Inc., and the California State University, Sacramento. 2021. Colusa Subbasin Groundwater Sustainability Plan. Prepared for Colusa and Glenn Groundwater Authorities. Available: https://colusagroundwater.org/projects/groundwater-sustainability-plan/</a >.

Dudley, T., Spangler D., Fulton A., Staton, K., Lawrence, S., Ehorn, B., Ward, M. 2005. Seeking an Understanding of The Groundwater Aquifer Systems in The Northern Sacramento Valley: An Update. Article No. 1. Red Bluff. CA. Prepared for Butte, Glenn, Tehama, and Colusa Counties. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App08A_Ground_H2O/Dudley_et_al_2005_Seeking%20an%20Understanding%20of%20The%20Groundwater%20Aquifer%20Systems%20in%20The%20Northern%20Sacramento%20Valley.pdf</a >

GEI Consultants, Inc. 2022. Yolo Subbasin Groundwater Agency 2022 Groundwater Sustainability Plan. Prepared for Yolo Subbasin Groundwater Agency. Available: https://www.yologroundwater.org/files/acff83c75/YoloGSP_Adopted.pdf</a >.

Groundwater Exchange. 2019. Sacramento Valley – Yolo. Available: https://groundwaterexchange.org/basin/sacramento-valley-17-2/</a >.

Luhdorff & Scalmanini Consulting Engineers. 2022. Red Bluff Subbasin Groundwater Sustainability Plan. Prepared for Tehama County Flood Control and Conservation District. Available: https://tehamacountywater.org/gsa/groundwater-sustainability-plans-public-draft/</a >.

Page, R. W. 1986. Geology of the Fresh Groundwater Basin of the Central Valley, California. U.S. Geological Survey Professional Paper 1401-C. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App08A_Ground_H2O/Page_1986_Geology%20of%20the%20Fresh%20Groundwater%20Basin%20of%20the%20Central%20Valley,%20California.pdf</a >

Sites Project Authority. 2017a. Sites Reservoir Project Draft EIR/EIS, Chapter 10, Groundwater Resources. Available: https://sitesproject.org/environmental-review/</a >.

Sites Project Authority. 2017b. Sites Reservoir Project Draft EIR/EIS, Chapter 11, Groundwater Quality. Available: https://sitesproject.org/wp-content/uploads/2018/03/11-GW_Qual_SitesDraftEIR-EIS_August2017.pdf</a >.

The Nature Conservancy. 2018. Case Study, Colusa County, Managed Aquifer Recharge: benefitting aquifers, farmers, and migratory birds. Available: https://groundwaterresourcehub.org/public/uploads/pdfs/GWR_Hub_Colusa_Co_case_study_1.pdf</a >.

U.S. Geological Survey, 2019, Specific conductance: U.S. Geological Survey Techniques and Methods, book 9, chap. A6.3, 15 p. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App08A_Ground_H2O/USGS_2019_Specific%20conductance%20USGS%20Techniques%20and%20Methods,%20book%209,%20chap.%20A6.3,%2015%20p..pdf</a >

Water Resources Association of Yolo County. 2005. Yolo County Integrated Regional Water Management Plan, Background Data and Information Appendix. Chapter 2 Geology, Hydrogeology, And Groundwater in Yolo County and Vicinity. May 2005. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App08A_Ground_H2O/WRAYC_2005_Yolo%20County%20Integrated%20Regional%20Water%20Management%20Plan,%20Background%20Data%20and%20Information%20Appendix.%20Chapter%202%20Geology,%20Hydrogeology,%20And%20Groundwater%20in%20Yolo%20County%20and%20Vicinity.pdf</a >

Yolo County. 2005. Yolo County General Plan Update, Background Report. Chapter 2, Conservation. Prepared by Jones and Stokes. Available: https://www.yolocounty.org/home/showdocument?id=4498</a >.

Appendix 08B

California Department of Water Resources (DWR). 2017. Groundwater Information Center Interactive Map Application. https://gis.water.ca.gov/app/gicima/</a >.

CH2M HILL and MBK Engineers. 2014. Sacramento Valley Finite Element Groundwater Flow Model User’s Manual. Prepared for the United States Department of the Interior Bureau of Reclamation. October.

Freeze, Alan R. and John A. Cherry. 1979. Groundwater. Prentice Hall, Inc. 604 pp. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App08B_Ground_H2O_Model/Freeze_Cherry_1979.pdf</a >

Harbaugh, A.W. 1990. A Computer Program for Calculating Subregional Water Budgets Using Results from the U.S. Geological Survey Modular Three-Dimensional Finite-Difference Ground-Water Flow Model. U.S. Geological Survey Open-File Report 90-392. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App08B_Ground_H2O_Model/Harbaugh_1990_A%20Computer%20Program%20for%20Calculating%20Subregional%20Water%20Budgets%20Using%20Results%20from%20the%20U.S.%20Geological%20Survey%20Modular%20Three-Dimensional%20Finite-Difference%20Ground-Water%20Flow%20Model.pdf</a >

Harbaugh, A.W. and E.R. Banta. 2000. MODFLOW-2000, The U.S. Geological Survey Modular Ground- Water Model—User Guide to Modularization Concepts and the Ground-Water Flow Process. US Geological Survey Open-File Report 00-92. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App08B_Ground_H2O_Model/Harbaugh_Banta_2000_MODFLOW-2000,%20The%20U.S.%20Geological%20Survey%20Modular%20Ground-Water%20Model%E2%80%94User%20Guide%20to%20Modularization%20Concepts%20and%20the%20Ground-Water%20Flow%20Process.pdf</a >

Schmid, Wolfgang, R.T. Hanson, Thomas Maddock III, and S.A. Leake. 2006. User Guide for the Farm Process (FMP1) for the U.S. Geological Survey’s Modular Three-Dimensional Finite-Difference Ground-Water Flow Model, MODFLOW-2000: U.S. Geological Survey Techniques and Methods 6-A17. 127 p. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App08B_Ground_H2O_Model/Schmid_et_al_2006_User%20Guide%20for%20the%20Farm%20Process%20(FMP1)%20for%20the%20U.S.%20Geological%20Survey%E2%80%99s%20Modular%20Three-Dimensional%20Finite-Difference%20Ground-Water%20Flow%20Model,%20MODFLOW-2000.pdf</a >

United States Geological Survey (USGS). 2017a. Central Valley Hydrologic Model: Numerical Model. https://ca.water.usgs.gov/projects/central-valley/cvhm-numerical-model.html</a >.

United States Geological Survey (USGS). 2017b. Central Valley Hydrologic Model: Farm Process https://ca.water.usgs.gov/projects/central-valley/cvhm-farm-process.html</a >.

United States Geological Survey (USGS). 2016. Central Valley Hydrologic Model: Numerical Model. http://pubs.usgs.gov/pp/1766/PP1766-CVHM_input.zip</a >.

United States Geological Survey (USGS). 2009. Groundwater Availability of the Central Valley Aquifer, California. Regional Aquifer System Analysis. Professional Paper 1766. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App08B_Ground_H2O_Model/USGS_2009_Groundwater%20Availability%20of%20the%20Central%20Valley%20Aquifer,%20California.pdf</a >

United States Geological Survey (USGS). 1985. Water Budget for Major Streams in the Central Valley, California, 1961–77. Regional Aquifer System Analysis. Open File Report 85-401. Sacramento ,CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App08B_Ground_H2O_Model/USGS_1985_Water%20Budget%20for%20Major%20Streams%20in%20the%20Central%20Valley,%20California,%201961%E2%80%9377.pdf</a >

Winston, R.B. 2000. GW-Chart. Graphical User Interface for MODFLOW, Version 4: U.S. Geological Survey Open-File Report 00-315. Copyright Protected. See introduction for more information. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App08B_Ground_H2O_Model/Winston_2000.pdf

Appendix 09A

California Native Plant Society. 2020. Inventory of Rare and Endangered Plants of California (online edition, v8-03 0.39). [Quads 4012242, 4012232, 4012222, 4012212, 4012223, 4012213, 4012214, 4012221, 4012211, 4012127, 3812271, 3812188, 3812177, 3812178, 3812281, 3812187, 3912117, 3912127, 3912128, 3912126, 3912273, 3912271, 3912272, 3912263, 3912262, 3912261, 3912252, 3912251, 3912242, 3912253, 3912241, 3912231, 3912232, 3912233, 3912244, 3912234, 3912224, 3912223, 3912222, 3912168, 3912178 3912116 and 3812176;]. Website http://www.rareplants.cnps.org</a >.

Hill, S. R. 2015. Sidalcea keckii. Flora of North America. Available: http://www.efloras.org/florataxon.aspx?flora_id=1&taxon_id=250101137</a >.

Sites Project Authority and U.S. Bureau of Reclamation. 2017. Sites Reservoir Project Draft Environmental Impact Report/Environmental Impact Statement. August. Available: https://sitesproject.org/environmental-review/</a >.

Yolo Habitat Conservancy. 2018. Yolo Habitat Conservation Plan/Natural Community Conservation Plan. Chapter 2, Existing Ecological Conditions. Final, April 2018. Available: Available: https://www.yolohabitatconservancy.org/documents</a >.

U.S. Fish and Wildlife Service. 2009. Slender Orcutt Grass (Orcuttia tenuis) 5-year Review: Summary and Evaluation. Sacramento Fish and Wildlife Office. Sacramento, California. Accessed: July 7, 2021. Copyright protected. See introduction for more information

Appendix 09B

California Department of Fish and Wildlife. 2020. California Sensitive Natural Communities. Last revised: September 9, 2020. Available: https://www.wildlife.ca.gov/Data/VegCAMP/Natural-Communities</a >.

California Department of Fish and Wildlife. 2021a. California Natural Diversity Database, RareFind 5, January 13, 2021 [43 Quadrangles: Balls Ferry, Bend, Bird Valley, Black Butte Dam, Dunnigan, Eldorado Bend, Foster Island, Fruto NE, Gerber, Gilmore Peak, Glenn, Hamilton City, Hough Springs, Kirkville, Kirkwood, Knights Landing, Leesville, Lodoga, Logandale, Los Molinos, Manor Slough, Maxwell, Meridian, Moulton Weir, Nord, Ord Ferry, Orland, Panther Spring, Princeton, Rail Canyon, Red Bank, Red Bluff East, Red Bluff West, Sites, Stone Valley, Sutter Causeway, Taylor Monument, Tuscan Springs, West of Gerber, Wildwood School, Williams, Willows, Zamora]. Available: https://apps.wildlife.ca.gov/rarefind/view/RareFind.aspx</a >. Copyright protected. See introduction for more information

California Department of Fish and Wildlife. 2021b. Guide to Wildlife Habitats of California. Available: https://wildlife.ca.gov/Data/CWHR/Wildlife-Habitats</a >.

California Department of Food and Agriculture. 2021. Encycloweedia. Available: https://www.cdfa.ca.gov/plant/IPC/encycloweedia/weedinfo/winfo_table-sciname.html</a >. Accessed: January 8, 2021.

California Department of Water Resources. 2000a. North of Delta Offstream Storage Investigation Progress Report. January 4, 2000.

_____. 2000b. North of Delta Offstream Storage Investigation Progress Report, Appendix B: Wetland Delineation and Field Studies Report. Draft. Prepared for Integrated Storage Investigations, CALFED Bay-Delta Program. April 2000. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App09B_VegWetlandMethodsInfo/CDWR_2000_Ndelt.pdf</a >

California Invasive Plant Council (Cal-IPC). 2021. Inventory of Invasive Plant Species of California. Last revised: Feb. 1, 2017. Available: https://www.cal-ipc.org/plants/inventory/</a >.

California Native Plant Society, Rare Plant Program. 2020. Inventory of Rare and Endangered Plants of California (online edition, v8-03 0.39). Website http://www.rareplants.cnps.org</a >

California Native Plant Society. 2021. A Manual of California Vegetation Online. Available: https://vegetation.cnps.org/keys</a >.

Cowardin, L. M., V. Carter, F. C. Golet, and E. T. LaRoe. 1979. Classification of Wetlands and Deepwater Habitats of the United States. Available: https://www.nrc.gov/docs/ML1801/ML18019A904.pdf</a >.

Environmental Systems Research Institute. 2019. ESRI’s World Imagery Map. 11/03/2019. Retrieved from https://services.arcgisonline.com/ArcGIS/rest/services/World_Imagery/MapServer</a >.

Google Earth. 2021. Map showing Project Boundaries in Glenn and Colusa Counties. Google Earth, earth.google.com/web/

Natural Resources Conservation Service. 2020a. Climate Data for Colusa, California. Available: http://agacis.rcc-acis.org/?fips=06011</a > and http://agacis.rcc-acis.org/?fips=06021</a >.

Natural Resources Conservation Service. 2020b. Climate Data for Stony Gorge, California. Available: http://agacis.rcc-acis.org/?fips=06011</a > and http://agacis.rcc-acis.org/?fips=06021</a >.

Natural Resources Conservation Service. 2020c. Official Soil Series Descriptions. Available: https://www.nrcs.usda.gov/wps/portal/nrcs/detail/soils/survey/geo/?cid=nrcs142p2_053587</a >.

Natural Resources Conservation Service. 2020d. Soil Survey Geographic (SSURGO) Database for Colusa and Glenn Counties, California [Online]. U.S. Department of Agriculture. Available: https://websoilsurvey.sc.egov.usda.gov/App/WebSoilSurvey.aspx</a >.

Sites Project Authority and U.S. Bureau of Reclamation. 2017. Sites Reservoir Project Draft Environmental Impact Report/Environmental Impact Statement. August 2017. Available: https://sitesproject.org/environmental-review/</a >.

U.S. Fish and Wildlife Service. 2020. National Wetlands Inventory, Wetlands Online Mapper. Division of Habitat and Resource Conservation. Arlington, VA. October 01, 2020. Available: https://www.fws.gov/wetlands/data/Mapper.html</a >.

U.S. Geological Survey. 2016. National Hydrography Dataset (NHD) Downloadable Data Collection Harvest Source. https://www.usgs.gov/core-science-systems/ngp/national-hydrography/national-hydrography-dataset?qt-science_support_page_related_con=0#qt-science_support_page_related_con</a >

U.S. Geological Survey. 2020. 7.5-minute Topological Map for the Balls Ferry, Bend, Bird Valley, Black Butte Dam, Dunnigan, Eldorado Bend, Foster Island, Fruto NE, Gerber, Gilmore Peak, Glenn, Hamilton City, Hough Springs, Kirkville, Kirkwood, Knights Landing, Leesville, Lodoga, Logandale, Los Molinos, Manor Slough, Maxwell, Meridian, Moulton Weir, Nord, Ord Ferry, Orland, Panther Spring, Princeton, Rail Canyon, Red Bank, Red Bluff East, Red Bluff West, Sites, Stone Valley, Sutter Causeway, Taylor Monument, Tuscan Springs, West of Gerber, Wildwood School, Williams, Willows, Zamora Quadrangles. Reston, VA: U.S. Department of the Interior.

Witham, C. W., R. F. Holland, and J. Vollmar. 2014. Vernal Pool Distribution – California’s Great Valley – 2012 [ds1070]. Publication date 2014-08. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App09B_VegWetlandMethodsInfo/Witham_2014_Vernal%20Pool%20Distribution%20%E2%80%93%20California’s%20Great%20Valley%20-%202012%20%5Bds1070%5D..pdf

Appendix 10A

Andersen, B.R. and K. Geluso. 2018. Roost Characteristics and Clustering Behavior of Western Red Bats (Lasiurus blossevillii) in Southwestern New Mexico. Western North American Journalist 78(2):174–183. Copyright protected. See introduction for more information

Andres, B. A., and K. L. Stone. 2009. Conservation Plan for the Mountain Plover (Charadrius Montanus). Version 1.0. Prepared for the Manomet Center for Conservation Sciences. Manomet, Massachusetts. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/Andres_%20Stone_2009_Conservation%20Plan%2</a >

Baker, M. D., M. J. Lacki, G. A. Falxa, P. L. Droppelman, and R. A. Slack. 2008. Habitat Use of Pallid Bats in Coniferous Forests of Northern California. Northwest Science, Volume 82(4):269–275. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/Baker_et_al_2008_Habitat%20Use%20of%20Pallid%20Bats%20in%20Coniferous%20Forests%20of%20Northern%20California.pdf</a >

Calflora. 2021. The Calflora Database. Search for milkweed species. Available: https://www.calflora.org/</a >. Accessed: February 16, 2021.

California Department of Fish and Game. 2000. California Wildlife Habitat Relationships System. Townsend’s Big-eared Bat Life History Account. Life history accounts for species in the California Wildlife Habitat Relationships System were originally published in: Zeiner, D.C., W.F. Laudenslayer, Jr., K.E. Mayer, and M. White, eds. 1988-1990. California’s Wildlife. Vol. I-III. California Department of Fish and Game, Sacramento, California. Available: https://www.wildlife.ca.gov/Data/CWHR/Life-History-and-Range</a >.

California Department of Fish and Game. 2005a. California Wildlife Habitat Relationships System. Yellow-breasted Chat Life History Account. Life history accounts for species in the California Wildlife Habitat Relationships System were originally published in: Zeiner, D.C., W.F. Laudenslayer, Jr., K.E. Mayer, and M. White, eds. 1988-1990. California’s Wildlife. Vol. I-III. California Department of Fish and Game, Sacramento, California. Available: https://www.wildlife.ca.gov/Data/CWHR/Life-History-and-Range</a >. Available https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=2125&inline=1</a >

California Department of Fish and Game. 2005b. California Wildlife Habitat Relationships System. Yellow Warbler Life History Account. Life history accounts for species in the California Wildlife Habitat Relationships System were originally published in: Zeiner, D.C., W.F. Laudenslayer, Jr., K.E. Mayer, and M. White, eds. 1988-1990. California’s Wildlife. Vol. I-III. California Department of Fish and Game, Sacramento, California. Available: https://www.wildlife.ca.gov/Data/CWHR/Life-History-and-Range</a >.

California Department of Fish and Game. 2005c. California Wildlife Habitat Relationships System. Silver-haired Bat Life History Account. Life history accounts for species in the California Wildlife Habitat Relationships System were originally published in: Zeiner, D.C., W.F. Laudenslayer, Jr., K.E. Mayer, and M. White, eds. 1988-1990. California’s Wildlife. Vol. I-III. California Department of Fish and Game, Sacramento, California. Available: https://www.wildlife.ca.gov/Data/CWHR/Life-History-and-Range</a >.

California Department of Fish and Game. 2008. California Wildlife Habitat Relationships System. Mountain Plover Life History Account. Life history accounts for species in the California Wildlife Habitat Relationships System were originally published in: Zeiner, D.C., W.F. Laudenslayer, Jr., K.E. Mayer, and M. White, eds. 1988-1990. California’s Wildlife. Vol. I-III. California Department of Fish and Game, Sacramento, California. Available: https://www.wildlife.ca.gov/Data/CWHR/Life-History-and-Range</a >.

California Department of Fish and Wildlife. 2016. A Status Review of Townsend’s Big-Eared Bat (Corynorhinus townsendii) in California. Prepared for the State of California Fish and Game Commission. Sacramento, CA.

California Department of Fish and Wildlife. 2020a. Special Status Invertebrate Species Accounts. Anthicus antiochensis. Available https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=107584&inline=1</a > . Accessed: February 18, 2021. Copyright protected. See introduction for more information

California Department of Fish and Wildlife. 2020b. Special Status Invertebrate Species Accounts. Anthicus sacramento. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=107587&inline=1</a >. Accessed: February 18, 2021. Copyright protected. See introduction for more information

California Department of Fish and Wildlife. 2021a. California Natural Diversity Database, RareFind 5, January. Search for special-status wildlife within 5 miles of the study area, along the Sacramento River, and for selected species records in Glenn and Colusa Counties. Sacramento, CA. Copyright protected. See introduction for more information

California Department of Fish and Wildlife. 2021b. Special Animals List. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=109406&inline</a >. Last updated: February 2021.

Cornell Lab of Ornithology. 2019. All About Birds. Last revised: 2019. Available: https://www.allaboutbirds.org/guide/Northern_Harrier/</a >.

Eckerle, K. P. and C. F. Thompson. 2020. Yellow-breasted Chat (Icteria virens), version 1.0. In Birds of the World (A. F. Poole and F. B. Gill, Editors). Introduction, Habitat, Diet and Foraging, Breeding. Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.yebcha.01</a >

Gardali, T. No date. Modesto song sparrow (Melospiza melodia mailliardi) Point Reyes Bird Observatory, Stinson Beach, CA.

Hatfield, R.G., S. Colla, S. Jepsen, L. Richardson, R. Thorp, and S. Foltz Jordan. 2015a. IUCN Assessments for North American Bombus spp. March. The Xerces Society for Invertebrate Conservation. Available: https://xerces.org/sites/default/files/publications/14-065.pdf</a >.

Hatfield, R., S. Jepsen, R. Thorp, L. Richardson, S. Colla, and S. Foltz Jordan. 2015b. Bombus occidentalis. The IUCN Red List of Threatened Species 2015: e.T44937492A46440201. https://dx.doi.org/10.2305/IUCN.UK.2015-2.RLTS.T44937492A46440201.en</a >.

Holland, D. C. 1994. The Western Pond Turtle: Habitat and History. Final Report. DOE/BP-62137-1. Portland, OR: Bonneville Power Administration, U.S. Dept. of Energy, and Wildlife Diversity Program, Oregon Department of Fish and Wildlife. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/Holland_1994_The%20Western%20Pond%20Turtle%20Habitat%20and%20History.%20Final%20Report.pdf</a >

Jennings, M. R., and M. P. Hayes. 1994. Amphibian and Reptile Species of Special Concern in California. Rancho Cordova, CA: California Department of Fish and Game. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/Jennings_Hayes_1994_Amphibian_reptile_species_of_Special_Concern_in_CA.pdf</a >

Jennings, M. R., M. P. Hayes, and D. C. Holland. 1992. A Petition to the U.S. Fish and Wildlife Service to Place the California Red-Legged Frog (Rana aurora draytonii) and the Western Pond Turtle (Clemmys marmorata) on the List of Endangered and Threatened Wildlife and Plants. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/Jennings_et_al_1992_CRLF_WPT_Petition.pdf</a >

Koch, J. B., J. P. Strange, and P. Williams. 2012. Bumble Bees of the Western United States. Pollinator Partnership; San Francisco, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/Koch_et_al_2012_Bumble%20Bees%20of%20the%20Western%20United%20States.pdf</a >

Lay, Chris. 2008. The Status of the American Badger in the San Francisco Bay Area. MS Thesis. San Jose State University. San Jose, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/Lay_2008_The%20Status%20of%20the%20American%20Badger%20in%20the%20San%20Francisco%20Bay%20Area.%20MS%20Thesis.pdf</a >

Lovich, J. and K. Meyer. 2002. The Western Pond Turtle (Clemmys marmorata) in the Mojave River, California, USA: Highly Adapted Survivor or Tenuous Relict? Journal of Zoology London 256:537–545. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/Lovich_Meyer_2002_The%20Western%20Pond%20Turtle%20(Clemmys%20marmorata)%20in%20the%20Mojave%20River,%20California,%20USA.pdf</a >

Lowther, P. E., C. Celada, N. K. Klein, C. C. Rimmer, and D. A. Spector. 2020. Yellow Warbler (Setophaga petechia), version 1.0. In Birds of the World (A. F. Poole and F. B. Gill, Editors). Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.yelwar.01</a >. Copyright protected. See introduction for more information

Morey, S. R. 2005. Spea hammondii. In Lannoo, M.J. (Ed.).: Amphibian Declines: The Conservation Status of United States Species. University of California Press, Berkeley, 514–517. Copyright protected. See introduction for more information Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/Morey_in%20Lanoo_2005_spadefoot.pdf</a >

Petit, D.R., K.E. Petit, and L.J. Petit. 1990. Geographic Variation in Foraging Ecology of North American Insectivorous Birds. Studies in Avian Biology 13:254–263. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/Petit_et_al_1990_Geographic%20Variation%20in%20Foraging%20Ecology%20of%20North%20American%20Insectivorous%20Birds.pdf</a >

Pierson, E.D. and W.E. Rainey. 1998. Distribution, Status, and Management of Townsend’s Big-eared Bat (Corynorhinus townsendii) in California. Prepared for the State of California Resources Agency, Department of Fish and Game, Wildlife Management Division, Bird and Mammal Conservation Program. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/Pierson_Rainey_1998_Distribution,%20Status,%20and%20Management%20of%20Townsend%E2%80%99s%20Big-eared%20Bat%20(Corynorhinus%20townsendii)%20in%20California.pdf</a >

Pierson, E.D., W. E. Rainey, and C. Corben. 2006. Distribution and Status of Western Red Bats (Lasiurus blossevillii) in California. Sacramento, CA. Prepared for the State of California Resources Agency, Department of Fish and Game Habitat Conservation Planning Branch. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/Pierson_et_al_2006_Distribution%20and%20Status%20of%20Western%20Red%20Bats%20(Lasiurus%20blossevillii)%20in%20California.pdf</a >

Quinn, J. 2008. The Ecology of the American badger Taxidea taxus in California: Assessing Conservation Needs on Multiple Scales. PhD Thesis. University of California at Davis. Davis, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/Pierson_et_al_2006_Distribution%20and%20Status%20of%20Western%20Red%20Bats%20(Lasiurus%20blossevillii)%20in%20California.pdf</a >

Salganek, S. 2019. Autumn Roost Selection by Male Hoary Bats (Lasiurus cinereus) in Northern California. MS Thesis. Humboldt State University. Arcata, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/Salganek_2019_Autumn%20Roost%20Selection%20by%20Male%20Hoary%20Bats%20(Lasiurus%20cinereus).%20MS%20Thesis..pdf</a >

Shuford, W. D., and T. Gardali (eds.). 2008. California Bird Species of Special Concern: A Ranked Assessment of Species, Subspecies, and Distinct Populations of Birds of Immediate Conservation Concern in California. Studies of Western Birds No. 1. Western Field Ornithologists, Camarillo, CA, and California Department of Fish and Game, Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/Shuford_Gardali_2008_California%20Bird%20Species%20of%20Special%20Concern.pdf</a >

Smith, K. G., S. R. Wittenberg, R. B. Macwhirter, and K. L. Bildstein. 2020. Northern Harrier (Circus hudsonius), version 1.0. In Birds of the World (P. G. Rodewald, Editor). Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.norhar2.01</a >

Stebbins, R. C. 2003. Western Reptiles and Amphibians. Third Edition. New York, NY: Houghton Mifflin Company. Copyright protected. See introduction for more information Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/Stebbins_2003.pdf</a >

Szewczak, J.M., M.L. Morrison, and L.S. Harris. 2018. Townsend’s Big-Eared Bat Statewide Assessment. Prepared for the State of California Resources Agency, Department of Fish and Wildlife, Wildlife Branch. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/Szewczak%20et%20al_2018_Townsend’s%20big-eared%20bat%20statewide%20assessment.pdf</a >

The Xerces Society for Invertebrate Conservation. 2018. A Petition to the State of California Fish and Game Commission to List The Crotch Bumble Bee (Bombus crotchii), Franklin’s Bumble Bee (Bombus franklini), Suckley Cuckoo Bumble Bee (Bombus suckleyi), and Western Bumble Bee (Bombus occidentalis occidentalis) as Endangered under the California Endangered Species Act. Prepared for the California Fish and Game Commission. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/TXSIC_2018_A%20Petition%20to%20the%20Crotch%20Bumble%20Bee%20(Bombus%20crotchii),%20Franklin%E2%80%99s%20Bumble%20Bee%20(Bombus%20franklini),%20Suckley%20Cuckoo%20Bumble%20Bee%20(Bombus%20suckleyi),%20and%20Western%20Bumble%20Bee%20(Bombus%20occidentalis%20occidentalis)%20as.pdf</a >

Thomson, R. C., A. N. Wright, and H. B. Shaffer. 2016. California Amphibian and Reptile Species of Special Concern. University of California Press. Oakland, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/Thomson_etal_ARSSC_2016_optimized.pdf</a >

U.S. Fish and Wildlife Service. 2005. Recovery Plan for Vernal Pool Ecosystems of California and Southern Oregon. Region 1. December 15, 2005. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/USFWS_2005a_VP_RecoveryPlan_partial.pdf</a >

U.S. Fish and Wildlife Service. 2019. Pollinators. Featured Pollinator. Last updated June 17, 2019.

U.S. Fish and Wildlife Service. 2020. Monarch (Danaus plexippus) Species Status Assessment Report, Version 2.1. Available: https://ecos.fws.gov/ServCat/DownloadFile/191345</a >

U.S. Fish and Wildlife Service. 2021. IPaC Resource List for the Project area. Obtained from the Information for Planning and Consultation (IPaC) website: https://ecos.fws.gov/ipac/</a >

Western Association of Fish and Wildlife Agencies. 2019. Western Monarch Butterfly Conservation Plan, 2019-2069, Version 1.0. Available: https://wafwa.org/wpdm-package/western-monarch-butterfly-conservation-plan-2019-2069/#:~:text=This%20document%2C%20The%20Western%20Monarch,a%20viable%20western%20monarch%20population</a >. Copyright protected. See introduction for more information

Western Bat Working Group. 2017a. Species Matrix. Last revised: 2017. Available: http://wbwg.org/western-bat-species/</a >.

Western Bat Working Group. 2017b. Western Bat Species. Last revised: 2017. Available: http://wbwg.org/western-bat-species/</a >.

Williams, D. F. 1986. Mammalian Species of Special Concern in California. California Department of Fish and Game Report 86-1. California Department of Fish and Game, Sacramento, CA. 112 pages. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/Williams_1986_Mammalian%20Species%20of%20Concern%20in%20California.pdf</a >

Williams, P. H., R. W. Thorp, L. L. Richardson, and S. R. Colla. 2014. Bumble Bees of North America: An Identification Guide. Princeton University Press, Princeton. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/Williams_et_al_2014_An%20Identification%20Guide%20Bumble%20Bees%20of%20North%20America.pdf</a >

Zeiner, D. C., W. F. Laudenslayer, Jr., and K. E. Mayer (eds.). 1988. California’s Wildlife. Volume I: Amphibians and Reptiles. California Statewide Wildlife Habitat Relationships System. Sacramento, CA: California Department of Fish and Game. Copyright protected. See introduction for more information Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/Zeiner_et_al_1988.pdf</a >

Zeiner, D. C., W. F. Laudenslayer, Jr., and K. E. Mayer (eds.). 1990a. California’s Wildlife. Volume II: Birds. California Statewide Wildlife Habitat Relationships System. Sacramento, CA: California Department of Fish and Game. Copyright protected. See introduction for more information Available: Part 1: (https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/Zeiner_et_al_1990a_birds_part1_shorebirds_waterfowl.pdf</a >); Part 2: (https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/Zeiner_et_al_1990a_birds_part2_raptors.pdf</a >)

Zeiner, D. C., W. F. Laudenslayer, Jr., and K. E. Mayer (eds.). 1990b. California’s Wildlife. Volume III: Mammals. California Statewide Wildlife Habitat Relationships System. Sacramento, CA: California Department of Fish and Game. Copyright protected. See introduction for more information Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10A_WildlifeDatabaseResults/Zeiner_et_al_1990b_mammals.pdf</a >

Quirk, Corky. Executive Director. NorCal Bats. January 21, 2021—Email to Marieka Schrader, Senior Biologist, ICF, Sacramento, California.

Appendix 10B

Alvarez, J. A. 2006. Use of Artificial Basking Substrate to Detect and Monitor Pacific Pond Turtle (Emys marmorata). Western North America Naturalist. January 2006. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Alvarez_2006_Use%20of%20Artificial%20Basking%20Substrate%20to%20Detect%20and%20Monitor%20Pacific%20Pond%20Turtle%20(Emys%20marmorata).pdf</a >

Andersen, B. R., and K. Geluso. 2018. Roost Characteristics and Clustering Behavior of Western Red Bats (Lasiurus blossevillii) in Southwestern New Mexico. Western North American Journalist. Volume 78(2):174–183. Copyright protected. See introduction for more information

Anderson, D., R. Anderson, J. Dinsdale, and R. Schlorff. 2007. California Swainson’s Hawk Inventory: 2005–2007. Final report. Department of Fish and Game Resource Assessment Program, California Department of Fish and Game. Sacramento, CA, U.S.A. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Anderson_et_al_2007_California%20Swainson%E2%80%99s%20Hawk%20Inventory%202005%E2%80%932007.%20Final%20report.pdf</a >

Anthony, R. G., R. L. Knight, G. T. Allen, B. R. McClelland, and J. L. Hodges. 1982. Habitat Use by Nesting and Roosting Bald Eagles in the Pacific Northwest. Transactions of the North American Wildlife and Natural Resources Conference 47:332–342. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Anthony_et_al_1982_Habitat%20Use%20by%20Nesting%20and%20Roosting%20Bald%20Eagles%20in%20the%20Pacific%20Northwest.pdf</a >

Baker, M. D., M. J. Lacki, G. A. Falxa, P. L. Droppelman, and R. A. Slack. 2008. Habitat Use of Pallid Bats in Coniferous Forests of Northern California. Northwest Science, Volume 82(4): 269-275. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Baker_et_al_2008_Habitat%20Use%20of%20Pallid%20Bats%20in%20Coniferous%20Forests%20of%20Northern%20California.pdf</a >

Bank Swallow Technical Advisory Committee. 2013. Bank Swallow (Riparia riparia) Conservation Strategy for the Sacramento River Watershed, California. Version 1.0. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Bank%20Swallow%20Technical%20Advisory_2013_ConservationStrategyforBankSwallow.pdf</a >

Bechard, M. J., C. S. Houston, J. H. Saransola, and A. S. England. 2020. Swainson’s Hawk (Buteo swainsoni), version 1.0. In Birds of the World (A. F. Poole, Editor). Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.swahaw.01</a >. Copyright protected. See introduction for more information

Beedy, E. C., W. J. Hamilton, III, R. J. Meese, D. A. Airola, and P. Pyle. 2020. Tricolored Blackbird (Agelaius tricolor), version 1.0. In Birds of the World (P. G. Rodewald, Editor). Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.tribla.01</a >. Copyright protected. See introduction for more information

Beedy, E.C. and W.J. Hamilton III. 1997. Tricolored Blackbird Status Update and Management Guidelines. Jones & Stokes Assoc. Inc., Sacramento CA, Rep. 97-099. Prepared for U. S. Fish and Wildlife Service, Sacramento CA, and California Department of Fish and Game, Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Beedy%20&%20Hamilton%201997_ManagmentGuidelines.pdf</a >

Bobzien, S., and J. E. DiDonato. 2007. The Status of the California Tiger Salamander (Ambystoma californiense), California Red-legged Frog (Rana draytonii), Foothill Yellow-legged Frog (Rana boylii), and Other Aquatic Herpetofauna in the East Bay Regional Park District, California. East Bay Regional Park District, Oakland, CA.

Brenckle, J. F. 1936. The Migration of the Western Burrowing Owl. Bird-Banding 7:166–168. Copyright protected. See introduction for more information

Brown, C. J. 2000. North of the Delta Offstream Storage Investigation Progress Report. Appendix D: Fish Survey Summary. Assisted by W. Yip, G. Gorden, G. Low, and A. Scholzen. CALFED Bay-Delta Program. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Brown_CDFG_2000_North%20of%20the%20Delta%20Offstream%20Storage%20Investigation,%20Progress%20Report,%20Appendix%20D%20Fish%20Survey%20Summary.%20Draft.pdf</a >

Bruce, A. M., R. J. Anderson, and G. T. Allen. 1982. Observations of Golden Eagles Nesting in Western Washington. Raptor Research 16:132-134. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Bruce_et_al_1982_Observations%20of%20Golden%20Eagles%20Nesting%20in%20Western%20Washington.pdf</a >

Buehler, D. A. 2020. Bald Eagle (Haliaeetus leucocephalus), version 1.0. In Birds of the World (A. F. Poole and F. B. Gill, Editors). Introduction, Habitat, Diet and Foraging, and Breeding. Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.baleag.01</a >. Copyright protected. See introduction for more information

Bulger, J. B., N. J. Scott Jr., and R. B. Seymour. 2003. Terrestrial activity and conservation of adult California red-legged frogs Rana aurora draytonii in coastal forests and grasslands. Biological Conservation. 110: 85-95. Copyright protected. See introduction for more information Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Bulger_etal_2003_Terrestrial_activity_and_conservation_of_adult_Cal.pdf</a >

Bury, R. B. and D. J. Germano. 2008. Actinemys marmorata – Western Pond Turtle, Pacific Pond Turtle in Conservation Biology of Freshwater Turtles and Tortoises: A Compilation Project of the IUCN/SSC Tortoise and Freshwater Specialist Group. Chelonian Research Monographs, No. 5. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Bury_Germano_2008_Actinemys%20marmorata%20%E2%80%93%20Western%20Pond%20Turtle,%20Pacific%20Pond%20Turtle%20in%20Conservation%20Biology%20of%20Freshwater%20Turtles%20and%20Tortoises.pdf</a >

Calflora. 2021. The Calflora Database. Available: https://www.calflora.org/</a >.

California Department of Fish and Game. 1995. Five-Year Status Review: Bank Swallow (Riparia riparia). Prepared for the California Fish and Game Commission. Sacramento, California. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/CDFG_1995_Five-Year%20Status%20Review%20Bank%20Swallow%20(Riparia%20riparia).pdf</a >

California Department of Fish and Game. 1999. California Wildlife Habitat Relationships System. Bald Eagle Life History Account. California Interagency Wildlife Task Group. October. Available: https://www.wildlife.ca.gov/Data/CWHR/Life-History-and-Range</a >.

California Department of Fish and Game. 1999. California Wildlife Habitat Relationships System. Bank Swallow Life History Account. Life history accounts for species in the California Wildlife Habitat Relationships System were originally published in: Zeiner, D.C., W.F. Laudenslayer, Jr., K.E. Mayer, and M. White, eds. 1988-1990. California’s Wildlife. Vol. I-III. California Department of Fish and Game, Sacramento, California. Available: https://www.wildlife.ca.gov/Data/CWHR/Life-History-and-Range</a >.

California Department of Fish and Game. 2005. California Wildlife Habitat Relationships System. Silver-haired Bat Life History Account. Life history accounts for species in the California Wildlife Habitat Relationships System were originally published in: Zeiner, D.C., W.F. Laudenslayer, Jr., K.E. Mayer, and M. White, eds. 1988-1990. California’s Wildlife. Vol. I-III. California Department of Fish and Game, Sacramento, California. Available: https://www.wildlife.ca.gov/Data/CWHR/Life-History-and-Range</a >.

California Department of Fish and Game. 2005a. California Wildlife Habitat Relationships System. Yellow-breasted Chat Life History Account. Life history accounts for species in the California Wildlife Habitat Relationships System were originally published in: Zeiner, D. C., W. F. Laudenslayer, Jr., K. E. Mayer, and M. White, eds. 1988–1990. California’s Wildlife. Vol. I-III. California Department of Fish and Game, Sacramento, California. Available: https://www.wildlife.ca.gov/Data/CWHR/Life-History-and-Range. Available https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=2125&inline=1</a >.

California Department of Fish and Game. 2005b. California Wildlife Habitat Relationships System. Yellow Warbler Life History Account. Life history accounts for species in the California Wildlife Habitat Relationships System were originally published in: Zeiner, D. C., W. F. Laudenslayer, Jr., K. E. Mayer, and M. White, eds. 1988–1990. California’s Wildlife. Vol. I-III. California Department of Fish and Game, Sacramento, California. Available: https://www.wildlife.ca.gov/Data/CWHR/Life-History-and-Range</a >.

California Department of Fish and Wildlife. 2016. Five Year Status Review for Swainson’s Hawk (Buteo swainsoni). April 11, 2016. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/CDFW_2016_Five%20Year%20Status%20Review%20for%20Swainson%E2%80%99s%20Hawk%20(Buteo%20swainsoni).pdf</a >

California Department of Fish and Wildlife. 2018. A Status Review of the Tricolored Blackbird (Agelaius tricolor) in California. Report to the Fish and Game Commission. February 2018. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/CDFW_2018_A%20Status%20Review%20of%20the%20Tricolored%20Blackbird%20(Agelaius%20tricolor)%20in%20California.pdf</a >

California Department of Fish and Wildlife. 2021. California Natural Diversity Database, RareFind 5, January. Search for special-status wildlife within 5 miles of the study area, along the Sacramento River, and for selected species records in Glenn and Colusa Counties. Sacramento, CA. Copyright protected. See introduction for more information

Collinge, S. K., M. Holyoak, C. B. Barr, and T. J. Marty. 2001. Riparian habitat fragmentation and population persistence of the threatened valley elderberry longhorn beetle in central California. Biological Conservation 100:103–113. Copyright protected. See introduction for more information

Cook, L. F., and C.A Toft. 2005. Dynamics of Extinction: Population Decline in the Colonially Nesting Tricolored Blackbird Agelaius tricolor. Bird Conservation International 15:73–88. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Cook_Toft_2005_Dynamics%20of%20Extinction_Tricolored%20Blackbird%20Agelaius%20tricolor.pdf</a >

Cornell Lab of Ornithology. 2019. All About Birds. Last revised: 2019. Available: https://www.allaboutbirds.org/guide/Northern_Harrier/</a >.

Coulombe, H. N. 1971. Behavior and Population Ecology of the Burrowing Owl, Speotyto cunicularia, in the Imperial Valley of California. Condor 73:162–176. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Coulombe_1971_Behavior%20and%20Population%20Ecology%20of%20the%20Burrowing%20Owl.pdf</a >

Crawford, H. S., R. G. Hooper, and R. W. Titterington. 1981. Songbird Population Response to Silvicultural Practices in Central Appalachian Hardwoods. Journal of Wildlife Management 45 (3):680–692. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Crawford_et_al_1981_Songbird%20Population%20Response%20to%20Silvicultural%20Practices%20in%20Central%20Appalachian%20Hardwoods.pdf</a >

DeHaven, R.W., F.T. Crase, and P.D. Woronecki. 1975. Breeding Status of the Tricolored Blackbird, 1969-1972. California Fish and Game 61:166-180. https://tricolor.ice.ucdavis.edu/sites/g/files/dgvnsk3096/files/inline-files/DeHaven%20Crase%20Woronecki%201975%20Breeding%20Status.pdf</a >

Dettling, M. D., N. E. Seavy, C. A. Howell, and T. Gardali. 2015. Current Status of Western Yellow-Billed Cuckoo along the Sacramento and Feather Rivers, California. PLoS ONE. Vol. 10, No. 4. p. e0125198. https://doi.org/10.1371/journal.pone.0125198</a >.

Dettling, M.D., N.E. Seavy, and T. Gardali. 2014. Yellow-billed Cuckoo Survey Effort Along the Sacramento and Feather Rivers, 2012–2013. Final report to California Department of Fish and Wildlife (Grant #1182002). Point Blue Contribution #1988. https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=90522</a >

Dixon, K. L., R. E. Dixon, and J. E. Dixon. 1957. Natural History of the White-tailed Kite in San Diego County, California. Condor 59:156–165. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Dixon_et_al_1957_Natural%20History%20of%20the%20White-tailed%20Kite%20in%20San%20Diego%20County,%20California.pdf</a >

Driscoll, D. E. 2010. Protocol for Golden Eagle Occupancy, Reproduction, and Prey Population Assessment. American Eagle Research Institute, Apache Jct., AZ. 55pp. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Driscoll_2010_Protocol%20for%20Golden%20Eagle%20Occupancy,%20Reproduction,%20and%20Prey%20Population%20Assessment.pdf</a >

Dunk, J. R. 2020. White-tailed Kite (Elanus leucurus), version 1.0. In Birds of the World (A. F. Poole and F. B. Gill, Editors). Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.whtkit.01 Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Dunk_2020_White-tailed%20Kite%20(Elanus%20leucurus),%20version%201.0.%20In%20Birds%20of%20the%20World.pdf</a >

Eng, L., D. Belk, and C. H. Eriksen. 1990. Californian Anostraca: Distribution, Habitat, and Status. Journal of Crustacean Biology 10:247–277. Copyright protected. See introduction for more information Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Eng_1990_Anos.pdf</a >

England, A. S., J. A. Estep, and W. R. Holt. 1995. Nest-site Selection and Reproductive Performance of Urban-nesting Swainson’s Hawks in the Central Valley of California. Journal of Raptor Research 29:179–186. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/England_et_al_1995_Nest-site%20Selection%20and%20Reproductive%20Performance%20of%20Urban-nesting%20Swainson%E2%80%99s%20Hawks%20in%20the%20Central%20Valley%20of%20California.pdf</a >

Erichsen, A. L., S. K. Smallwood, A. M. Commandatore, B. W. Wilson, and M. D. Fry. 1996. White-tailed Kite Movement and Nesting Patterns in an Agricultural Landscape. Pp. 165-176 in D. M. Bird, D. E. Varland, and J. J. Negro (eds.), Raptors in Human Landscapes: Adaptations to Built and Cultivated Environments. Academic Press, London. Copyright protected. See introduction for more information Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Erichsen_etal_Pages%20from%20Bird_etal_1996_Raptors%20in%20Human%20Landscapes_%20Adaptations%20to%20Built%20and%20Cultivated%20Environments.pdf</a >

Erichsen, A. L., S. Smallwood, N. D. Ottum, and D. M. Fry. 1994. The White-tailed Kite: GIS Analysis of Habitat Selection in the Sacramento Valley, California with Implications for Conservation of Wildlife in Agricultural Landscapes. Journal of Raptor Research 28:46. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Erichsen_etal_1994_WIKIT_GIS_Analysis_Habitat_CentralValley_Journal_raptor%20research.pdf</a >

Eriksen, C. H., and D. Belk. 1999. Fairy Shrimps of California’s Puddles, Pools, and Playas. Mad River Press. Eureka, CA. Copyright protected. See introduction for more information Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Eriksen_Belk_1999.pdf</a >

Estep, J. A. 1984. Diurnal Raptor Eyrie Monitoring Program. California Department of Fish and Game, Nongame Wildlife Investigations. Project Report W-65-R-1, Job No. II-2.0. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Estep,%20Diurnal%20Raptor%20Eyrie%20Monitoring%20Program,%201984.pdf</a >

Estep, J. A. 1989. Biology, Movements and Habitat Relationships of the Swainson’s hawk in the Central Valley of California, 1986-87. Report for the California Department of Fish and Game, Nongame Bird and Mammal Sec. Rep. Copyright protected. See introduction for more information Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Estep_1989_Biology,%20movements,%20and%20habitat%20relationships%20of%20the%20Swainson’s%20hawk%20in%20the%20Central%20Valley%20of%20California.pdf</a >

Fellers, G. M., and P. M. Kleeman. 2007. California red-legged frog (Rana draytonii) Movement and Habitat Use: Implications for Conservation. Journal of Herpetology. 41 (2): 276-286. Copyright protected. See introduction for more information Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Fellers_%20Kleeman_2007_California%20red-legged%20frog%20(Rana%20draytonii)%20Movement%20and%20Habitat%20Use.pdf</a >

Gaines, D. 1974. Review of the Status of the Yellow-billed Cuckoo in California: Sacramento Valley Populations. Condor 76: 204-209. https://doi.org/10.2307/1366731</a >. Copyright protected. See introduction for more information

Garcia, D. 2009. Spatial and Temporal Patterns of the Bank Swallow on the Sacramento River. A Thesis Presented to the Faculty of California State University, Chico, Chico, CA. Available:https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Garcia_2009_Spatial%20and%20Temporal%20Patterns%20of%20the%20Bank%20Swallow%20on%20the%20Sacramento%20River.pdf</a >

Garrison, B. A. 1998. Bank Swallow (Riparia riparia). In The Riparian Bird Conservation Plan: A Strategy for Reversing the Decline of Riparian-Associated Birds in California. Available: https://sitesproject.org/wp-content/uploads/2023/11/Garrison_1998_Bank-Swallow-Riparia-riparia-Species-Account.pdf</a >.

Germano, D. J., and R. B. Bury. 2001. Western Pond Turtle (Clemmys marmorata) in the Central Valley of California: Status and Population Structure. 2001 Transaction of the Western Section of the Wildlife Society 37:22–36. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Germano_Bury_2001_Western%20Pond%20Turtle%20(Clemmys%20marmorata)%20in%20the%20Central%20Valley%20of%20California.pdf</a >

Girvetz, E. H., and S. E. Greco. 2009. Multi-Scale Predictive Habitat Suitability Modeling Based on Hierarchically Delineated Patches: An Example for Yellow-Billed Cuckoos Nesting in Riparian Forests, California, USA. Landscape Ecology. Vol. 24. pp. 1315–1329. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Girvetz_Greco_2009_Multiscale_habitat_suitablity%20model_cuckoo_Sac.pdf</a >

Graves, E.E., M. Holyoak, T. Rodd Kelsey, and R.J. Meese. 2013. Understanding the Contribution of Habitats and Regional Variation to Long-term Population Trends in Tricolored Blackbirds. Ecology and Evolution 3:2845-2858. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Graves_et_al_2013_Understanding%20the%20Contribution%20of%20Habitats%20and%20Regional%20Variation%20to%20Long-term%20Population%20Trends%20in%20Tricolored%20Blackbirds.pdf</a >

Grinnell, J., and A. H. Miller. 1944. The Distribution of the Birds of California. Pacific Coast Avifauna No. 27. Cooper Ornithological Club, Berkeley, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Grinnell_Miller_1944_The%20Distribution%20of%20the%20Birds%20of%20California.pdf</a >

Halterman, M., M. J. Johnson, J. A. Holmes, and S. A. Laymon. 2015. A Natural History Summary and Survey Protocol for the Western Distinct Population Segment of the Yellow-Billed Cuckoo. U.S. Fish and Wildlife Techniques and Methods. 45 pp. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Halterman_et_al_2015_A%20Natural%20History%20Summary%20and%20Survey%20Protocol%20for%20the%20Western%20Distinct%20Population%20Segment%20of%20the%20Yellow-Billed%20Cuckoo.pdf</a >

Hamilton, W.J., III. 2004. Tricolored Blackbird Management Recommendations and 2005 Survey Priorities. Report prepared for California Resource Management Institute. 15 pp. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Hamilton_2004_Tricolored%20Blackbird%20Management%20Recommendations%20and%202005%20Survey%20Priorities.pdf</a >

Hanes, T. and L. Stromberg. 1998. Hydrology of Vernal Pools on Non-volcanic Soils in the Sacramento Valley. Pages 38–49 in C. W. Witham, E. T. Bauder, D. Belk, W. R. Ferren, Jr., and R. Ornduff (eds.). Ecology, Conservation, and Management of Vernal Pool Ecosystems—Proceedings from a 1996 Conference. California Native Plant Society, Sacramento, California. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Hanes_Stromberg_1998_Hydrology%20of%20Vernal%20Pools%20on%20Non-volcanic%20Soils%20in%20the%20Sacramento%20Valley.pdf</a >

Hatfield, R. G., and G. LeBuhn. 2007. Patch and Landscape Factors Shape Community Assemblage of Bumble Bees, Bombus spp. (Hymenoptera: Apidae), in Montane Meadows. Biological Conservation 139:150–158. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Hatfield_LeBuhn_2007_Patch%20and%20Landscape%20Factors%20Shape%20Community%20Assemblage%20of%20Bumble%20Bees,%20Bombus%20spp.%20(Hymenoptera%20Apidae),%20in%20Montane%20Meadows.pdf</a >

Hayes, M. P., and M. R. Jennings. 1988. Habitat correlates of distribution of the California red-legged frog (Rana aurora draytonii) and the foothill yellow-legged frog (Rana boylii): Implications for management. Pp. 144-158. In Proceedings of the symposium on the management of amphibians, reptiles, and small mammals in North America. R. Sarzo, K.E. Severson, and D.R. Patton, (technical coordinators). U.S.D.A. Forest Service General Technical Report RM-166. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Hayes_Jennings_1988_Habitat%20correlates%20of%20distribution%20of%20the%20California%20redlegged%20frog%20(Rana%20aurora%20draytonii)%20and%20the%20foothill%20yellow-legged%20frog%20(Rana%20boylii).pdf</a >

Helm, B. 1998. Biogeography of Eight Large Branchiopods Endemic to California. Pages 124–139 in C. W. Witham, E. T. Bauder, D. Belk, W. R. Ferren, Jr., and R. Ornduff (eds.), Ecology, Conservation, and Management of Vernal Pool Ecosystems —Proceedings from a 1996 Conference. California Native Plant Society. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Helm_1998_branchiopods_biogeography.pdf</a >

Holland, D. C. 1994. The Western Pond Turtle: Habitat and History. Final Report. DOE/BP-62137-1. Portland, OR: Bonneville Power Administration, U.S. Dept. of Energy, and Wildlife Diversity Program, Oregon Department of Fish and Wildlife. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Holland_1994_The%20Western%20Pond%20Turtle%20Habitat%20and%20History.%20Final%20Report.pdf</a >

Hunt, W. G., R. E. Jackman, T. L. Hunt, D. E. Driscoll, and L. Culp. 1999. A Population Study of Golden Eagles in the Altamont Pass Wind Resource Area; Population Trend Analysis 1994–1997. Predatory Bird Research Group, University of California, Santa Cruz, CA, USA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Hunt_et_al_1999_A%20Population%20Study%20of%20Golden%20Eagles%20in%20the%20Altamont%20Pass%20Wind%20Resource%20Area.pdf</a >

Jackman, R. E., W. G. Hunt, J. M. Jenkins, and P. J. Detrich. 1999. Prey of Nesting Bald Eagles in Northern California. Journal of Raptor Research 33:87–96. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Jackman_et_al_1999_Prey%20of%20Nesting%20Bald%20Eagles%20in%20Northern%20California.pdf</a >

James, P. C. 1992. Urban-nesting of Swainson’s Hawks in Saskatchewan. Condor 94:773–774. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/James_1992_Urban-nesting%20of%20Swainson%E2%80%99s%20Hawks%20in%20Saskatchewan.pdf</a >

Jennings, M. R. and M. P. Hayes. 1994. Amphibian and Reptile Species of Special Concern in California. California Department of Fish and Game, Inland Fisheries Division, Rancho Cordova, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Jennings_Hayes_1994_Amphibian_reptile_species_of_Special_Concern_in_CA.pdf</a >

Johnston, D. W. and E. P. Odum. 1956. Breeding Bird Population in Relation to Plant Succession on the Piedmont of Georgia. Ecology 37:50–62.

Katzner, T. E., M. N. Kochert, K. Steenhof, C. L. McIntyre, E. H. Craig, and T. A. Miller. 2020. Golden Eagle (Aquila chrysaetos), version 2.0. In Birds of the World (P. G. Rodewald and B. K. Keeney, Editors). Introduction, Habitat, Diet and Foraging, and Breeding. Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.goleag.02</a >. Copyright protected. See introduction for more information

Klute, D. S., L. W. Ayers, M. T. Green, W. H. Howe, S. L. Jones, J. A. Shaffer, S. R. Sheffield, and T. S. Zimmerman. 2003. Status Assessment and Conservation Plan for the Western Burrowing Owl in the United States. U.S. Department of Interior, Fish and Wildlife Service, Biological Technical Publication FWS/BTP-R6001-2003, Washington, D.C. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Klute_et_al_2003_Status%20Assessment%20and%20Conservation%20Plan%20for%20the%20Western%20Burrowing%20Owl%20in%20the%20United%20States.pdf</a >

Koch, J. B., J. P. Strange, and P. Williams. 2012. Bumble Bees of the Western United States. Pollinator Partnership; San Francisco, CA Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Koch_et_al_2012_Bumble%20Bees%20of%20the%20Western%20United%20States.pdf</a >

Kroodsma, R. L. 1982. Bird Community Ecology on Power-line Corridors in East Tennessee. Biological Conservation 23:79–94. Copyright protected. See introduction for more information

Lay, C. 2008. The Status of the American Badger in the San Francisco Bay Area. MS Thesis. San Jose State University. San Jose, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Lay_2008_The%20Status%20of%20the%20American%20Badger%20in%20the%20San%20Francisco%20Bay%20Area.%20MS%20Thesis.pdf</a >

Laymon, S. A. 1998. Yellow-billed Cuckoo (Coccycus americanus). In The Riparian Bird Conservation Plan: A Strategy for Reversing the Decline of Riparian-associated Birds in California. California Partners in Flight. https://sitesproject.org/wp-content/uploads/2023/11/Laymon_1998_PRBO_Yellow-billed-Cuckoo-Coccycus-americanus.pdf</a >.

Lehman, R. N. 1979. A Survey of Selected Habitat Features of 95 Bald Eagle Nest Sites in California. October. Wildlife Management Branch Administrative Report 79-1. California Department of Fish and Game. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Lehman_1979_A%20survey%20of%20selected%20habitat%20features%20of%2095%20bald%20eagle%20nest%20sites%20in%20California.pdf</a >

Lovich, J., and K. Meyer. 2002. The Western Pond Turtle (Clemmys marmorata) in the Mojave River, California, USA: highly adapted survivor or tenuous relict? Journal of Zoology London. 256:537–545. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Lovich_Meyer_2002_The%20Western%20Pond%20Turtle%20(Clemmys%20marmorata)%20in%20the%20Mojave%20River,%20California,%20USA.pdf</a >

Mayta, Sheri. Senior Biologist. GPA Consulting, Ventura, California. March 5, 2021 — Telephone call with Marieka Schrader, Senior Biologist, ICF, Sacramento, California.

Meese, R.J. 2017. Results of the 2017 Tricolored Blackbird Statewide Survey. University of California, Davis. Department of Fish and Wildlife, Wildlife Branch, Nongame Wildlife Program Report 2017-04, Sacramento, California. 27 pp. + appendices. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Meese_2017_Results%20of%20the%202017%20Tricolored%20Blackbird%20Statewide%20Survey.pdf</a >

Melhop, P. and J. F. Lynch. 1986. Bird/Habitat Relationships Along a Successional Gradient in the Maryland Coastal Plain. American Midland Naturalist 116:225–239. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Melhop_Lynch_1986_Bird%20Habitat%20Relationships%20Along%20a%20Successional%20Gradient%20in%20the%20Maryland%20Coastal%20Plain.pdf</a >

Mendelsohn, J. M. and F. M. Jaksic. 1989. Hunting behaviour of Black-shouldered Kites in the Americas, Europe and Australia. Ostrich 60:1–12. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Mendelsohn_Jaksic_1989_Hunting%20behaviour_Kites_%20in_Americas_Europe_Africa_Australia.pdf</a >

Morey, S. R. 2005. Spea hammondii. In Lannoo, M.J. (Ed.).: Amphibian Declines: The Conservation Status of United States Species. University of California Press, Berkeley, pp.514–517. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Morey_in%20Lanoo_2005_spadefoot.pdf</a >

Morey, S. R., and D. N. Reznick. 2004. The Relationship between Habitat Permanence and Larval Development in California Spadefoot Toads: Field and Laboratory Comparisons of Developmental Plasticity. Oikos 104:172–190. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Morey_Reznick_2004_The_relationship_between_habitat_permanence_and_la.pdf</a >

Neff, J. A. 1937. Nesting Distribution of the Tricolored Red-wing. Condor 39:61–81. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Neff_1937_Nesting%20Distribution%20of%20the%20Tricolored%20Red-wing.pdf</a >

Orians, G.H. 1961. The Ecology of Blackbird (Agelaius) Social Systems. Ecological Monographs 31:285-312 Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Orians_1961_The%20Ecology%20of%20Blackbird%20(Agelaius)%20Social%20Systems.pdf</a >

Pierson, E. D., and W.E. Rainey. 1998. Distribution, Status, and Management of Townsend’s Big-eared Bat (Corynorhinus townsendii) in California. Prepared for the State of California Resources Agency, Department of Fish and Game, Wildlife Management Division, Bird and Mammal Conservation Program. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Pierson_Rainey_1998_Distribution,%20Status,%20and%20Management%20of%20Townsend%E2%80%99s%20Big-eared%20Bat%20(Corynorhinus%20townsendii)%20in%20California.pdf</a >

Pierson, E. D., W. E. Rainey, and C. Corben. 2006. Distribution and Status of Western Red Bats (Lasiurus blossevillii) in California. Sacramento, CA. Prepared for the State of California Resources Agency, Department of Fish and Game Habitat Conservation Planning Branch. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Pierson_et_al_2006_Distribution%20and%20Status%20of%20Western%20Red%20Bats%20(Lasiurus%20blossevillii)%20in%20California.pdf</a >

Pilliod, D. S., J. L. Welty, and R. Stafford. 2013. Terrestrial Movement Patterns of Western Pond Turtles (Actinemys marmorata) in Central California. Herpetological Conservation and Biology 8(1):207–221. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Pilliod_etal_2013_Terrestrial%20Movement%20Patterns%20of%20Western%20Pond%20Turtles%20(Actinemys%20marmorata)%20in%20Central%20California.pdf</a >

Plumpton, D. L. and R. S. Lutz. 1993. Nesting Habitat Use by Burrowing Owls in Colorado. Journal of Raptor Research 27:175–179. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Plumpton_Lutz_1993_Nesting%20Habitat%20Use%20by%20Burrowing%20Owls%20in%20Colorado.pdf</a >

Poulin, R. G., L. D. Todd, E. A. Haug, B. A. Millsap, and M. S. Martell. 2020. Burrowing Owl (Athene cunicularia), version 1.0. In Birds of the World (A. F. Poole, Editor). Introduction, Habitat, Diet and Foraging, and Breeding. Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.burowl.01</a >. Copyright protected. See introduction for more information

Purcell, K. L., E. L. McGregor, and K Calderala. 2017. Effects of Drought on Western Pond Turtle Survival and Movement Patterns. Journal of Fish and Wildlife Management 8(1):1–13. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_10B_WildlifeHabitatModelsMethods/Purcell_etal_2017_Effects%20of%20Drought%20on%20Western%20Pond%20Turtle%20Survival%20and%20Movement%20Patterns.pdf</a >

Quinn, J. 2008. The Ecology of the American badger Taxidea taxus in California: Assessing Conservation Needs on Multiple Scales. PhD Thesis. University of California at Davis. Davis, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_10B_WildlifeHabitatModelsMethods/Quinn_2008_EcologyofAmericanBadger.pdf</a >

Quirk, Corky. Executive Director. NorCal Bats. January 21, 2021 — Email to Marieka Schrader, Senior Biologist, ICF, Sacramento, California.

Rogers, C. 2001. Revision of the Nearctic Lepidurus (Notostraca). Journal of Crustacean Biology 21(4):991–1006. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_10B_WildlifeHabitatModelsMethods/Rogers_2001_Revision%20of%20the%20Nearctic%20Lepidurus%20(Notostraca).pdf</a >

Salganek, S. 2019. Autumn Roost Selection by Male Hoary Bats (Lasiurus cinereus). MS Thesis. Humboldt State University. Arcata, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_10B_WildlifeHabitatModelsMethods/Salganek_2019_Autumn%20Roost%20Selection%20by%20Male%20Hoary%20Bats%20(Lasiurus%20cinereus).%20MS%20Thesis..pdf</a >

Schlorff, R. and P. H. Bloom. 1984. Importance of Riparian Systems to Nesting Swainson’s Hawks in the Central Valley of California. Pp. 612–618 in California Riparian Systems: Ecology, Conservation, and Productive Management. Berkeley: University of California Press. Edited by R. E. Warner and K. M. Hendrix. Berkeley: University of California Press. http://ark.cdlib.org/ark:/13030/ft1c6003wp/</a >

Semlitsch, R. D., and J. R. Bodie. 2003. Biological Criteria for Buffer Zones around Wetlands and Riparian Habitats for Amphibians and Reptiles. Conservation Biology 17:1219–1228. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_10B_WildlifeHabitatModelsMethods/Semlitsch_Bodie_2003_Biological%20Criteria%20for%20Buffer%20Zones%20around%20Wetlands%20and%20Riparian%20Habitats%20for%20Amphibians%20and%20Reptiles.pdf</a >

Shuford, W. D. and T. Gardali (eds.). 2008. California Bird Species of Special Concern: A Ranked Assessment of Species, Subspecies, and Distinct Populations of Birds of Immediate Conservation Concern in California. Studies of Western Birds 1. Western Field Ornithologists, Camarillo, California, and California Department of Fish and Game, Sacramento, California. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_10B_WildlifeHabitatModelsMethods/Shuford_Gardali_2008_California%20Bird%20Species%20of%20Special%20Concern.pdf</a >

Shuford, W. D., and T. Gardali (eds.). 2008. California Bird Species of Special Concern: A Ranked Assessment of Species, Subspecies, and Distinct Populations of Birds of Immediate Conservation Concern in California. Studies of Western Birds No. 1. Western Field Ornithologists, Camarillo, CA, and California Department of Fish and Game, Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_10B_WildlifeHabitatModelsMethods/Shuford_Gardali_2008_California%20Bird%20Species%20of%20Special%20Concern.pdf</a >

Spinks, P. Q., G. B. Pauly, J. J. Crayon, and H. B Shaffer. 2003. Survival of the Western Pond Turtle (Emys marmorata) in an Urban Environment. Biological Conservation 113:257–267. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_10B_WildlifeHabitatModelsMethods/Spinks_etal_2003_Survival%20of%20the%20Western%20Pond%20Turtle%20(Emys%20marmorata)%20in%20an%20Urban%20Environment.pdf</a >

Stebbins, R. C. 2003. A Field Guide to Western Reptiles and Amphibians. Third edition. Houghton Mifflin Company, New York, New York. 533 pp. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Stebbins_2003.pdf?csf=1&web=1&e=dYKmDt</a >

Storer, T. L. 1925. A Synopsis of the Amphibia of California. University of California Publications in Zoology 27:1–342. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_10B_WildlifeHabitatModelsMethods/Storer_1925_A%20Synopsis%20of%20the%20Amphibia%20of%20California.pdf</a >

Swolgaard, C., K. Reeves, and D. Bell. 2008. Foraging by Swainson’s Hawks in a Vineyard-dominated Landscape. Journal of Raptor Research 42(3):188–196. http://www.bioone.org/doi/abs/10.3356/JRR-07-15.1</a >

Szewczak, J. M., M. L. Morrison, and L. S. Harris. 2018. Townsend’s Big-Eared Bat Statewide Assessment. Prepared for the State of California Resources Agency, Department of Fish and Wildlife, Wildlife Branch. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_10B_WildlifeHabitatModelsMethods/Szewczak%20et%20al_2018_Townsend’s%20big-eared%20bat%20statewide%20assessment.pdf</a >

Talley, T. S., D. Wright, and M. Holyoak. 2006. Assistance with the 5-year review of the valley elderberry longhorn beetle (Desmocerus californicus dimorphus). Report to the U.S. Fish and Wildlife Service, Sacramento Fish and Wildlife Office, Sacramento, California. 74 pp. + appendix. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_10B_WildlifeHabitatModelsMethods/Talley%20et%20al_2006_VELB_5yr_review_Assistance.pdf</a >

Talley, T. S., E. Fleishman, M. Holyoak, D. D. Murphy, and A. Ballard. 2007. Rethinking a rare species conservation strategy in an urban landscape: The case of the valley elderberry longhorn beetle. Biological Conservation 135:21–32. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_10B_WildlifeHabitatModelsMethods/Talley%20et%20al_2007_RareSpeciesConservation_VELB.pdf</a >

Tatarian, P. J. 2008. Movement Patterns of California Red-legged Frogs (Rana draytonii) in an Inland Environment. Herpetological Conservation and Biology 3(2):155-169. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_10B_WildlifeHabitatModelsMethods/Tatarian_2008_Movement%20Patterns%20of%20California%20Red-legged%20Frogs%20(Rana%20draytonii)%20in%20an%20Inland%20Environment.pdf</a >

The Xerces Society for Invertebrate Conservation. 2018. A Petition to the State of California Fish and Game Commission to List the Crotch Bumble Bee (Bombus crotchii), Franklin’s Bumble Bee (Bombus franklini), Suckley Cuckoo Bumble Bee (Bombus suckleyi), and Western Bumble Bee (Bombus occidentalis occidentalis) as Endangered Under the California Endangered Species Act. October 16. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_10B_WildlifeHabitatModelsMethods/TXSIC_2018_A%20Petition%20to%20the%20Crotch%20Bumble%20Bee%20(Bombus%20crotchii),%20Franklin%E2%80%99s%20Bumble%20Bee%20(Bombus%20franklini),%20Suckley%20Cuckoo%20Bumble%20Bee%20(Bombus%20suckleyi),%20and%20Western%20Bumble%20Bee%20(Bombus%20occidentalis%20occidentalis)%20as.pdf</a >

Thomson, R. C., A. N. Wright, and H. B. Shaffer. 2016. California Amphibian and Reptile Species of Special Concern. University of California Press, Oakland, California. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_10B_WildlifeHabitatModelsMethods/Thomson_etal_ARSSC_2016_optimized.pdf?csf=1&web=1&e=akrpVS</a >

Thomson, R. C., A. N. Wright, and H. B. Shaffer. 2016. California Amphibian and Reptile Species of Special Concern. University of California Press. Oakland. CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_10B_WildlifeHabitatModelsMethods/Thomson_etal_ARSSC_2016_optimized.pdf?csf=1&web=1&e=akrpVS</a >

Thomson, R. C., P. Q. Spinks, and H. B. Shaffer. 2010. Distribution and Abundance of Invasive Red-eared Sliders (Trachemys scripta elegans) in California’s Sacramento River Basin and Possible Impacts on Native Western Pond Turtles (Emys marmorata). Chelonian Conservation and Biology 9(2):297–302. Copyright protected. See introduction for more information

Thorp, R. W., D. S. Horning, Jr., and L. L. Dunning. 1983. Bumble Bees and Cuckoo Bumble Bees of California. Bulletin of the California Insect Survey 23:1–79. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_10B_WildlifeHabitatModelsMethods/Thorp_et_al_1983_Bumble%20Bees%20and%20Cuckoo%20Bumble%20Bees%20of%20California.pdf?csf=1&web=1&e=H9Tcga</a >

U.S. Fish and Wildlife Service. 1997. Programmatic Formal Consultation for U.S. Army Corps of Engineers 404 Permitted Projects with Relatively Small Effects on the Giant Garter Snake within Butte, Colusa, Glenn, Fresno, Merced, Sacramento, San Joaquin, Solano, Stanislaus, Sutter and Yolo Counties, California. November 13. Prepared for Mr. Art Champ Chief, Regulatory Branch Department of the Army, Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_10B_WildlifeHabitatModelsMethods/USFWS_1997_Programmatic%20Formal%20Consultation%20for%20U.S.%20Army%20Corps%20of%20Engineers%20404%20Permitted%20Projects%20with%20Relatively%20Small%20Effects%20on%20the%20Giant%20Garter%20Snake.pdf?csf=1&web=1&e=U4IWeB</a >

U.S. Fish and Wildlife Service. 1999. Draft Recovery Plan for the Giant Garter Snake (Thamnophis gigas). Portland, OR. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_10B_WildlifeHabitatModelsMethods/USFWS_1999_Draft%20Recovery%20Plan%20For%20The%20Giant%20Garter%20Snake.pdf</a >

U.S. Fish and Wildlife Service. 2002. Recovery Plan for the California Red-legged Frog (Rana aurora draytonii). Region 1. U.S. Fish and Wildlife Service. Portland, OR. May 28, 2002. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/USFWS_2002_RecoveryPlan_CRLF.pdf</a >

U.S. Fish and Wildlie Service. 2005. Recovery Plan for Venal Pool Ecosystems of California and Southern Oregon. Region 1. December 15, 2005.

U.S. Fish and Wildlife Service. 2005. Recovery Plan for Vernal Pool Ecosystems of California and Southern Oregon. December 15. Region 1: Portland, OR. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_10B_WildlifeHabitatModelsMethods/USFWS_2005a_VP_RecoveryPlan_partial%20(1).pdf</a >

U.S. Fish and Wildlife Service. 2006. Giant Garter Snake (Thamnophis gigas). 5-Year Review: Summary and Evaluation. U.S. Fish and Wildlife Service, Sacramento Fish and Wildlife Office, Sacramento, California. September 2006. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_10B_WildlifeHabitatModelsMethods/USFWS_2006_GGS_5yr_Review.pdf?csf=1&web=1&e=HYnoOP</a >

U.S. Fish and Wildlife Service. 2012. Conservancy Fairy Shrimp (Branchinecta conservatio) 5-Year Review: Summary and Evaluation. June. Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/USFWS_2012_Conservancy%20FS_5_Yr_Review_062012.pdf</a >

U.S. Fish and Wildlife Service. 2017. Framework for Assessing Impacts to the Valley Elderberry Longhorn Beetle (Desmocerus californicus dimorphus). U.S. Fish and Wildlife Service; Sacramento, California. 28 pp. May 2017. https://sitesproject.org/wp-content/uploads/2023/11/USFWS_2017a_VELB_Framework.pdf</a >

U.S. Fish and Wildlife Service. 2017. Recovery Plan for the Giant Garter Snake (Thamnophis gigas). U.S. Fish and Wildlife Service, Pacific Southwest Region, Sacramento, California. vii + 71 pp. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/gwd/Exh.%20GWD-13,%20Giant%20Garter%20Snake%20Recovery%20Plan%20(2017).pdf</a >

U.S. Fish and Wildlife Service. 2019. Pollinators. Featured Pollinator. Last updated June 17, 2019. Available: https://www.fws.gov/pollinators/Features/Monarch_Butterfly.html</a >.

U.S. Fish and Wildlife Service. 2019. Revised Recovery Plan for Valley Elderberry Longhorn Beetle. U.S. Fish and Wildlife Service, Pacific Southwest Region, Sacramento, California. iii + 18 pp. https://www.fws.gov/endangered/species/recovery-plans.html</a >

U.S. Fish and Wildlife Service. 2019. Species Assessment and Listing Priority Assignment Form for Yellow-billed Cuckoo (Coccyzus americanus). September 10, 2019. https://ecos.fws.gov/ecp/species/3911</a >

U.S. Fish and Wildlife Service. 2019. Species Status Assessment for the Tricolored Blackbird (Agelaius tricolor). Version 1.1 February 2019. https://ecos.fws.gov/ServCat/DownloadFile/166302</a >

U.S. Fish and Wildlife Service. 2020. Monarch (Danaus plexippus) Species Status Assessment Report, Version 2.1. https://ecos.fws.gov/ServCat/DownloadFile/191345</a >

Western Association of Fish and Wildlife Agencies. 2019. Western Monarch Butterfly Conservation Plan, 2019-2069, Version 1.0. Available: https://wafwa.org/wpdm-package/western-monarch-butterfly-conservation-plan-2019-2069/?ind=1602171186650&filename=WAFWA_Monarch_Conservation_Plan.pdf&wpdmdl=13048&refresh=6047de6b6209b1615322731</a >

Western Bat Working Group. 2017. Western Bat Species. Last revised: 2017 Available: http://wbwg.org/western-bat-species/</a >.

Western Bat Working Group. 2017. Western Bat Species. Last revised: 2017. Available: http://wbwg.org/western-bat-species/</a >.

Williams, D. F. 1986. Mammalian Species of Concern in California. California Department of Fish and Game Report 86-1. California Department of Fish and Game, Sacramento, CA. 112 pages. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Williams_1986_Mammalian%20Species%20of%20Concern%20in%20California.pdf?csf=1&web=1&e=zuj8PA</a >

Williams, P. H., R. W. Thorp, L. L. Richardson, and S. R. Colla. 2014. The Bumble Bees of North America: An Identification Guide. Princeton University Press, Princeton. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Williams_et_al_2014_An%20Identification%20Guide%20Bumble%20Bees%20of%20North%20America.pdf?csf=1&web=1&e=aZc9di</a >

Woodbridge, B. 1998. Swainson’s Hawk (Buteo swainsoni). In The Riparian Bird Conservation Plan: A Strategy for Reversing the Decline of Rriparian-associated Birds in California. California Partners in Flight. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/ECOS/ecos_29.pdf</a >

Zeiner, D. C, W. F. Laundenslayer, Jr., K. E. Mayer, and M. White (eds.). 1990. California’s Wildlife, Volume II. Birds. California Statewide Wildlife Habitat Relationship Systems. California Department of Fish and Game, Sacramento, California.

Zeiner, D. C., W. F. Laudenslayer, Jr., and K. E. Mayer (eds.). 1990. California’s Wildlife. Volume II: Birds. California Statewide Wildlife Habitat Relationships System. Sacramento, CA: California Department of Fish and Game.

Zeiner, D. C., W. F. Laudenslayer, Jr., and K. E. Mayer (eds.). 1990. California’s Wildlife. Volume III: Mammals. California Statewide Wildlife Habitat Relationships System. Sacramento, CA: California Department of Fish and Game. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App10B_WildlifeHabitatModelsMethods/Zeiner_et_al_1990b_mammals.pdf?csf=1&web=1&e=Lpcy2V</a >

Appendix 11A

Aasen, G. 2011. Fish Salvage at the State Water Project’s and Central Valley Project’s Fish Facilities during the 2010 Water Year. IEP Newsletter. Vol. 24, Number 1, Spring.

Aasen, G. 2012. Fish Salvage at the State Water Project’s and Central Valley Project’s Fish Facilities during the 2011 Water Year. IEP Newsletter. Vol. 25, Number 1, Fall/Winter.

Adams, P. B., C. B. Grimes, J. E. Hightower, S. T. Lindley, and M. L. Moser. 2002. Status Review for North American Green Sturgeon, Acipenser medirostris. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Adams_etal_2002_Status_Review_for_North_American_Green_Sturgeon_Ac.pdf?csf=1&web=1&e=4gQWFW</a >

Adams, P. B., C. B. Grimes, J. E. Hightower, S. T. Lindley, M. L. Moser, and M. J. Parsley. 2007. Population Status of North American Green Sturgeon, Acipenser medirostris. Environmental Biology of Fishes 79:339–356. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Adams_etal_2007_GreenSturgeonPopulationStatus.pdf?csf=1&web=1&e=I5way8</a >

Ahearn, D. S., J. H. Viers, J. F. Mount, and R. A. Dahlgren. 2006. Priming the Productivity Pump: Flood Pulse Driven Trends in Suspended Algal Biomass Distribution Across a Restored Floodplain. Freshwater Biology 51:1417–1433. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Ahearn_2006_Priming%20the%20Productivity%20Pump.pdf?csf=1&web=1&e=EfPYM6</a >

Ainsley, S., J. Pombo, T. Wright, and E. Loury. 2013. Pilot Study: The Feasibility of Using Fyke Traps in the Lower San Joaquin River to Capture Adult Striped Bass. FISHBIO, Oakdale, CA. July. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Ainsley_et_al_2013_Pilot%20Study%20The%20Feasibility%20of%20Using%20Fyke%20Traps%20in%20the%20Lower%20San%20Joaquin%20River%20to%20Capture%20Adult%20Striped%20Bass.pdf?csf=1&web=1&e=RCe90T</a >

Anderson, J. 2018. Using River Temperature to Optimize Fish Incubation Metabolism and Survival: A Case for Mechanistic Models. Researchgate Preprint. 10.1101/257154. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Anderson_2018_Using%20River%20Temperature%20to%20Optimize%20Fish%20Incubation%20Metabolism%20and%20Survival.pdf?csf=1&web=1&e=z7J2Mm

Azat, J. 2012. Grandtab 2012.04.23: California Central Valley Chinook Population Database Report. California Department of Fish and Game, Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Azat_2012_GrandTab.2023.06.26.pdf?csf=1&web=1&e=11fiSC</a >

Azat, J. 2019. CDFW GrandTab. 2022.07.20. http://calfish.org/ProgramsData/Species/CDFWAnadromousResourceAssessment.aspx</a >

Azat, J. 2021. GrandTab 2021.06.30: California Central Valley Chinook Population Database Report. California Department of Fish and Wildlife, Sacramento, CA.

Azat, J. 2022. GrandTab.2022.07.07 California Central Valley Chinook Escapement Database Report. California Department of Fish and Wildlife, Sacramento, CA.

Baerwald, M. R., B. M. Schreier, G. Schumer, and B. May. 2012. Detection of Threatened Delta Smelt in the Gut Contents of the Invasive Mississippi Silverside in the San Francisco Estuary using TaqMan Assays. Transactions of the American Fisheries Society 141(6):1600–1607. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Baerwald_et_al_2012_Detection%20of%20Threatened%20Delta%20Smelt%20in%20the%20Gut%20Contents%20of%20the%20Invasive%20Mississippi%20Silverside%20in%20the%20San%20Francisco%20Estuary%20using%20TaqMan%20Assays.pdf?csf=1&web=1&e=oqHpLE</a >

Barnett-Johnson, R., C. B. Grimes, C. F. Royer, and C. J. Donohoe. 2007. Identifying the Contribution of Wild and Hatchery Chinook Salmon (Oncorhynchus tshawytscha) to the Ocean Fishery Using Otolith Microstructure as Natural Tags. Canadian Journal of Fisheries and Aquatic Sciences 64(12):1683–1692. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Barnett-Johnson_etal_2007_Identifying%20the%20Contribution%20of%20Wild%20and%20Hatchery%20Chinook%20Salmon%20(Oncorhynchus%20tshawytscha)%20to%20the%20Ocean%20Fishery%20Using%20Otolith%20Microstructure%20as%20Natural%20Tags.pdf?csf=1&web=1&e=kYuCkd</a >

Baumsteiger, J., and P. B. Moyle. 2019. A Reappraisal of the California Roach/Hitch (Cypriniformes, Cyprinidae, Hesperoleucus/Lavinia) Species Complex. Zootaxa 4543(2):221–240. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Baumsteiger_Moyle_2019_A%20Reappraisal%20of%20the%20California%20Roach%20Hitch%20(Cypriniformes,%20Cyprinidae,%20HesperoleucusLavinia)%20Species%20Complex.pdf?csf=1&web=1&e=e2RT0Z</a >

Baxter, J. L. 1967. Summary of Biological Information on the Northern Anchovy Engraulis mordax Girard. California Cooperative Oceanic Fisheries Investigations Reports 11:110–116. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Baxter_1967_Summary%20of%20Biological%20Information%20on%20the%20Northern%20Anchovy%20Engraulis%20mordax%20Girard.pdf?csf=1&web=1&e=H0Aqbf</a >

Baxter, R. D. 1999. Status of Splittail in California. California Fish and Game 85:28–30.

Baxter, R., K. Hieb, S. DeLeón, K. Fleming, and J. Orsi. 1999. Report on the 1980-1995 Fish, Shrimp, and Crab Sampling in the San Francisco Estuary, California. Interagency Ecological Program for the Sacramento-San Joaquin Estuary, Technical Report 63, California Department of Fish and Game, Stockton, CA, 503 pp.

Baxter, R., R. Breuer, L. Brown, L. Conroy, F. Feyrer, S. Fong, K. Gehrts, L. Grimaldo, B. Herbold, P. Hrodey, A. Mueller-Solger, T. Sommer, and K. Souza. 2010. Pelagic Organism Decline Work Plan and Synthesis of Results. Interagency Ecological Program for the San Francisco Estuary. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Baxter_et_al_2010_Pelagic%20Organism%20Decline%20Work%20Plan%20and%20Synthesis%20of%20Results.pdf?csf=1&web=1&e=acNMSy</a >

Beamesderfer, R., M. Simpson, and G. Kopp. 2007. Use of Life History Information in a Population Model for Sacramento Green Sturgeon. Environmental Biology of Fishes 79:315–337. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Beamesderfer_etal_2007_Use%20of%20Life%20History%20Information%20in%20a%20Population%20Model%20for%20Sacramento%20Green%20Sturgeon.pdf?csf=1&web=1&e=dLLF1Y</a >

Beamish, R. J. 1980. Adult Biology of the River Lamprey (Lampetra ayresi) and the Pacific Lamprey (Lampetra tridentata) from the Pacific Coast of Canada. Canadian Journal of Fish and Aquatic Science 53:2898–2908. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Beamish_1980_Adult%20Biology%20of%20the%20River%20Lamprey%20(Lampetra%20ayresi)%20and%20the%20Pacific%20Lamprey%20(Lampetra%20tridentata)%20from%20the%20Pacific%20Coast%20of%20Canada.pdf?csf=1&web=1&e=f2Rb0L</a >

Bell, M. C. 1986. Fisheries Handbook of Engineering Requirements and Biological Criteria. U.S. Army Corps of Engineers, Fish Passage Development and Evaluation Program, Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Bell_1986_Fisheries%20Handbook%20of%20Engineering%20Requirements%20and%20Biological%20Criteria.pdf?csf=1&web=1&e=erNfBY</a >

Bennett, W. A. 2005. Critical Assessment of the Delta Smelt Population in the San Francisco Estuary, California. San Francisco Estuary and Watershed Science 3(2). Available: https://escholarship.org/uc/item/0725n5vk</a >.

Bennett, W. A., and J. R. Burau. 2015. Riders on the Storm: Selective Tidal Movements Facilitate the Spawning Migration of Threatened Delta Smelt in the San Francisco Estuary. Estuaries and Coasts 38(3):826–835. Doi: http://dx.doi.org/10.1007/s12237-0149877-3</a >. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Bennett_Burau_2015_Riders%20on%20the%20Storm.pdf?csf=1&web=1&e=Dr1vwJ</a >

Bennett, W. A., and P. B. Moyle. 1996. Where Have All The Fishes Gone? Interactive Factors Producing Fish Declines in the Sacramento-San Joaquin Estuary. In San Francisco Bay: the Ecosystem, ed. J. T. Hollibaugh, 519–542. American Association for the Advancement of Science, Pacific Division, San Francisco, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/bennett_moyle_1996_where%20have%20all%20the%20fish%20gone.pdf?csf=1&web=1&e=7Z9KYy</a >

Bennett, W. A., W. J. Kimmerer, and J. R. Burau. 2002. Plasticity in Vertical Migration by Native and Exotic Estuarine Fishes in a Dynamic Low-Salinity Zone. Limnology and Oceanography 47(5):1496–1507. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Bennett_etal_2002_Plasticity%20in%20vertical%20migration%20by%20native%20and%20exotic%20estuarine%20fishes%20in%20a.pdf?csf=1&web=1&e=vP8G71</a >

Benson, R. L., S. Turo, and B. W. McCovey. 2007. Migration and Movement Patterns of Green Sturgeon (Acipenser medirostris) in the Klamath and Trinity Rivers, California, USA. Environmental Biology of Fishes 79:269–279. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Benson_etal_2007_MigrationmovementsofGreenSturgeonintheKlamathandTrinity.pdf?csf=1&web=1&e=lkfj3Q</a >

Bergen, D. R., and L. D. Jacobson. 2001. Northern Anchovy. In California’s Living Marine Resources: A Status Report, edited by W. S. Leet, C. M. Dewees, R. Klingbeil, and E. J. Larson, 303–305. California Department of Fish and Game. Publication SG01-11. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Bergen_Jacobson_2001_Northern%20Anchovy_In%20California%E2%80%99s%20Living%20Marine%20Resources%20A%20Status%20Report.pdf?csf=1&web=1&e=Ip6DuY</a >

Bever, A. J., M. L. MacWilliams, B. Herbold, L. R. Brown and F. V. Feyrer. 2016. Linking Hydrodynamic Complexity to Delta Smelt (Hypomesus transpacificus) Distribution in the San Francisco Estuary, USA. San Francisco Estuary and Watershed Science 14(1). Available: https://escholarship.org/uc/item/2x91q0fr</a >.

Bever, A. J., M. L. MacWilliams, and D. K. Fullerton. 2018. Influence of an Observed Decadal Decline in Wind Speed on Turbidity in the San Francisco Estuary. Estuaries and Coasts 41:1943–1967. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Bever_et_al_2018_Influence%20of%20an%20Observed%20Decadal%20Decline%20in%20Wind%20Speed%20on%20Turbidity%20in%20the%20San%20Francisco%20Estuary.pdf?csf=1&web=1&e=bsazu9</a >

Blackburn, S. E., M. L. Gingras, J. DuBois, Z. J. Jackson, and M. C. Quist. 2019. Population Dynamics and Evaluation of Management Scenarios for White Sturgeon in the Sacramento–San Joaquin River Basin. North American Journal of Fisheries Management 39(5):896–912. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Blackburn_etal_2019_Population%20Dynamics%20and%20Evaluation%20of%20Management%20Scenarios%20for%20White%20Sturgeon%20in%20the%20Sacramento%E2%80%93San%20Joaquin%20River%20Basin.pdf?csf=1&web=1&e=0MBlq7</a >

Bottom, D. L., K. K. Jones, and M. J. Herring. 1984. Fishes of the Columbia River Estuary. Columbia River Estuary Data Development Program. Oregon Department of Fish and Wildlife, Portland, OR. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Bottom_etal_1984_Fishes%20of%20the%20Columbia%20River%20Estuary.pdf?csf=1&web=1&e=X7abl0</a >

Boughton, D. A. and A. S. Pike. 2013. Floodplain Rehabilitation as a Hedge against Hydroclimatic Uncertainty in a Migration Corridor of Threatened Steelhead. Conservation Biology 27(6):1158–1168. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Boughton_Pike_2013_Floodplain%20Rehabilitation%20as%20a%20Hedge%20against%20Hydroclimatic%20Uncertainty%20in%20a%20Migration%20Corridor%20of%20Threatened%20Steelhead.pdf?csf=1&web=1&e=HDFrYY</a >

Bouley, P., and W. J. Kimmerer. 2006. Ecology of a Highly Abundant, Introduced Cyclopoid Copepod in a Temperate Estuary. Marine Ecology Progress Series 324:219–228. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Bouley_Kimmerer_2006_Ecology%20of%20a%20Highly%20Abundant,%20Introduced%20Cyclopoid%20Copepod%20in%20a%20Temperate%20Estuary.pdf?csf=1&web=1&e=8ZckLu</a >

Bourez, W. 2011. Subject: Relating Delta Smelt Index to X2 position, Delta Flows, and Water Use. Memorandum from MBK Engineers to the Northern California Water Association. December 15. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Bourez_2011_Subject%20Relating%20Delta%20Smelt%20Index%20to%20X2%20position,%20Delta%20Flows,%20and%20Water%20Use.pdf?csf=1&web=1&e=as0uKb</a >

Bowen, M., S. Siegfried, C. Liston, L. Hess, and C. Karp. 1998. Fish Collections and Secondary Louver Efficiency at the Tracy Fish Collection Facility, October 1993 to September 1995. Tracy Fish Collection Facility Studies, Volume 7. Bureau of Reclamation. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Bowen_etal_1998_Fish%20Collections%20and%20Secondary%20Louver%20Efficiency%20at%20the%20Tracy%20Fish%20Collection%20Facility,%20October%201993%20to%20September%201995.pdf?csf=1&web=1&e=vKTZbW</a >

Brandes, P. L., and J. S. McLain. 2001. Juvenile Chinook Salmon Abundance, Distribution, and Survival in the Sacramento-San Joaquin Estuary. In Fish Bulletin 179(2): Contributions to the Biology of the Central Valley Salmonids, edited by R. L. Brown, 39–136. Sacramento, CA: California Department of Fish and Game. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Brandes_McLain_2001_Juvenile%20Chinook%20Salmon%20Abundance,%20Distribution,%20and%20Survival%20in%20the%20Sacramento-San%20Joaquin%20Estuary.pdf?csf=1&web=1&e=aKJubq</a >

Brandl, S., Schreier, B., Conrad, J.L., May, B. and Baerwald, M. 2021. Enumerating Predation on Chinook Salmon, Delta Smelt, and Other San Francisco Estuary Fishes Using Genetics. North American Journal of Fisheries Management 41(4):1053–1065. https://afspubs.onlinelibrary.wiley.com/doi/full/10.1002/nafm.10582</a >

Brooks, M., E. Fleishman, L. Brown, P. Lehman, I. Werner, N. Scholz, C. Mitchelmore, J. Lovvorn, M. Johnson, D. Schlenk, S. van Drunick, J. Drever, D. Stoms, A. Parker, and R. Dugdale. 2012. Life Histories, Salinity Zones, and Sublethal Contributions of Contaminants to Pelagic Fish Declines Illustrated with a Case Study of San Francisco Estuary, California, USA. Estuaries and Coasts 35(2):603–621. Doi: http://dx.doi.org/10.1007/s12237-011-9459-6</a >. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/BrooksEtAl_2012_LifeHist-sal-zones.pdf?csf=1&web=1&e=VQgAww</a >

Brown, L. R. 2000. Fish Communities and Their Associations with Environmental Variables, Lower San Joaquin River Drainage, California. Environmental Biology of Fishes 57(3):251–269. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Brown_2000_Fish%20Communities%20and%20Their%20Associations%20with%20Environmental%20Variables,%20Lower%20San%20Joaquin%20River%20Drainage,%20California.pdf?csf=1&web=1&e=u8uDjI</a >

Brown, K. 2007. Evidence of Spawning by Green Sturgeon, Acipenser medirostris, in the Upper Sacramento River, California. Environmental Biology of Fishes 79:297–303. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Brown_2007_Evidence%20of%20Spawning%20by%20Green%20Sturgeon,%20Acipenser%20medirostris,%20in%20the%20Upper%20Sacramento%20River,%20California.pdf?csf=1&web=1&e=ZewlrT</a >

Brown, L. R. and D. Michniuk. 2007. Littoral Fish Assemblages of the Alien dominated Sacramento–San Joaquin Delta, California 1980–1983 and 2001–2003. Estuaries and Coasts 30:186–200. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Brown%26Michniuk_2007_LittoralFish.pdf?csf=1&web=1&e=bqHZfQ</a >

Brown, L. R., and P. B. Moyle. 1993. Distribution, Ecology, and Status of Fishes of the San Joaquin River Drainage, California. California Fish and Game 79:96–113.

Brown, L. R., W. A. Bennett, R. W. Wagner, T. Morgan-King, N. Knowles, F. Feyrer, D. H. Schoelhamer, M.T. Stacey, and M. Dettinger. 2013. Implications for future survival of delta smelt from four climate change scenarios for the Sacramento-San Joaquin Delta, California. Estuaries and Coasts. DOI 10.1007/s12237-013-9585-4. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Brown_etal_2013_Implications%20for%20future%20survival%20of%20dealta%20smelt.pdf?csf=1&web=1&e=Q5chPY</a >

Brown L. R., L. M. Komoroske, R. W. Wagner, T. Morgan-King, J. T. May, R. E. Connon, N. A. Fangue. 2016. Coupled Downscaled Climate Models and Ecophysiological Metrics Forecast Habitat Compression for an Endangered Estuarine Fish: PLOS ONE 11(1):e0146724. Doi: http://dx.doi.org/10.1371/journal.pone.0146724</a >.

Buchanan, R. A., and J. R. Skalski. 2020. Relating Survival of Fall-Run Chinook Salmon through the San Joaquin Delta to River Flow. Environmental Biology of Fishes. Doi: https://doi.org/10.1007/s10641-019-00918-y</a >.

Buchanan, R. A., J. R. Skalski, P. L. Brandes, and A. Fuller. 2013. Route Use and Survival of Juvenile Chinook Salmon through the San Joaquin River Delta. North American Journal of Fisheries Management 33(1):216–229. https://www.baydeltalive.com/assets/c5f67c17ca965d44d6e39c3bc257f5c8/application/pdf/Buchanan_et_al._2013_online.pdf</a >

Buchanan, R., P. Brandes, M. Marshall, J. S. Foott, J. Ingram, D. LaPlante, and J. Israel. 2015. 2012 South Delta Chinook Salmon Survival Study. Ed: P. Brandes, U.S. Fish and Wildlife Service. 145 p. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Buchanan_etal_2015_2012%20South%20Delta%20Chinook%20Salmon%20Survival%20Study.pdf?csf=1&web=1&e=C3fBDW</a >

Buchanan R. A., P. L. Brandes, and J. R. Skalski. 2018. Survival of Juvenile Fall-Run Chinook Salmon through the San Joaquin River Delta, California, 2010–2015. North American Journal of Fisheries Management 38(3):663–679. Available: https://doi.org/10.1002/nafm.10063</a >.

Bureau of Reclamation. 2008. Biological Assessment on the Continued Long-Term Operations of the Central Valley Project and the State Water Project. Sacramento, CA: Mid-Pacific Region. https://www.usbr.gov/mp/cvo/OCAP/sep08_docs/FrontMatter.pdf</a >

Bureau of Reclamation. 2012. Stanislaus River Focus Group Meeting October 10, 2012, Handouts.

Bureau of Reclamation. 2014. Upper San Joaquin River Basin Storage Investigation, Draft Environmental Impact Statement. https://www.usbr.gov/mp/nepa/includes/documentShow.php?Doc_ID=19081</a >

Bureau of Reclamation. 2019. Reinitiation of Consultation on the Coordinated Long-Term Operation of the Central Valley Project and State Water Project. Final Biological Assessment. January. Mid-Pacific Region, Bureau of Reclamation. https://www.usbr.gov/mp/bdo/docs/ba-final-biological-assessment.pdf</a >

Bureau of Reclamation and California Department of Water Resources. 2015. Biological Review for Endangered Species Act Compliance with the WY 2015 Drought Contingency Plan April through September Project Description. Prepared for State Water Resources Control Board. Available: http://www.waterboards.ca.gov/waterrights/water_issues/programs/drought/docs/tucp/2015/apr2015_req032415.pdf</a >. Accessed: November 3, 2020.

Bureau of Reclamation and Trinity County. 2006. Indian Creek Rehabilitation Site: Trinity River Mile 93.7 to 96.5. Revised Environmental Assessment/Recirculated Partial Draft Environmental Impact Report. November 14.

California Data Exchange Center. 2023. Chronological Reconstructed Sacramento and San Joaquin Valley Water Year Hydrologic Classification Indices. Available: https://cdec.water.ca.gov/reportapp/javareports?name=WSIHIST</a >.

California Department of Fish and Game. 1980. California Trout, Salmon, and Warmwater Fish Production and Costs, 1978–79. Inland Fisheries Administrative Report No. 80-1. Inland Fisheries.

California Department of Fish and Game. 1986. Instream Flow Requirements of the Fish and Wildlife Resources of the Lower American River, Sacramento County, California. California Department of Fish and Game Stream Evaluation Report No. 86-1. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/CDFG_1986_Instream%20Flow%20Requirements%20of%20the%20Fish%20and%20Wildlife%20Resources%20of%20the%20Lower%20American%20River,%20Sacramento%20County,%20California.pdf?csf=1&web=1&e=uUtHxe</a >

California Department of Fish and Game. 1998. A Status Review of the Spring-Run Chinook Salmon (Oncorhynchus tshawytscha) in the Sacramento River Drainage. Candidate Species Status Report 98-01. Fish and Game Commission, Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/CDFG_1998_A%20Status%20Review%20of%20the%20Spring-Run%20Chinook%20Salmon%20(Oncorhynchus%20tshawytscha)%20in%20the%20Sacramento%20River%20Drainage.pdf?csf=1&web=1&e=wbVMyO</a >

California Department of Fish and Game. 2001a. Final Report on Anadromous Salmonid Fish Hatcheries in California. Joint Hatchery Review Committee, National Marine Fisheries Service Southwest Region, California Department of Fish and Game. December 3, 2001. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11A_Aquatic_Spp_Life_Hist/CDFG_2001_Final%20Report%20on%20Anadromous%20Salmonid%20Fish%20Hatcheries.pdf?csf=1&web=1&e=hlnBU9</a >

California Department of Fish and Game. 2001b. California’s Living Marine Resources: A Status Report, Northern Anchovy. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=34306</a >.

California Department of Fish and Game. 2002. California Department of Fish and Game Comments to NMFS Regarding Green Sturgeon Listing. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/nmfs/spprt_docs/nmfs_exh4_dfg_2002.pdf</a >.

California Department of Fish and Game. 2004. Sacramento River Winter-run Chinook Salmon. Biennial Report 2002 – 2003. Prepared for the Fish and Game Commission. June 2004. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/CDFG_2004_Sacramento%20River%20Winter-run%20Chinook%20Salmon.%20Biennial%20Report%202002%20%E2%80%93%202003.pdf?csf=1&web=1&e=UFaYMz</a >

California Department of Fish and Game. 2007. San Joaquin River fishery and aquatic resources inventory. Cooperative Agreement 03FC203052. Final Report, September 2003– September 2005. CDFG San Joaquin Valley -Southern Sierra Region. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/CDFG_2007_Sturgeon%20Card%20Complete%20Draft%20Version%205.pdf?csf=1&web=1&e=RDSpuc</a >

California Department of Fish and Game. 2008. 2007 Sturgeon Fishing Report Card: Preliminary Data Report. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/CDFG_2009%20Sturgeon%20Card%20Complete%20Draft%20Version%201.pdf?csf=1&web=1&e=pGUobZ</a >

California Department of Fish and Game. 2009a. A Status Review of the Longfin Smelt (Spirinchus thaleichthys) in California. Report to the Fish and Game Commission. January 23. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/CDFG_2009a_A%20Status%20Review%20of%20the%20Longfin%20Smelt%20(Spirinchus%20thaleichthys)%20in%20California.pdf?csf=1&web=1&e=Bxg39U</a >

California Department of Fish and Game. 2009b. 2008 Sturgeon Fishing Report Card: Preliminary Data Report. June 17. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/CDFG_2009%20Sturgeon%20Card%20Complete%20Draft%20Version%201.pdf?csf=1&web=1&e=rdPfDv</a >

California Department of Fish and Game. 2010. 2009 Sturgeon Fishing Report Card: Preliminary Data Report. March 29. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/CDFG_2010%20Sturgeon%20Card%20Complete%20Draft%20Version%201.pdf?csf=1&web=1&e=LUPl71</a >

California Department of Fish and Game. 2011. 2010 Sturgeon Fishing Report Card: Preliminary Data Report. April 20. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/CDFG_2011%20Sturgeon%20Card%20Complete%20Draft%20Version%201.pdf?csf=1&web=1&e=EPVNxE</a >

California Department of Fish and Game. 2012a. Central Valley Chinook Salmon In-River Escapement Monitoring Plan. Fisheries Branch Administrative Report Number: 2012-1. January. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/CDFG_2012a_Central%20Valley%20Chinook%20Salmon%20In-River%20Escapement.pdf?csf=1&web=1&e=xMAelW</a >

California Department of Fish and Game. 2012b. 2011 Sturgeon Fishing Report Card: Preliminary Data Report. March 23. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/CDFW_2012%20Sturgeon%20Card%20Complete%20Draft%20Version%201.pdf?csf=1&web=1&e=A50zAK</a >

California Department of Fish and Wildlife. 2013. 2012 Sturgeon Fishing Report Card: Preliminary Data Report. July 12. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/CDFW_2012%20Sturgeon%20Card%20Complete%20Draft%20Version%201.pdf?csf=1&web=1&e=vm8hvq</a >

California Department of Fish and Wildlife. 2014. 2013 Sturgeon Fishing Report Card: Preliminary Data Report. May 8. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/CDFW_2013%20Sturgeon%20Card%20Complete%20Draft%20Version%201.pdf?csf=1&web=1&e=Syxi4U</a >

California Department of Fish and Wildlife. 2018. Historical Anadromous Fish Releases from CDFW Hatcheries. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=156895</a >. Accessed: June 12, 2020.

California Department of Fish and Wildlife. 2023. 20-mm Survey. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11A_Aquatic_Spp_Life_Hist/CDFW_2023_20-mm%20Survey.pdf?csf=1&web=1&e=1X0iCD</a >

California Department of Fish and Wildlife. n.d. Spring Kodiak Survey: Egg Stages—Classification of Male Delta Smelt According to Mager (1996) and Mager (Personal Communication) and Classification of Female Delta Smelt According to Mager (1996) and Mager (Personal Communication). Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/CDFW_n.d._Spring%20Kodiak%20Survey%20Egg%20Stages%E2%80%94Classification%20of%20Male%20Delta%20Smelt%20According%20to%20Mager%20(1996)%20and%20Mager%20(Personal%20Communication)%20and%20Classification%20of%20Female%20Delta%20Smelt%20According%20to%20Mager.pdf?csf=1&web=1&e=6pacPy</a >

California Department of Water Resources. 2003. Fish Distribution in the Feather River downstream of Thermalito diversion dam to the Confluence with the Sacramento River. SP-F3.2 Task 1 and F21 Task 2. Draft Report. Oroville Facilities Relicensing FERC Project No. 2100.

California Department of Water Resources. 2004. Relationship Assessment of Fish/Wildlife Management and Recreation. Final. R-4. Oroville Facilities Relicensing FERC Project No. 2100. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/CDWR_2004_Relationship%20Assessment%20of%20FishWildlife%20Management%20and%20Recreation.pdf?csf=1&web=1&e=vKetg3</a >

California Department of Water Resources. 2007. Oroville Facilities Relicensing FERC Project No. 2100 Draft Environmental Impact Report. May. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/CDWR_2007_Oroville.pdf?csf=1&web=1&e=bHKBHX</a >

California Department of Water Resources. 2019. Incidental Take Permit Application for Long-term Operation of the California State Water Project. December. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/CDWR_2019_Incidental%20Take%20Permit%20Application%20for%20Long-term%20Operation%20of%20the%20California%20State%20Water%20Project.pdf?csf=1&web=1&e=JtggKv</a >

California Department of Water Resources. 2020. Final Environmental Impact Report for Long-term Operation of the California State Water Project. State Clearinghouse No. 2019049121. March. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/CDWR_2020_Final%20Environmental%20Impact%20Report%20for%20Long-term%20Operation%20of%20the%20California%20State%20Water%20Project.%20State%20Clearinghouse%20No.%202019049121.pdf?csf=1&web=1&e=EiBQXj</a >

California Department of Water Resources and Bureau of Reclamation. 2012. Yolo Bypass Salmonid Habitat Restoration and Fish Passage Implementation Plan, Long-Term Operation of the Central Valley Project and State Water Project Biological Opinion Reasonable and Prudent Alternative Actions I.6.1 and I.7. Pages 1–140. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/CDWR_BoR_2012_Yolo%20Bypass%20Salmonid%20Habitat%20Restoration%20and%20Fish%20Passage%20Implementation%20Plan,%20Long-Term%20Operation%20of%20the%20Central%20Valley%20Project%20and%20State%20Water%20Project%20Biological%20Opinion%20Reasonable%20and%20Prudent%20Alternative%20Actions.pdf</a >

California Department of Water Resources and Bureau of Reclamation. 2017. Yolo Bypass Salmonid Habitat Restoration and Fish Passage. Draft Environmental Impact Statement/Environmental Impact Report. December. https://www.usbr.gov/mp/nepa/nepa_project_details.php?Project_ID=30484</a >

California Department of Water Resources, Bureau of Reclamation, U.S. Fish and Wildlife Service, and National Marine Fisheries Service. 2013. Environmental Impact Report/ Environmental Impact Statement for the Bay Delta Conservation Plan. Draft. December. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11A_Aquatic_Spp_Life_Hist/CDWR%20et%20al_BDCP_2013_Draft%20EIR-EIS/2013%20BDCP%20EIR-EIS</a >

California Hatchery Scientific Review Group. 2012. California Hatchery Review Report. Prepared for the U.S. Fish and Wildlife Service and Pacific States Marine Fisheries Commission. June. https://swfsc-publications.fisheries.noaa.gov/publications/CR/2012/2012California.pdf</a >

California Natural Diversity Database. 2023. State and Federally Listed Endangered and Threatened Animals of California. January 2023. California Department of Fish and Wildlife. Sacramento, CA. https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&ved=2ahUKEwiNv_-ykLqBAxWmJ0QIHUlACD0QFnoECBAQAQ&url=https%3A%2F%2Fnrm.dfg.ca.gov%2FFileHandler.ashx%3FDocumentID%3D109405&usg=AOvVaw1Qte3Nj6rI0FNir2EV6HbE&opi=89978449</a >

Carlson, S. M., and W. H. Satterthwaite. 2011. Weakened Portfolio Effect in a Collapsed Salmon Population Complex. Canadian Journal of Fisheries and Aquatic Sciences 68(9):1579–589. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Carlson_Satterthwaite_2011_Weakened%20Portfolio%20Effect%20in%20a%20Collapsed%20Salmon%20Population%20Complex.pdf</a >

Cavallo, B., P. Gaskill, J. Melgo, and S. C. Zeug. 2015. Predicting Juvenile Chinook Salmon Routing in Riverine and Tidal Channels of a Freshwater Estuary. Environmental Biology of Fishes 98(6):1571–1582. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Cavallo_2015_Predicting%20Juvenile%20Chinook%20Salmon%20Routing%20in%20Riverine%20and%20Tidal%20Channels%20of%20a%20Freshwater%20Estuary.pdf?csf=1&web=1&e=sucGCL</a >

Cayan, D. R., M. Tyree, M. D. Dettinger, H. Hidalgo, T. Das, E. Maurer, P. D. Bromirski, N. Graham, and R. E. Flick. 2009. Climate Change Scenarios and Sea Level Rise Estimates for California – 2008 Climate Change Scenarios Assessment – Final Report. California Energy Commission, PIER Report CEC500-2009-014-F. https://escholarship.org/content/qt8vh4m2qz/qt8vh4m2qz.pdf</a >

Cech, J. J., S. J. Mitchell, and T. E. Wragg. 1984. Comparative Growth of Juvenile White Sturgeon and Striped Bass: Effects of Temperature and Hypoxia. Estuaries 7:12–18.

Chapman, E. D., E. A. Miller, G. P. Singer, A. R. Hearn, M. J. Thomas, W. N. Brostoff, P. E. LaCivita, and A. P. Klimley. 2019. Spatiotemporal Occurrence of Green Sturgeon at Dredging and Placement Sites in the San Francisco Estuary. Environmental Biology of Fishes 102:27–40. https://www.researchgate.net/publication/330106995_Spatiotemporal_occurrence_of_green_sturgeon_at_dredging_and_placement_sites_in_the_San_Francisco_estuary</a >

Clark, F. N., and J. B. Phillips. 1952. The Northern Anchovy (Engraulis mordax) in the California fishery. California Fish and Game 38(2):189–207. https://escholarship.org/content/qt1536j1nz/qt1536j1nz.pdf?t=lnqwjp</a >

Clear Creek Technical Team. 2018. Annual Report for the Coordinated Long-Term Operations Biological Opinion. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626314.pdf</a >

Clemens, B. J., M. G. Mesa, R. J. Magie, D. A. Young, and C. B. Schreck. 2012. Pre-spawning Migration of Adult Pacific Lamprey, Entosphenus Tridentatus, in the Willamette River, Oregon, U.S.A. Environmental Biology of Fishes 93:245–254. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Clemens_etal_2012_Pre-spawning%20Migration%20of%20Adult%20Pacific%20Lamprey,%20Entosphenus%20Tridentatus,%20in%20the%20Willamette%20River,%20Oregon,%20U.S.A..pdf?csf=1&web=1&e=bBxA0Y</a >

Clemento, A. J., E. D. Crandall, J. C. Garza, E. C. Anderson. 2014. Evaluation of a Single Nucleotide Polymorphism Baseline for Genetic Stock Identification of Chinook Salmon (Oncorhynchus tshawytscha) in the California Current Large Marine Ecosystem. Fishery Bulletin 112(2-3):112–130. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11A_Aquatic_Spp_Life_Hist/Clemento%20et%20al_2014_Evaluation%20of%20a%20Single%20Nucleotide%20Polymorphism%20Baseline.pdf?csf=1&web=1&e=9jgtUp</a >

Cloern, J. E., Morinaka, N. Brown, R. L., Cayan, D., Dettinger, M. D., Morgan, T. L., Schoellhammer, D. H., Stacey, M. T., van der Wegen, M., Wagner, R. W., and A. D. Jassby. 2011. Projected Evolution of California’s San Francisco Bay-Delta-River System in a Century of Climate Change. PLOS ONE 6(9):e24465. DOI: 10.371/journal.pone.0024465. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Cloern_etal_2011_Projected%20Evolution%20of%20California%E2%80%99s%20San%20Francisco%20Bay-Delta-River%20System%20in%20a%20Century%20of%20Climate%20Change.pdf?csf=1&web=1&e=PusyH1</a >

Columbia Basin Research, University of Washington. 2022. SacPAS CDFW GrandTab Adult Escapement. Available: http://www.cbr.washington.edu/sacramento/data/query_adult_grandtab.html</a >. Accessed: August 25, 2022.

Conrad, J. L., A. J. Bibian, K. L. Weinersmith, D. De Carion, M. J. Young, P. Crain, E. L. Hestir, M. J. Santos, and A. Sih. 2016. Novel Species Interactions in a Highly Modified Estuary: Association of Largemouth Bass with Brazilian Waterweed Egeria densa. Transactions of the American Fisheries Society 145(2):249–263. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/_Ch11_AquaticBiologicalResources/Conrad_etal_2016_Novel_Species_Interactions-LMBass-Egeria.pdf</a >

Crain, P. K., and P. B. Moyle. 2011. Biology, History, Status and Conservation of Sacramento Perch, Archoplites interruptus: A Review. San Francisco Estuary and Watershed Science 9(1). Available: https://escholarship.org/uc/item/8st5g6df</a >.

Damon, L. J., S. B. Slater, R. D. Baxter, and R. W. Fujimura. 2016. Fecundity and Reproductive Potential of Wild Female Delta Smelt in the Upper San Francisco Estuary, California. California Fish and Game 102(4):188–210. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=141865&inline</a >.

del Rosario, R. B., Y. J. Redler, K. Newman, P. L. Brandes, T. Sommer, K. Reece, and R. Vincik. 2013. Migration Patterns of Juvenile Winter-Run-Sized Chinook Salmon (Oncorhynchus tshawytscha) through the Sacramento–San Joaquin Delta. San Francisco Estuary and Watershed Science 11(1). Available: https://escholarship.org/uc/item/36d88128</a >.

Delta Operations for Salmonids and Sturgeon Technical Working Group. 2017. Annual Report of Activities October 1, 2016 to September 30, 2017. West Coast Regional Office, NOAA Fisheries, Portland, OR. https://media.fisheries.noaa.gov/2022-01/wy2017-doss-annual-report.pdf</a >

Delta Operations for Salmonids and Sturgeon Technical Working Group. 2018. Annual Report of Activities October 1, 2017 to September 30, 2018. West Coast Regional Office, NOAA Fisheries, Portland, OR. https://cawaterlibrary.net/wp-content/uploads/2020/06/Final_WY2018_DOSS_Annual_Report_plus_Appendices.pdf</a >

Demetras, N. J., D. D. Huff, C. J. Michel, J. M. Smith, G. R. Cutter, S. A. Hayes, and S. T. Lindley. 2016. Development of Underwater Recorders to Quantify Predation of Juvenile Chinook Salmon (Oncorhynchus tshawytscha) in a River Environment. Fishery Bulletin (114):179–185. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Demetras_etal_2020_ReportedvesselstrikeasasourceofmortalityofWhiteSturgeon.pdf?csf=1&web=1&e=wnerN9</a >

Demetras, N. J., B. A. Helwig, and A. S. McHuron. 2020. Reported Vessel Strike as a Source of Mortality of White Sturgeon in San Francisco Bay. California Fish and Wildlife 106(1):59–65.

Dettinger, M. D. 2005. From Climate-Change Spaghetti to Climate-Change Distributions for 21st Century California. San Francisco Estuary and Watershed Science 3(1). Available: https://escholarship.org/uc/item/2pg6c039</a >.

Di Lorenzo, E., K. M. Cobb, J. C. Furtado, N. Schneider, B. T. Anderson, A. Bracco, M. A. Alexander, and D. J. Vimont. 2010. Central Pacific El Nino and Decadal Climate Change in the North Pacific Ocean. Nature Geoscience 3(11):762. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/DiLorenzo_etal_2010_Central%20Pacific%20El%20Nino%20and%20Decadal%20Climate%20Change%20in%20the%20North%20Pacific%20Ocean.pdf?csf=1&web=1&e=slhojF</a >

Dill, W. A., and A. J. Cordone. 1997. Fish Bulletin 178: History and Status of Introduced Fishes in California, 1871–1996. Sacramento, CA: California Department of Fish and Game, Inland Fisheries Division. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Dill_Cordone_1997_Fish%20Bulletin%20178%20History%20and%20Status%20of%20Introduced%20Fishes%20in%20California,%201871%E2%80%931996.pdf?csf=1&web=1&e=7WfrQU</a >

DuBois, J., Danos, A. 2017. 2016 Sturgeon Fishing Report Card: preliminary data report. California Department of Fish and Wildlife. Stockton, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/DuBois_Harris_2016%20Sturgeon%20Card%20Preliminary%20Data%20Report.pdf</a >

DuBois, J., Danos, A. 2018. 2017 Sturgeon Fishing Report Card: preliminary data report. California Department of Fish and Wildlife. Stockton, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/DuBois_Harris_2017%20Sturgeon%20Card%20Preliminary%20Data%20Report.pdf?csf=1&web=1&e=US8Mrz</a >

DuBois, J., Harris, M. D. 2015. 2014 Sturgeon Fishing Report Card: preliminary data report. California Department of Fish and Wildlife. Stockton, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/DuBois_Harris_2015%20Sturgeon%20Card%20Complete%20Draft%20Version%201.pdf?csf=1&web=1&e=ayHNZE</a >

DuBois, J., Harris, M. D. 2016. 2015 Sturgeon Fishing Report Card: preliminary data report. California Department of Fish and Wildlife. Stockton, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/DuBois_Harris_2015%20Sturgeon%20Card%20Complete%20Draft%20Version%201.pdf?csf=1&web=1&e=ayHNZE</a >

Dudley, P. N. 2018. A Salmonid Individual-Based Model as a Proposed Decision Support Tool for Management of a Large Regulated River. Ecosphere 9(1):e02074. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Dudley_2018_A%20salmonid%20individual%E2%80%90based%20model%20as%20a%20proposed%20decision%20support%20tool%20for%20management%20of%20a%20large.pdf</a >

Earley, J. T., D. J. Colby, and M. R. Brown. 2013. Juvenile Salmonid Monitoring in Sacramento River tributaries, California, from October 2010 through September 2011. U.S. Fish and Wildlife Service, Red Bluff Fish and Wildlife Office, Red Bluff, CA. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1133%20Poytress%20et%20al.%202014.%20Juvenile%20Anadromous%20Fish%20Monitoring%20Compendium%20Report%20(2002-2012).pdf</a >

Emmett, R. L., S. L. Stone, S. A. Hinton, and M. E. Monaco. 1991. Distribution and Abundance of Fishes and Invertebrates in West Coast Estuaries, Volume II: Species Life History Summaries. ELMR Rep. No. 8. NOOAA/NOS strategic Environmental Assessments division, Rockville, MD, 329 p. https://repository.library.noaa.gov/view/noaa/2871</a >

Emmett, R. L., R. D. Brodeur, T. W. Miller, S. S. Pool, G. K. Krutzikowsky, P. J. Bentley, and J. McCrae. 2005. Pacific Sardine (Sardinops Sagax) Abundance, Distribution, and Ecological Relationships in the Pacific Northwest. CalCOFI Rep., Vol. 46. p. 122. https://www.researchgate.net/publication/252533525_Pacific_sardine_Sardinops_sagax_abundance_distribution_and_ecological_relationships_in_the_Pacific_Northwest</a >

Erickson, D. L., J. A. North, J. E. Hightower, J. Weber, and L. Lauck. 2002. Movement and Habitat Use of Green Sturgeon Acipenser medirostris in the Rogue River, Oregon, USA. Journal of Applied Ichthyology 18:565–569. https://onlinelibrary.wiley.com/doi/abs/10.1046/j.1439-0426.2002.00403.x</a >

Farley, T. C. 1966. Striped Bass, Roccus Saxatilis, Spawning in the Sacramento–San Joaquin River Systems during 1963 and 1964. In Fish Bulletin 136: Ecological Studies of the Sacramento–San Joaquin Estuary, Part II—Fishes of the Delta, edited by J. L. Turner and D. W. Kelley, 28–43. Sacramento, CA: California Department of Fish and Game.

Federal Energy Regulatory Commission. 2007. Final Environmental Impact Statement for Hydropower License, Oroville Facilities. FERC Project No. 2100-052, California. https://catalog.gpo.gov/F/?func=direct&doc_number=000601828&format=999</a >

Ferrari, M. C. O., L. Ranåker, K. L. Weinersmith, M. J. Young, A. Sih, and J. L. Conrad. 2014. Effects of Turbidity and an Invasive Waterweed on Predation by Introduced Largemouth Bass. Environmental Biology of Fishes 97(1):79–90. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11A_Aquatic_Spp_Life_Hist/Ferrari_etal_2013_Effects%20of%20Turbidity%20and%20an%20Invasive%20Waterweed%20on%20Predation%20by%20Introduced%20Largemouth%20Bass.pdf</a >

Feyrer, F., B. Herbold, S. A. Matern, and P. B. Moyle. 2003. Dietary Shifts in a Stressed Fish Assemblage: Consequences of a Bivalve Invasion in the San Francisco Estuary. Environmental Biology of Fishes 67:277–288. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/FeyrerEtAl_2003_dietaryshiftsstressedfish.pdf?csf=1&web=1&e=pM8EYI</a >

Feyrer, R., T. R. Sommer, and R. D. Baxter. 2005. Spatial-Temporal Distribution and Habitat 28 Associations of Age-0 Splittail in the Lower San Francisco Watershed. Copeia 2005(1):159–168. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/FeyrerEtAl_2005_SpatialTemporal.pdf</a >

Feyrer, F., T. Sommer, and W. Harrell. 2006. Managing Floodplain Inundation for Native Fish: Production Dynamics of Age-0 Splittail (Pogonichthys macrolepidotus) in California’s Yolo Bypass. Hydrobiologia 573:213–226. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/FeyrerEtAl_2006a_ManagingFloodplain.pdf?csf=1&web=1&e=jy7abe</a >

Feyrer, F., M. L. Nobriga, and T. R. Sommer. 2007. Multi-Decadal Trends for Three Declining Fish Species: Habitat Patterns and Mechanisms in the San Francisco Estuary, California, USA. Canadian Journal of Fisheries and Aquatic Sciences 64:723–734. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/FeyrerEtAl_2007_Multi-decadal.pdf?csf=1&web=1&e=Aegj8a</a >

Feyrer, F., T. Sommer, and S. B. Slater. 2009. Old School vs. New School: Status of Threadfin Shad (Dorosoma petenense) Five Decades after Its Introduction to the Sacramento–San Joaquin Delta. San Francisco Estuary and Watershed Science, 7(1). Available: https://escholarship.org/uc/item/4dt6p4bv</a >.

Feyrer, F., K. Newman, M. Nobriga, and T. Sommer. 2011. Modeling the Effects of Future Outflow on the Abiotic Habitat of an Imperiled Estuarine Fish. Estuaries and Coasts 34:120–128. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/FeyrerEtAl_2011_Modeling_effects.pdf</a >

Feyrer, F., Portz, D., Odum, D., Newman, K.B., Sommer, T., Contreras, D., Baxter, R., Slater, S.B., Sereno, D. and E. Van Nieuwenhuyse. 2013. SmeltCam: Underwater Video Codend for Trawled Nets with an Application to the Distribution of the Imperiled Delta Smelt. PLOS ONE, 8(7)

Finger, A. J., G. Schumer, A. Benjamin, and S. Blankenship. 2017. Evaluation and Interpretation of Genetic Effective Population Size of Delta Smelt from 2011–2014. San Francisco Estuary and Watershed Science 15(2). https://escholarship.org/uc/item/4109064c</a >

Fisch, K. M., J. A. Ivy, R. S. Burton, and B. May. 2013. Evaluating the Performance of Captive Breeding Techniques for Conservation Hatcheries: A Case Study of the Delta Smelt Captive Breeding Program. Journal of Heredity 104(1):92–104. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Fisch_etal_2013_Evaluating%20the%20Performance%20of%20Captive%20Breeding%20Techniques%20for%20Conservation%20Hatcheries.pdf</a >

Fisch, K.M., Mahardja, B., Burton, R.S. and May, B. 2014. Hybridization between delta smelt and two other species within the f Available: amily Osmeridae in the San Francisco Bay-Delta. Conservation Genetics 15(2):489–494. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11A_Aquatic_Spp_Life_Hist/Fisch%20et%20al_2014_Hybridization.pdf</a >

Fish, M. A. 2010. A White Sturgeon Year-Class Index for the San Francisco Estuary and Its Relation to Delta Outflow. IEP Newsletter 23(2):80–84. Spring. https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&ved=2ahUKEwjQ-aPkhrqBAxVLLUQIHdT3BNYQFnoECA4QAQ&url=https%3A%2F%2Fnrm.dfg.ca.gov%2FFileHandler.ashx%3FDocumentId%3D26542&usg=AOvVaw0rXeUH_hNrwudvMOQ1hA_v&opi=89978449</a >

FISHBIO Environmental, LLC. 2007. 2007 Stanislaus River Data Report. Final Data. http://www.tuolumnerivertac.com/Documents/2007-4%20RST.pdf</a >

FISHBIO Environmental, LLC. 2010. FISHBIO Fall-Run Chinook Salmon Update. Posted on the FISHBIO blog on December 15, 2010. Available: http://fishbio.com/field-notes/population-dynamics/fishbio-fall-run-chinook-salmon-update-2</a >. Accessed: October 13, 2015.

Fisher, F. W. 1994. Past and Present Status of Central Valley Chinook Salmon. Conservation Biology 8(3):870–873. http://www.jstor.org/stable/2386533</a >.

Flow Alteration – Management, Analysis, and Synthesis Team. 2020. Synthesis of Data and Studies Relating to Delta Smelt Biology in the San Francisco Estuary, Emphasizing Water Year 2017. IEP Technical Report 95. Interagency Ecological Program, Sacramento, CA.

Friedman, W. R., B. T. Martin, B. K. Wells, P. Warzybok, C. J. Michel, E. M. Danner, and S. T. Lindley. 2019. Modeling composite effects of marine and freshwater processes on migratory species. Ecosphere 10(7):e02743. https://repository.library.noaa.gov/view/noaa/24309</a >

Fry, D. H., Jr. 1961. King Salmon Spawning Stocks of the California Central Valley, 1940–1959. California Fish and Game 47(1):55–71. http://www.krisweb.com/biblio/ccv_cdfg_fry_1960_kingstock.pdf</a >

Gard, M. 2013. Flow-Habitat Relationships for Juvenile Spring-Run and Fall-Run Chinook Salmon and Steelhead/Rainbow Trout Rearing in Clear Creek between Clear Creek and the Sacramento River. U.S. Fish and Wildlife Service, Sacramento, CA.

Garwood, R. S. 2017. Historic and Contemporary Distribution of Longfin Smelt (Spirinchus thaleichthys) along the California Coast. California Fish and Game 103(3):96–117. https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&ved=2ahUKEwid2tKVhbqBAxX9J0QIHV1SCXkQFnoECBcQAQ&url=https%3A%2F%2Fnrm.dfg.ca.gov%2FFileHandler.ashx%3FDocumentID%3D152480&usg=AOvVaw1X8HuYMiNxPw4AFVhOvo4k&opi=89978449</a >

Ger, K. A., S. J. Teh, D. V. Baxa, S. Lesmeister, and C. R. Goldman. 2010. The Effects of Dietary Microcystis aeruginosa and microcystin on the Copepods of the Upper San Francisco Estuary. Freshwater Biology 55:1548–1559. https://www.researchgate.net/publication/275024095_The_effects_of_dietary_Microcystis_aeruginosa_and_microcystin_on_the_copepods_of_the_upper_San_Francisco_Estuary</a >

Giovannetti, S. L., R. J. Bottaro, and M. R. Brown. 2013. Adult Steelhead and Late-Fall Chinook Salmon Monitoring on Clear Creek, California: 2011 Annual Report. U.S. Fish and Wildlife Service, Red Bluff Fish and Wildlife Office, Red Bluff, CA. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626346.pdf</a >

Goals Project. 2000. Baylands Ecosystem Species and Community Profiles: Life Histories and Environmental Requirements of Key Plants, Fish and Wildlife. Prepared by the San Francisco Bay Area Wetlands Ecosystem Goals Project. P.R. Olofson, editor. San Francisco Bay Regional Water Quality Control Board, Oakland, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Goals%20Project_2000_Baylands%20Ecosystem%20Species%20and%20Community%20Profiles.pdf</a >

Goertler, P., K. Jones, J. Cordell, B. Schreier, and T. Sommer. 2018a. Effects of Extreme Hydrologic Regimes on Juvenile Chinook Salmon Prey Resources and Diet Composition in a Large River Floodplain. Transactions of the American Fisheries Society 147(2):287–299. https://afspubs.onlinelibrary.wiley.com/doi/full/10.1002/tafs.10028</a >

Goertler, P. A. L., T. R. Sommer, W. H. Satterthwaite, and B. M. Schreier. 2018b. Seasonal Floodplain-Tidal Slough Complex Supports Size Variation for Juvenile Chinook Salmon (Oncorhynchus tshawytscha). Ecology of Freshwater Fish 27:580–593. https://onlinelibrary.wiley.com/doi/pdf/10.1111/eff.12372</a >

Goertler, P. A., A. W. Shakya, A. M. Seesholtz, B. M. Schreier, S. Z. Matica, and K. S. Holley. 2019. Lamprey (Entosphenus sp. and Lampetra sp.) Estuarine Occupancy Is Regionally Variable and Constrained by Temperature. Journal of Fish Biology 96(2):527–532. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7028102/</a >

Good, T. P., R. S. Waples, and P. Adams (editors). 2005. Updated Status of Federally Listed ESUs of West Coast Salmon and Steelhead. U.S. Department of Commerce, NOAA Tech. Memo. NMFS-NWFSC-66, 598 p. https://www.webapps.nwfsc.noaa.gov/assets/25/203_08302005_132955_brttechmemo66final2.pdf</a >

Goodman, D. H., S. B. Reid, N. A. Som, and W. R. Poytress. 2015. The Punctuated Seaward Migration of Pacific Lamprey (Entosphenus tridentatus): Environmental Cues and Implications for Streamflow Management. Canadian Journal of Fisheries and Aquatic Sciences 72(12):1817–1828. https://www.researchgate.net/publication/283015008_The_punctuated_seaward_migration_of_Pacific_lamprey_Entosphenus_tridentatus_Environmental_cues_and_implications_for_streamflow_management</a >

Gould, A. L., and W. J. Kimmerer. 2010. Development, Growth, and Reproduction of the Cyclopoid Copepod Limnoithona tetraspina in the Upper San Francisco Estuary. Marine Ecology Progress Series 412:163–177. https://www.researchgate.net/publication/250219580_Development_growth_and_reproduction_of_the_cyclopoid_copepod_Limnoithona_tetraspina_in_the_upper_San_Francisco_Estuary</a >

Greenfield, B. K., S. J. Teh, J. R. M. Ross, J. Hunt, G. H. Zhang, J. A. Davis, G. Ichikawa, D. Crane, S. O. Hung, D. F. Deng, F. C. Teh, and P. G. Green. 2008. Contaminant Concentrations and Histopathological Effects in Sacramento Splittail (Pogonichthys macrolepidotus). Environmental Contamination & Toxicology 55(2):270–281. https://pubmed.ncbi.nlm.nih.gov/18185947/</a >

Gregory, R. S., and C. D. Levings. 1998. Turbidity Reduces Predation on Migrating Juvenile Pacific Salmon. Transactions of the American Fisheries Society 127(2):275–285. https://olis.oregonlegislature.gov/liz/2017R1/Downloads/CommitteeMeetingDocument/96038</a >

Grimaldo, L. 2018. Written Testimony of Lenny Grimaldo, Expert Witness for California Department of Water Resources. Exhibit DWR-1222. Part 2 of Hearing in the matter of California Department of Water Resources and United States Bureau of Reclamation Request for a Change in Point of Diversion for California WaterFix Before the California State Water Resources Control Board. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Grimaldo_2018_Written%20Testimony%20of%20Lenny%20Grimaldo,%20Expert%20Witness%20for%20California%20Department%20of%20Water%20Resources.pdf</a >

Grimaldo, L. F., R. E. Miller, C. M. Peregrin, and Z. P. Hymanson. 2004. Spatial and Temporal Distribution of Native and Alien Ichthyoplankton in Three Habitat Types of the Sacramento–San Joaquin Delta. Pages 81–96 in F. Feyrer, L. R. Brown, R. L. Brown, and J. J. Orsi, editors. Early Life History of Fishes in the San Francisco Estuary and Watershed. Bethesda, MD: American Fisheries Society. https://emp.baydeltalive.com/assets/06942155460a79991fdf1b57f641b1b4/application/pdf/Symposium_39_81-96_Spatial1.pdf</a >

Grimaldo, L. F., T. Sommer, N. Van Ark, G. Jones, E. Holland, P. B. Moyle, P. Smith, and B. Herbold. 2009. Factors Affecting Fish Entrainment into Massive Water Diversions in a Freshwater Tidal Estuary: Can Fish Losses Be Managed? North American Journal of Fisheries Management 29(5):1253–1270. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2_rebuttal/dwr_1314.pdf</a >

Grimaldo, L., F. Feyrer, J. Burns, and D. Maniscalco. 2017. Sampling Uncharted Waters: Examining Rearing Habitat of Larval Longfin Smelt (Spirinchus thaleichthys) in the Upper San Francisco Estuary. Estuaries and Coasts 40(6):1771–1784. https://www.researchgate.net/publication/317747953_Sampling_Uncharted_Waters_Examining_Rearing_Habitat_of_Larval_Longfin_Smelt_Spirinchus_thaleichthys_in_the_Upper_San_Francisco_Estuary</a >

Grimaldo, L., J. Burns, R. E. Miller, A. Kalmbach, A. Smith, J. Hassrick, and C. Brennan. 2020. Forage Fish Larvae Distribution and Habitat Use During Contrasting Years of Low and High Freshwater Flow in the San Francisco Estuary. San Francisco Estuary and Watershed Science 18(3). https://escholarship.org/uc/item/0jc956v6</a >

Grossman, G. D. 2016. Predation on Fishes in the Sacramento–San Joaquin Delta: Current Knowledge and Future Directions. San Francisco Estuary and Watershed Science 14(2). Available: https://escholarship.org/uc/item/9rw9b5tj</a >.

Gruber, J. J, Z. J. Jackson, and J.P. Van Eenennaam. 2012. 2011 San Joaquin River Sturgeon Spawning Survey. First Annual Report. Lodi Fish and Wildlife Office, Anadromous Fish Restoration Program, U.S. Fish and Wildlife Service, Stockton, CA. https://www.researchgate.net/publication/306012747_2012_San_Joaquin_River_Sturgeon_Spawning_Survey</a >

Gunckel, S. L., K. K. Jones, and S. E. Jacobs. 2009. Spawning Distribution and Habitat Use of Adult Pacific and Western Brook Lampreys in Smith River, Oregon. In Biology, Management, and Conservation of Lampreys in North America: American Fisheries Society Symposium 72, edited by L. R. Brown, S. D. Chase, M. G. Mesa, R. J. Beamish, and P. B. Moyle, 173–189. Bethesda, MD: American Fisheries Society. https://odfw-static.forestry.oregonstate.edu/freshwater/inventory/pdffiles/Gunckel_173-190.pdf</a >

Haertel, L., and C. Osterberg. 1967. Ecology of Zooplankton, Benthos and Fishes in the Columbia River Estuary. Ecology 48:459–472. https://www.jstor.org/stable/1936889</a >

Hallock, R. J. 1989. Upper Sacramento River Steelhead, Oncorhynchus mykiss, 1952–1988. Report to the U.S. Fish and Wildlife Service, Red Bluff Fish and Wildlife Office, Red Bluff, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Hallock_1989_Upper%20Sacramento%20River%20Steelhead,%20Oncorhynchus%20mykiss,%201952%E2%80%931988.pdf</a >

Hallock, R. J., and W. F. Van Woert. 1959. A Survey of Anadromous Fish Losses in Irrigation Diversions from the Sacramento and San Joaquin Rivers. California Fish and Game 45(4):227–296. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Hallock_Woert_1959_A%20Survey%20of%20Anadromous%20Fish%20Losses%20in%20Irrigation%20Diversions%20from%20the%20Sacramento%20and%20San%20Joaquin%20Rivers.%20California.pdf</a >

Hamilton, S. A., and D. D. Murphy. 2018. Analysis of limiting factors across the life cycle of delta smelt (Hypomesus transpacificus). Environmental Management 62:365–382. Available: https://doi.org/10.1007/s00267-018-1014-9</a >.

Hamilton, S. A., and D. D. Murphy. 2020. Use of Affinity Analysis to Guide Habitat Restoration and Enhancement for the Imperiled Delta Smelt. Endangered Species Research 43:103–120. https://www.int-res.com/articles/esr2020/43/n043p103.pdf</a >

Hamilton, S., S. Bartell, J. Pierson, and D. Murphy. 2020. Factors controlling calanoid copepod biomass and distribution in the Upper San Francisco Estuary and implications for managing the imperiled delta smelt (Hypomesus transpacificus). Environmental Management 65:587–601. Available: https://doi.org/10.1007/s00267-020-01267-8</a >.

Hammock, B. G., R. Hartman, S. B. Slater, A. Hennessy, and S. J. Teh. 2019a. Tidal Wetlands Associated with Foraging Success of Delta Smelt. Estuaries and Coasts 42(3):857–867. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Hammock_etal_2019a_Hydrodynamic%20Modeling%20Coupled%20with%20Long-Term%20Field%20Data%20Provide%20Evidence%20for%20Suppression%20of%20Phytoplankton%20by%20Invasive%20Clams%20and%20Freshwater%20Exports%20in%20the%20San%20Francisco%20Estuary.pdf</a >

Hammock, B. G., S. P. Moose, S. S. Solis, E. Goharian, and S. J. Teh. 2019b. Hydrodynamic Modeling Coupled with Long-Term Field Data Provide Evidence for Suppression of Phytoplankton by Invasive Clams and Freshwater Exports in the San Francisco Estuary. Environmental Management 63:703–717. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Hammock_etal_2019b_Tidal%20Wetlands%20Associated%20with%20Foraging%20Success%20of%20Delta%20Smelt.pdf</a >

Hanni, J., B. Poytress, and H. N. Blalock-Herod. 2006. Spatial and Temporal Distribution Patterns of Pacific and River Lamprey in the Sacramento and San Joaquin Rivers and Delta. Poster. U.S. Fish and Wildlife Service. https://www.usbr.gov/mp/nepa/includes/documentShow.php?Doc_ID=22410</a >

Hannon, J., and B. Deason. 2008. American River Steelhead Spawning 2001–2007. Bureau of Reclamation. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626372.pdf</a >

Hanson, M. B., R. W. Baird, J. K. B. Ford, J. A. Hempelmann, D. M. Van Doornik, J. R. Candy, C. K. Emmons, G. S. Schorr, B. Gisborne, K. L. Ayres, S. K. Wasser, K. C. Balcomb, K. Balcomb-Bartok, J. G. Sneva, and M. J. Ford. 2010. Species and Stock Identification of Prey Consumed by Endangered Southern Resident Killer Whales in Their Summer Range. Endangered Species Research 11:69–82. Available: https://doi.org/10.3354/esr00263</a >.

Hart, J. L. 1973. Pacific Fishes of Canada, Bulletin 180. Ottawa, Canada: Fisheries Resource Board of Canada.

Hassler, T. J. 1988. Species Profiles: Life Histories and Environmental Requirements of Coastal Fishes and Invertebrates (Pacific Southwest)—Striped Bass. U.S. Fish and Wildlife Service Biological Report 82(11.82). U.S. Army Corps of Engineers, TR EL-82-4. https://www.govinfo.gov/content/pkg/GOVPUB-I49-PURL-LPS73959/pdf/GOVPUB-I49-PURL-LPS73959.pdf</a >

Hassrick, J. L., M. J. Henderson, D. D. Huff, W. J. Sydeman, M. C. Sabal, J. A. Harding, A. J. Ammann, E. D. Crandall, E. P. Bjorkstedt, J. C. Garza, and S. A. Hayes. 2016. Early ocean distribution of juvenile Chinook salmon in an upwelling ecosystem. Fisheries Oceanography 25(2):133–146. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Hassrick_et_al_2016_EarlyoceandistributionofjuvenileChinooksalmoninanupwellingsystem_Fish_Oceanog.pdf</a >

Haugen, C. W., J. D. Messersmith, and R. H. Wickwire. 1969. Progress Report on Anchovy Tagging off California and Baja California, March 1966 through May 1969. In Fish Bulletin 147: The Northern Anchovy (Engraulis mordax) and Its Fishery (1965–1968), edited by J. D. Messersmith, 75–89. Sacramento, CA: California Department of Fish and Game. https://escholarship.org/content/qt1536j1nz/qt1536j1nz.pdf?t=lnqwjp</a >

Healey, M. C. 1991. Life History of Chinook Salmon (Oncorhynchus tshawytscha). In Pacific Salmon Life Histories, edited by C. Groot and L. Margolis. Vancouver, Canada: University of British Columbia Press. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626401-1.pdf</a >

Hennessy, A. 2010. Zooplankton Monitoring, 2009. Interagency Ecological Program Newsletter 23(2):15–22.

Herbold, B., C. Armor, R. Baxter, M. Chotkowski, P. Coulston, M. Nobriga, and T. Sommer. 2005. Historical Patterns in Salvage Data. CALFED Science Program. Available: http://www.science.calwater.ca.gov/pdf/workshops/POD/CDFG_POD_Historical_Patterns_in_Salvage_Data.pdf</a >.

Hestir, E. L., D. H. Schoellhamer, J. Greenberg, T. Morgan-King, and S. L. Ustin. 2016. The Effect of Submerged Aquatic Vegetation Expansion on a Declining Turbidity Trend in the Sacramento–San Joaquin River Delta. Estuaries and Coasts 39(4):1100–1112. https://link.springer.com/article/10.1007/s12237-015-0055-z</a >

Heublein, J. C. 2006. Migration of Green Sturgeon, Acipenser medirostris in the Sacramento River. Master’s thesis. California State University, San Francisco, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Heublein_2006_Migration%20of%20Green%20Sturgeon,%20Acipenser%20medirostris%20in%20the%20Sacramento%20River..pdf</a >

Heublein, J. C., J. T. Kelly, C. E. Crocker, A. P. Klimley, and S. T. Lindley. 2009. Migration of Green Sturgeon, Acipenser medirostris in the Sacramento River. Environmental Biology of Fishes 84(3): 245–258. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626160.pdf</a >

Heublein, J., R. Bellmer, R. D. Chase, P. Doukakis, M. Gingras, D. Hampton, J. A. Israel, Z. J. Jackson, R. C. Johnson, O. P. Langness, S. Luis, E. Mora, M. L. Moser, L. Rohrbach, A. M. Seesholtz, T. Sommer, and J. Stuart. 2017a. Life History and Current Monitoring Inventory of San Francisco Estuary Sturgeon. September. NOAA-TM-NMFS-SWFSC-589. National Marine Fisheries Service, Southwest Fisheries Science Center, Santa Cruz, CA. https://swfsc-publications.fisheries.noaa.gov/publications/TM/SWFSC/NOAA-TM-NMFS-SWFSC-588.pdf</a >

Heublein, J., R. Bellmer, R. D. Chase, P. Doukakis, M. Gingras, D. Hampton, J. A. Israel, Z. J. Jackson, R. C. Johnson, O. P. Langness, S. Luis, E. Mora, M. L. Moser, L. Rohrbach, A. M. Seesholtz, and T. Sommer. 2017b. Improved Fisheries Management through Life Stage Monitoring: The Case for the Southern Distinct Population Segment of North American Green Sturgeon and the Sacramento–San Joaquin River White Sturgeon. September. NOAA-TM-NMFS-SWFSC-588. National Marine Fisheries Service, Southwest Fisheries Science Center, Santa Cruz, CA. https://swfsc-publications.fisheries.noaa.gov/publications/TM/SWFSC/NOAA-TM-NMFS-SWFSC-588.pdf</a >

Hieb, K., and R. Baxter. 1993. Delta Outflow/San Francisco Bay. In 1991 Annual Report, Interagency Ecological Studies Program for the Sacramento–San Joaquin Estuary, edited by P.L. Herrgesell. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/sldmwa/kimmerer2004sfewsopenwaterprocessesofsfestuary.pdf</a >

Hilborn, R., S. P. Cox, F. M. D. Gulland, D. G. Hankin, N. T. Hobbs, D. E. Schindler, and A. W. Trites. 2012. The Effects of Salmon Fisheries on Southern Resident Killer Whales: Final Report of the Independent Science Panel. November 30. Prepared for National Marine Fisheries Service and Fisheries and Oceans Canada. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626726.pdf</a >

Hildebrand, L. R., A. Drauch Schreier, K. Lepla, S. O. McAdam, J. McLellan, M. J. Parsley, V. L. Paragamian, and S. P. Young. 2016. Status of White Sturgeon (Acipenser transmontanus Richardson, 1863) throughout the Species Range, Threats to Survival, and Prognosis for the Future. Journal of Applied Ichthyology 32(S1):261–312.

Hobbs, J. A., W. A. Bennett, and J. E. Burton. 2006. Assessing Nursery Habitat Quality for Native Smelts (Osmeridae) in the Low-Salinity Zone of the San Francisco Estuary. Journal of Fish Biology 69(3):907–922. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Hobbs_etal_2006_Assessing%20Nursery%20Habitat%20Quality%20for%20Native%20Smelts%20(Osmeridae)%20in%20the%20Low-Salinity%20Zone%20of%20the%20San%20Francisco%20Estuary.pdf</a >

Hobbs, J. A., L. S. Lewis, N. Ikemiyagi, T. Sommer, and R. D. Baxter. 2010. The Use of Otolith Strontium Isotopes (87Sr/86Sr) to Identify Nursery Habitat for a Threatened Estuarine Fish. Environmental Biology of Fishes 89(3):557–569. https://escholarship.org/uc/item/7500107h</a >

Hobbs, J. A., C. Parker, J. Cook, P. Crain, and M. Bisson, and C. Parker. 2015. The Distribution and Abundance of Larval and Adult 1 Longfin Smelt in San Francisco Bay Tributaries Year 1: Pilot Study. Prepared for California Department of Water Resources and the IEP Longfin Smelt Project Work Team. Davis, CA: Department of Wildlife, Fish and Conservation Biology. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Hobbs_etal_2015_The%20Distribution%20and%20Abundance%20of%20Larval%20and%20Adult%201%20Longfin%20Smelt%20in%20San%20Francisco%20Bay%20Tributaries%20Year%201%20Pilot%20Study.pdf</a >

Hobbs, J. A., L. S. Lewis, M. Willmes, C. Denney, and E. Bush. 2019. Complex Life Histories Discovered in a Critically Endangered Fish. Scientific Reports 9(1):1–12. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Hobbs_etal_2019_Complex%20life%20histories.pdf</a >

ICF International. 2016a. Biological Assessment for the California WaterFix. July. (ICF 00237.15.) Sacramento, CA. Prepared for the United States Department of the Interior, Bureau of Reclamation, Sacramento, CA. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626661.pdf</a >

ICF International. 2016b. State Incidental Take Permit Application for the Construction and Operation of Dual Conveyance Facilities of the State Water Project. Draft. October. (ICF 00443.12.) Sacramento, CA. Prepared for the California Department of Water Resources, Sacramento, CA. https://water.ca.gov/-/media/DWR-Website/Web-Pages/Programs/State-Water-Project/Files/ITP-for-Long-Term-SWP-Operations.pdf</a >

ICF International. 2017. Public Water Agency 2017 Fall X2 Adaptive Management Plan Proposal. Submitted to United States Bureau of Reclamation and Department of Water Resources. Draft. August 30. (ICF 00508.17.) Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11A_Aquatic_Spp_Life_Hist/ICF_2017_Public%20Water%20Agency%202017%20Fall%20X2%20AMP_Draft.pdf</a >

Independent Science Panel and ESSA Technologies. 2012. The Effects of Salmon Fisheries on Southern Resident Killer Whales. Final Report of the Independent Science Panel. Prepared for National Marine Fisheries Service and Fisheries and Oceans Canada. November 30. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626726.pdf</a >

Interagency Ecological Program Management Analysis and Synthesis Team. 2015. An Updated Conceptual Model of Delta Smelt Biology: Our Evolving Understanding of an Estuarine Fish. January. Technical Report 90. Interagency Ecological Program for the San Francisco Bay/Delta Estuary. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1089%20IEP_MAST_Team_2015_Delta_Smelt_MAST_Synthesis_Report_January%202015.pdf</a >.

Israel, J. A., and A. P. Klimley. 2008. Life History Conceptual Model for North American Green Sturgeon (Acipenser medirostris). December. University of California, Davis. Prepared for California Department of Fish and Game, Delta Regional Ecosystem Restoration and Implementation Program, Sacramento, CA. https://swfsc-publications.fisheries.noaa.gov/publications/TM/SWFSC/NOAA-TM-NMFS-SWFSC-589.pdf</a >

Israel J. A., and B. May. 2010. Characterization and evaluation of polymorphic microsatellite markers in the anadromous fish Spirinchus thaleichthys. Conservation Genetic Resources 2:227–230. https://link.springer.com/article/10.1007/s12686-010-9244-z</a >

Israel, J. A.; Cordes, J. F.; Blumberg, M. A.; May, B. 2004. Geographic patterns of genetic differentiation among collections of green sturgeon. North American Journal of Fisheries Management 24:922–931. https://gvl.ucdavis.edu/sites/g/files/dgvnsk6021/files/inline-files/israel_2004.pdf</a >

Israel, J., A. Drauch, and M. Gingras. 2008. Life History Conceptual Model for White Sturgeon (Acipenser transmontanus). University of California, Davis, and California Department of Fish and Game, Stockton, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Israel_etal_2008_Life%20History%20Conceptual%20Model%20for%20White%20Sturgeon%20(Acipenser%20transmontanus).pdf</a >

Jackson, Z. J., and J. P. Van Eenennaam. 2013. 2012 San Joaquin River Sturgeon Spawning Survey. U.S. Fish and Wildlife Service, Anadromous Fish Restoration Program, Stockton Fish and Wildlife Office, Stockton, CA. https://www.researchgate.net/publication/306012841_2013_San_Joaquin_River_Sturgeon_Spawning_Survey</a >

Jassby, A. D., W. J. Kimmerer, S. G. Monismith, C. Armor, J. E. Cloern, T. M. Powell, J. R. Schubel, and T. J. Vendlinski. 1995. Isohaline Position as a Habitat Indicator for Estuarine Populations. Ecological Applications 5(1):272–289. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/dwr/dwr_exh10.pdf</a >

Jeffres, C. A., J. J. Opperman, and P. B. Moyle. 2008. Ephemeral Floodplain Habitats Provide Best Growth Conditions for Juvenile Chinook Salmon in a California River. Environmental Biology of Fishes 83:449–458. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626574.pdf</a >

Jeffries, K. M., R. E. Connon, B. E. Davis, L. M. Komoroske, M. T. Britton, T. Sommer, A. E. Todgham, and N. A. Fangue. 2016. Effects of High Temperatures on Threatened Estuarine Fishes during Periods of Extreme Drought. Journal of Experimental Biology 219(11):1705–1716. https://pubmed.ncbi.nlm.nih.gov/27252456/</a >

Johnston, M. E., A. E. Steel, M. Espe, T. Sommer, A. P. Klimley, P. Sandstrom, and D. Smith. 2018. Survival of Juvenile Chinook Salmon in the Yolo Bypass and the Lower Sacramento River, California. San Francisco Estuary and Watershed Science 16(2). Available: https://escholarship.org/uc/item/8bq7t7rr</a >.

Katz, J. V. E., Jeffres C., Conrad J. L., Sommer T. R., Martinez J., Brumbaugh S., Corline, N., and P. B. Moyle. 2017. Floodplain Farm Fields Provide Novel Rearing Habitat for Chinook Salmon. PLOS ONE 12(6):e0177409. Available: https://doi.org/10.1371/journal.pone.0177409</a >.

Kelly, J. T., A. P. Klimley, and C. E. Crocker. 2007. Movements of Green Sturgeon, Acipenser medirostris, in the San Francisco Bay Estuary, California. Environmental Biology of Fishes 79:281–295. https://www.researchgate.net/publication/226959462_Movements_of_green_sturgeon_Acipenser_medirostris_in_the_San_Francisco_Bay_estuary_California</a >

Kennedy, T., and T. Cannon. 2005. Stanislaus River Salmonid Density and Distribution Survey Report (2002–2004). Final Draft. Prepared for the Bureau of Reclamation by the Fishery Foundation of California. October.

Kimmerer, W. J. 2002. Effects of Freshwater Flow on Abundance of Estuarine Organisms: Physical Effects or Trophic Linkages? Marine Ecology Progress Series 243:39–55. https://www.int-res.com/articles/meps2002/243/m243p039.pdf</a >

Kimmerer, W. J. 2004. Open Water Processes of the San Francisco Estuary: From Physical Forcing to Biological Processes. San Francisco Estuary and Watershed Science 2(1). Available: https://escholarship.org/uc/item/9bp499mv</a >.

Kimmerer, W. J. 2006. Response of Anchovies Dampens Effects of the Invasive Bivalve Corbula amurensis on the San Francisco Estuary foodweb. Marine Ecology Progress Series 324:207–218. doi:10.3354/meps324207. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/dwr_1163.pdf</a >

Kimmerer, W. J. 2008. Losses of Sacramento River Chinook Salmon and Delta Smelt to Entrainment in Water Diversions in the Sacramento–San Joaquin Delta. San Francisco Estuary and Watershed Science 6(2). Available: https://escholarship.org/uc/item/7v92h6fs</a >.

Kimmerer, W. J. 2011. Modeling Delta Smelt Losses at the South Delta Export Facilities. San Francisco Estuary and Watershed Science 9(1). Available: https://escholarship.org/uc/item/0rd2n5vb</a >.

Kimmerer, W. J., and M. L. Nobriga. 2008. Investigating Particle Transport and Fate in the Sacramento–San Joaquin Delta Using a Particle Tracking Model. San Francisco Estuary and Watershed Science 6(1). Available: http://escholarship.org/uc/item/547917gn</a >.

Kimmerer, W. J., and K. A. Rose. 2018. Individual‐Based Modeling of Delta Smelt Population Dynamics in the Upper San Francisco Estuary III. Effects of Entrainment Mortality and Changes in Prey. Transactions of the American Fisheries Society 147(1):223–243. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Kimmerer_Rose_2018_Individual%E2%80%90Based%20Modeling%20of%20Delta%20Smelt%20Population%20Dynamics%20in%20the%20Upper%20San%20Francisco%20Estuary%20III.pdf</a >

Kimmerer, W. J., J. H. Cowan, L. W. Miller, and K. A. Rose. 2000. Analysis of an Estuarine Striped Bass (Morone saxatilis) Population: Influence of Density-Dependent Mortality between Metamorphosis and Recruitment. Canadian Journal of Fisheries and Aquatic Sciences 57(2):478–486. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/kimmerer_etal_2000_Analysis%20of%20an%20Estuarine%20Striped%20Bass%20(Morone%20saxatilis)%20Population%20Influence%20of%20Density-Dependent%20Mortality%20between%20Metamorphosis%20and%20Recruitment.pdf</a >

Kimmerer, W. J., J. H. Cowan, Jr., L. W. Miller, and K. A. Rose. 2001. Analysis of an Estuarine Striped Bass Population: Effects of Environmental Conditions during Early Life. Estuaries 24(4):557–575.

Kimmerer, W. J., M. L. MacWilliams, and E. S. Gross. 2013. Variation of Fish Habitat and Extent of the Low-Salinity Zone with Freshwater Flow in the San Francisco Estuary. San Francisco Estuary and Watershed Science 11(4).

Kimmerer, W. J., E. S. Gross, A. M. Slaughter, and J. R. Durand. 2019. Spatial Subsidies and Mortality of an Estuarine Copepod Revealed Using a Box Model. Estuaries and Coasts 42(1):218–236.

Klimley, A. P., T. V. Agosta, A. J. Ammann, R. D. Battleson, M. D. Pagel, and M. J. Thomas. 2017. Real-Time Nodes Permit Adaptive Management of Endangered Species of Fishes. Animal Biotelemetry 5(1):22. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Klimley_etal_2017_Real-Time%20Nodes%20Permit%20Adaptive%20Management%20of%20Endangered%20Species%20of%20Fishes.pdf</a >

Knowles, N. and D. R. Cayan. 2002. Potential Effects of Global Warming on the Sacramento/San Joaquin Watershed and the San Francisco Estuary. Geophysical Research Letters 29(18)38-1–39-4. doi: http://dx.doi.org/10.1029/2001GL014339</a >.

Kogut, N. 2008. Overbite Clam, Corbula amurensis, Defecated Alive by White Sturgeon, Acipenser transmontanus. California Fish and Game 94:143–149. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Kogut_2008_Overbite%20Clam,%20Corbula%20amurensis,%20Defecated%20Alive%20by%20White%20Sturgeon,%20Acipenser%20transmontanus.pdf</a >

Kohlhorst, D. W. 1976. Sturgeon Spawning in the Sacramento River, as Determined by Distribution of Larvae. California Fish and Game Bulletin 62:32–40.

Kohlhorst, D. W., L. W. Botsford, J. S. Brennan, and G. M. Cailliet. 1991. Aspects of the Structure and Dynamics of an Exploited Central California Population of White Sturgeon (Acipenser transmontanus). Pages 277–293. In Acipenser: actes du Premier Colloque International sur l’Esturgeon [Acipenser: proceedings of the First International Colloquium on Sturgeon], edited by P. Williot, Bordeaux, France: Centre d’Etudes du Machinisme Agricole, du Rural, des Eaux et Foreˆts.

Komoroske, L. M., R. E. Connon, J. Lindberg, B. S. Cheng, G. Castillo, M. Hasenbein, and N. A. Fangue. 2014. Ontogeny Influences Sensitivity to Climate Change Stressors in an Endangered Fish. Conservation Physiology 2(1):cou008. http://dx.doi.org/10.1111/eva.12385</a >

Komoroske, M., K. M. Jeffries, R. E. Connon, J. Dexter, M. Hasenbein, C. Verhille and N. A. Fangue. 2016. Sublethal Salinity Stress Contributes to Habitat Limitation in an Endangered Estuarine Fish. Evolutionary Applications. doi: http://dx.doi.org/10.1111/eva.12385</a >.

Korman, J., Gross, E.S. and Grimaldo, L.F. 2021. Statistical Evaluation of Behavior and Population Dynamics Models Predicting Movement and Proportional Entrainment Loss of Adult Delta Smelt in the Sacramento–San Joaquin River Delta. San Francisco Estuary and Watershed Science, 19(1). https://escholarship.org/uc/item/8p60c0cs</a >

Kurobe, T., M. O. Park, A. Javidmehr, F.-C. Teh, S. C. Acuña, C. J. Corbin, A. J. Conley, W. A. Bennett, and S. J. Teh. 2016. Assessing Oocyte Development and Maturation in the Threatened Delta Smelt, Hypomesus transpacificus. Environmental Biology of Fishes 99(4):423–432. https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=200748&inline</a >

Kynard, B., E. Parker, and T. Parker. 2005. Behavior of Early Life Intervals of Klamath River Green Sturgeon, Acipenser medirostris, with a Note on Body Color. Environmental Biology of Fishes 72:85–97. https://www.researchgate.net/publication/248774425_Behavior_of_early_life_intervals_of_Klamath_River_green_sturgeon_Acipenser_medirostris_with_a_note_on_body_color</a >

Lampman, R. T. 2011. Passage, Migration, Behavior, and Autoecology of Adult Pacific Lamprey at Winchester Dam and within the North Umpqua River Basin, Oregon. Master’s thesis. Oregon State University, Department of Fisheries and Wildlife, Corvallis. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Lampman_2011_Passage,%20Migration,%20Behavior,%20and%20Autoecology%20of%20Adult%20Pacific%20Lamprey%20at%20Winchester%20Dam%20and%20within%20the%20North%20Umpqua%20River%20Basin,%20Oregon.%20Master%E2%80%99s%20thesis.pdf</a >

Larson, Z. S., and M. R. Belchik. 1998. A Preliminary Status Review of Eulachon and Pacific Lamprey in the Klamath River Basin. April. Yurok Tribal Fisheries Program, Klamath, CA. https://www.krisweb.com/aqualife/klam_yurok_eulachon_2000.pdf</a >

Lasker, R. 1975. Field Criteria for Survival of Anchovy Larvae: The Relation between Inshore Chlorophyll Maximum Layers and Successful First Feeding. Fishery Bulletin 73(3):453–462. https://spo.nmfs.noaa.gov/sites/default/files/pdf-content/1975/733/lasker.pdf</a >

Latour, R. J. 2016. Explaining Patterns of Pelagic Fish Abundance in the Sacramento–San Joaquin Delta. Estuaries and Coasts 39(1):233–247. doi: http://dx.doi.org/10.1007/s12237-015-9968-9</a >. Available: https://www.researchgate.net/publication/276103376_Explaining_Patterns_of_Pelagic_Fish_Abundance_in_the_Sacramento-San_Joaquin_Delta</a >

Lee, D. P., and J. Chilton. 2007. Hatchery and Genetic Management Plan for Nimbus Fish Hatchery Winter-Run Steelhead Program. Draft Report. Prepared by CDFG under Contract 03CS200006 Modification 0004 with Bureau of Reclamation, Folsom, CA, and Nimbus Fish Hatchery, Rancho Cordova, CA. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626514.pdf</a >

Lee, D. S., C. R. Gilbert, C. H. Hocutt, R. E. Jenkins, D. E. McAllister, and J. R. Stauffer, Jr. 1980. Atlas of North American Freshwater Fishes. North Carolina Biological Survey No. 1980–12. North Carolina State Museum of Natural History, Raleigh, NC. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Lee_etal_1980_Atlas%20of%20North%20American%20Freshwater%20Fishes.pdf</a >

Leggett, W. C. 1973. The Migrations of the Shad. Scientific American 228(3):92–100. https://scholarworks.wm.edu/cgi/viewcontent.cgi?article=3098&context=etd</a >

Leggett, W. C. and R. R. Whitney. 1972. Water Temperature and the Migration of American Shad. U.S. Fish and Wildlife Services Fishery Bulletin 70(3):659–670. https://spo.nmfs.noaa.gov/sites/default/files/pdf-content/1972/703/leggett.pdf</a >

Lehman, B. M., M. P. Gary, N. Demetras, and C. J. Michel. 2019. Where Predators and Prey Meet: Anthropogenic Contact Points Between Fishes in a Freshwater Estuary. San Francisco Estuary and Watershed Science 17(4). Available: https://escholarship.org/uc/item/2dg499z4</a >. Accessed: November 3, 2020.

Lehman, P., T. Kurobe, and S. Teh. 2020. Impact of Extreme Wet and Dry Years on the Persistence of Microcystis Harmful Algal Blooms in San Francisco Estuary. Quaternary International. doi: https://doi.org/10.1016/j.quaint.2019.12.003</a >.

Leidy, R. A. 1984. Distribution and ecology of stream fishes in the San Francisco Bay drainage. Hilgardia 52(8): 1-175. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Leidy_1984_Distribution%20and%20ecology%20of%20stream%20fishes%20in%20the%20San%20Francisco%20Bay%20drainage.pdf</a >

Leidy, R. A. 2007. Ecology, Assemblage Structure, Distribution, and Status of Fishes in Stream Tributary to the San Francisco Estuary, California. SFEI Contribution #530. San Francisco Estuary Institute, Oakland, CA. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/leidy_sfei_2007.pdf</a >

Leidy, R. A., G. S. Becker, and B. N. Harvey. 2005. Historical Distribution and Current Status of Steelhead/Rainbow Trout (Oncorhynchus mykiss) in Streams of the San Francisco Estuary, California. Center for Ecosystem Management and Restoration, Oakland, CA. http://www.cemar.org/pdf/wholedoc2.pdf</a >

Leising, A. W., I. D. Schroeder, S. J. Bograd, J. Abell, R. Durazo, G. Gaxiola-Castro, E. P. Bjorkstedt, J. Field, K. Sakuma, R. R. Robertson, R. Goericke, W. T. Peterson, R. Brodeur, C. Barcelo, T. D. Auth, E. A. Daly, R. M. Suryan, A. J. Gladics, J. M. Porquez, S. McClatchie, E. D. Weber, W. Watson, J. A. Santora, W. J. Sydeman, S. R. Melin, F. P. Chavez, R. T. Golightly, S. R. Schneider, J. Fisher, C. Morgan, R. Bradley, and P. Warybok. 2015. State of the California Current 2014–15: Impacts of the Warm-Water “Blob.” California Cooperative Oceanic Fisheries Investigations Reports 56:31–68. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Leising_etal_2015.%20State%20of%20the%20California%20Current%202014%E2%80%9315%20Impacts%20of%20the%20Warm-Water%20%E2%80%9CBlob.%E2%80%9D.pdf</a >

Lewis, L. S., M. Willmes, A. Barros, P. K. Crain, and J. A. Hobbs. 2020. Newly Discovered Spawning and Recruitment of Threatened Longfin Smelt in Restored and Under‐Explored Tidal Wetlands. Ecology 101(1), e02868:1–4. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9285352/</a >

Lindberg, J. C., G. Tigan, L. Ellison, T. Rettinghouse, M. M. Nagel, and K. M. Fisch. 2013. Aquaculture Methods for a Genetically Managed Population of endangered Delta Smelt. North American Journal of Aquaculture 75(2):186–196. doi: http://dx.doi.org/10.1080/15222055.2012.751942</a >.

Lindberg, J. C., Y.-J. J. Tsai, B. D. Kammerer, B. Baskerville-Bridges, and T.-C. Hung. 2020. Spawning Microhabitat Selection in Wild-Caught Delta Smelt Hypomesus transpacificus under Laboratory Conditions. Estuaries and Coasts 43:174–181. https://link.springer.com/article/10.1007/s12237-021-01030-0</a >

Lindley, S. T., R. Schick, B. P. May, J. J. Anderson, S. Greene, C. Hanson, A. Low, D. McEwan, R. B. MacFarlane, C. Swanson, and J. G. Williams. 2004. Population Structure of Threatened and Endangered Chinook Salmon ESU in California’s Central Valley Basin. Public Review Draft. NOAA Technical Memorandum NMFS, Southwest Science Center, Santa Cruz, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Lindley_etal_2004_Population%20Structure%20of%20Threatened%20and%20Endangered%20Chinook%20Salmon%20ESU%20in%20California%E2%80%99s%20Central%20Valley%20Basin.pdf</a >

Lindley, S. T., R. Schick, E. Mora, P. B. Adams, J. J. Anderson, S. Greene, C. Hanson, B. P. May, D. R. McEwan, R. B. MacFarlane, C. Swanson, and J. G. Williams. 2007. Framework for Assessing Viability of Threatened and Endangered Chinook Salmon and Steelhead in the Sacramento–San Joaquin Basin. San Francisco Estuary and Watershed Science 5(1):26. https://swfsc-publications.fisheries.noaa.gov/publications/CR/2007/2007Lin.pdf</a >

Lindley, S. T., M. L. Moser, D. L. Erickson, M. Belchik, D. W. Welch, E. L. Rechisky, J. T. Kelly, J. Heublein, and A. P. Klimley. 2008. Marine Migration of North American Green Sturgeon. Transactions of the American Fisheries Society 137(1):182–194. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626706.pdf</a >

Lindley, S. T., C. B. Grimes, M. S. Mohr, W. Peterson, J. Stein, J. T. Anderson, C. A. Busack, L. W. Botsford, T. K. Collier, D. L. Bottom, J. C. Garza, A. M. Grover, D. G. Hankin, R. G. Kope, P.W. Lawson, A. Low, J. Ferguson, R. B. MacFarlane, M. Palmer-Zwahlen, F. B. Schwing, J. Smith, C. Tracy, R. Webb, and B. K. Wells. 2009. What Caused the Sacramento River Fall Chinook Salmon Stock Collapse? NOAA, Tech. Memo., NMFS-SWFSC-447. Southwest Fisheries Science Center. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/nmfs/spprt_docs/nmfs_exh4_lindley_etal_2009.pdf</a >

Loboschefsky, E., G. Benigno, T. Sommer, K. Rose, T. Ginn, A. Massoudieh, and F. Loge. 2012. Individual-Level and Population-Level Historical Prey Demand of San Francisco Estuary Striped Bass Using a Bioenergetics Model. San Francisco Estuary and Watershed Science 10(1). Available: https://escholarship.org/uc/item/1c788451</a >.

Lott, J. 1998. Feeding Habits of Juvenile and Adult Delta Smelt from the Sacramento–San Joaquin River Estuary. Interagency Ecological Program for the Sacramento–San Joaquin Estuary Newsletter 11(1):14–19. Available: http://iep.water.ca.gov/report/newsletter/</a >.

Lower American River Task Force. 2002. River Corridor Management Plan (RCMP) for the Lower American River. 116 pages + 4 Appendices.

Mac Nally, R., J. R. Thomson, W. J. Kimmerer, F. Feyrer, K. B. Newman, A. Sih, W. A. Bennett, L. Brown, E. Fleishman, S. D. Culberson, and G. Castillo. 2010. Analysis of Pelagic Species Decline in the Upper San Francisco Estuary Using Multivariate Autoregressive Modeling (MAR). Ecological Applications 20(5):1417–1430. https://www.jstor.org/stable/25680387</a >

MacFarlane, R. B., and E. C. Norton. 2002. Physiological Ecology of Juvenile Chinook Salmon (Oncorhynchus tshawytscha) at the Southern End of Their Distribution, the San Francisco Estuary and Gulf of the Farallones, California. Fishery Bulletin 100(2):244–257. https://spo.nmfs.noaa.gov/sites/default/files/pdf-content/2002/1002/macfar.pdf</a >

MacKenzie, C., L. S. Weiss-Glanz, and J. R. Moring. 1985. Species Profiles: Life Histories and Environmental Requirements of Coast Fishes and Invertebrates (Mid-Atlantic) – American Shad. U.S. Fish and Wildlife Service Biological Report 82(11.37). U.S. Army Corps of Engineers, TR EL-82-4. https://njscuba.net/wp-content/uploads/biology/pdf/usfws_american_shad_0156.pdf</a >

MacWilliams, M., A. J. Bever, and E. Foresman. 2016. 3-D Simulations of the San Francisco Estuary with Subgrid Bathymetry to Explore Long-Term Trends in Salinity Distribution and Fish Abundance. San Francisco Estuary and Watershed Science 14(2). Available: https://escholarship.org/uc/item/5qj0k0m6</a >.

Mahardja B., M. J. Young, B. Schreier, and T. Sommer. 2017. Understanding Imperfect Detection in a San Francisco Estuary Long-Term Larval and Juvenile Fish Monitoring Programme. Fisheries Management and Ecology 24(6):488–503. https://onlinelibrary.wiley.com/doi/full/10.1111/fme.12257</a >

Manly, B. F., J. D. Fullerton, A. N. Hendrix, K. P. Burnham. 2015. Comments on Feyrer et al. Modeling the Effects of Future Outflow on the Abiotic Habitat of an Imperiled Estuarine Fish. Estuaries and Coasts 38(5):1815–1820. https://www.researchgate.net/publication/270516736_Comments_on_Feyrer_et_al_Modeling_the_Effects_of_Future_Outflow_on_the_Abiotic_Habitat_of_an_Imperiled_Estuarine_Fish</a >

Marston, D., C. Mesick, A. Hubbard, D. Stanton, S. Fortmann-Roe, S. Tsao, and T. Heyne. 2012. Delta Flow Factors Influencing Stray Rate of Escaping Adult San Joaquin River Fall-Run Chinook Salmon (Oncorhynchus tshawytscha). San Francisco Estuary and Watershed Science 10(4). Available: https://escholarship.org/uc/item/6f88q6pf</a >.

Martin, C. D., P. D. Gaines, and R. R. Johnson. 2001. Estimating the Abundance of Sacramento River Winter Chinook Salmon with Comparisons to Adult Escapement. Red Bluff Research Pumping Plant Report Series, Volume 5. U.S. Fish and Wildlife Service. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626441.pdf</a >

Martin, B. T., A. Pike, S. N. John, N. Hamda, J. Roberts, S. T. Lindley, and E. M. Danner. 2017. Phenomenological vs. Biophysical Models of Thermal Stress in Aquatic Eggs. Ecology Letters 20(1):50–59. https://onlinelibrary.wiley.com/doi/full/10.1111/ele.12705</a >

Maslin, P., Lennon, M., Kindopp, J. and McKinney, W. 1997. Intermittent Streams as Rearing of Habitat for Sacramento River Chinook Salmon (Oncorhynchus Tshawytscha). California State University. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/CSPA%20et%20al/part2/aqua_279.pdf</a >

Maunder, M. N., and R. B. Deriso. 2011. A State-Space Multistage Life Cycle Model to Evaluate Population Impacts in the Presence of Density Dependence: Illustrated with Application to Delta Smelt (Hyposmesus transpacificus). Canadian Journal of Fisheries and Aquatic Science 68(7):1285–1306. Available: https://doi.org/10.1139/f2011-071</a >.

Maunder, M. N., R. B. Deriso, and C. H. Hanson. 2015. Use of State-Space Population Dynamics Models in Hypothesis Testing: Advantages over Simple Log-Linear Regressions for Modeling Survival, Illustrated with Application to Longfin Smelt (Spirinchus thaleichthys). Fisheries Research 164:102–111. https://www.sciencedirect.com/science/article/pii/S0165783614003105</a >

McCabe, G. T., and C. A. Tracy. 1994. Spawning and Early-Life History of White Sturgeon, Acipenser transmontanus, in the Lower Columbia River. Fishery Bulletin 92(4):760–772. https://spo.nmfs.noaa.gov/sites/default/files/pdf-content/1994/924/mccabe.pdf</a >

McCarraher, D., and R. W. Gregory. 1970. Adaptability and current status of introductions of Sacramento perch, Archoplites interruptus, in North America. Transactions of the American Fisheries Society 99(4):700–707. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11A_Aquatic_Spp_Life_Hist/McCarraher%20and%20Gregory_1970_Sacramento%20Perch.pdf</a >

McEnroe, M., and J. J. Cech, Jr. 1985. Osmoregulation in Juvenile and Adult White Sturgeon, Acipenser transmontanus. Environmental Biology of Fishes 14:23–30.

McEwan, D. 2001. Central Valley Steelhead. In Fish Bulletin 179(1): Contributions to the Biology of Central Valley Salmonids, edited by R. L. Brown, 1–44. Sacramento, CA: California Department of Fish and Game. https://escholarship.org/uc/item/6sd4z5b2</a >

McEwan, D. R., and T. Jackson. 1996. Steelhead Restoration and Management Plan for California. 22 February. California Department of Fish and Game, Sacramento, CA. https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&ved=2ahUKEwiG8vOBy7mBAxVrJkQIHWnmAsQQFnoECBEQAQ&url=https%3A%2F%2Fnrm.dfg.ca.gov%2FFileHandler.ashx%3FDocumentID%3D3490&usg=AOvVaw0yVl5vHEj6cLxDeUdgDr3c&opi=89978449</a >

Meek, M., M.R. Baerwald, M.R. Stephens, A. Goodbla, M.R. Miller, K.M.H. Tomalty, and B. May. 2016. Sequencing improves our ability to study threatened migratory species: Genetic population assignment in California’s Central Valley Chinook. Ecol Evol 6(21):7706–7716. https://doi.org/10.1002/ece3.2493</a >

Meng, L. and P. B. Moyle. 1995. Status of Splittail in the Sacramento–San Joaquin Estuary. Transactions of the American Fisheries Society 124(4):538–549. https://www.researchgate.net/publication/254329121_Status_of_Splittail_in_the_Sacramento-San_Joaquin_Estuary</a >

Merz, J. E., S. Hamilton, P. S. Bergman, and B. Cavallo. 2011. Spatial Perspective for Delta Smelt: A Summary of Contemporary Survey Data. California Fish and Game 97(4):164–189. Available: https://www.baydeltalive.com/assets/06942155460a79991fdf1b57f641b1b4/application/pdf/CFG_097-4_2011-2-DeltaSmelt1.pdf</a >. Accessed: June 10, 2020.

Merz, J., P. S. Bergman, J. F. Melgo, and S. Hamilton. 2013. Longfin Smelt: Spatial Dynamics and Ontogeny in the San Francisco Estuary, California. California Fish and Game 99(3):122–148. file:///C:/Users/msavage/Downloads/Pages%20from%2099-3,%20122%20to%20148%20smelt.pdf</a >

Mesick, C. 2001. The Effects of San Joaquin River Flows and Delta Export Rates during October on the Number of Adult San Joaquin Chinook Salmon that Stray. In Fish Bulletin 179(2): Contributions to the Biology of Central Valley Salmonids, edited by R. L. Brown, 139–161. Sacramento, CA: California Department of Fish and Game. http://www.sjrdotmdl.org/concept_model/phys-chem_model/documents/300001864.pdf</a >

Michel, C. J. 2019. Decoupling outmigration from marine survival indicates outsized influence of streamflow on cohort success for California’s Chinook salmon populations. Canadian Journal of Fisheries and Aquatic Sciences 76:1398–1410. https://cdnsciencepub.com/doi/full/10.1139/cjfas-2018-0140</a >

Michel, C. J., J. M. Smith, N. J. Demetras, D. D. Huff, and S. A. Hayes. 2018. Non-Native Fish Predator Density and Molecular-Based Diet Estimates Suggest Differing Impacts of Predator Species on Juvenile Salmon in the San Joaquin River, California. San Francisco Estuary and Watershed Science 16(4). Available: https://escholarship.org/uc/item/9cb0v4fz</a >. Accessed: November 3, 2020.

Miller, W. J. 2011. Revisiting Assumptions that Underlie Estimates of Proportional Entrainment of Delta Smelt by State and Federal Water Diversions from the Sacramento-San Joaquin Delta. San Francisco Estuary and Watershed Science 9(1). https://escholarship.org/uc/item/5941x1h8</a >

Miller, D. J., and R. N. Lea. 1972. Fish Bulletin 157: Guide to the Coastal Marine Fishes of California. Sacramento, CA: California Department of Fish and Game. http://www.nativefishlab.net/library/textpdf/15272.pdf</a >

Miller, W. J., B. F. J. Manly, D. D. Murphy, D. Fullerton, and R. R. Ramey. 2012. An Investigation of Factors Affecting the Decline of Delta Smelt (Hypomesus transpacificus) in the Sacramento–San Joaquin Estuary. Reviews in Fisheries Science 20(1):1–19. https://www.researchgate.net/publication/233229927_An_Investigation_of_Factors_Affecting_the_Decline_of_Delta_Smelt_Hypomesus_transpacificus_in_the_Sacramento-San_Joaquin_Estuary</a >

Mitchell, L., K. Newman, and R. Baxter. 2017. A Covered Cod End and Tow-Path Evaluation of Midwater Trawl Gear Efficiency for Catching Delta Smelt (Hypomesus transpacificus). San Francisco Estuary and Watershed Science 15(4). Available: https://escholarship.org/uc/item/4wj0979x</a >.

Moffett, J. 1949. The First Four Years of King Salmon Maintenance below Shasta Dam, Sacramento River, California. California Fish and Game 35(2):77–102.

Mount, J., W. Fleenor, B. Gray, B. Herbold, and W. Kimmerer. 2013. Panel Review of the Draft Bay-Delta Conservation Plan. Prepared for the Nature Conservancy and American Rivers. September. Saracino & Mount, LLC, Sacramento, CA. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Mora_etal_2018_Estimating_the_annual_spawning_run-size_and_popula.pdf</a >

Moyle, P. B. 1976. Inland Fishes of California. Berkeley, CA: University of California Press.

Moyle, P. B. 2002. Inland Fishes of California. Revised and expanded. Berkeley, CA: University of California Press.

Moyle, P. B., and W. A. Bennett. 2008. The Future of the Delta Ecosystem and Its Fish: Technical Appendix D. An appendix to Comparing Futures for the Sacramento–San Joaquin Delta. Public Policy Institute of California. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/sldmwa/moyleandbennett2008.pdf</a >.

Moyle, P. B., B. Herbold, D. E. Stevens, and L. W. Miller. 1992. Life History and Status of Delta Smelt in the Sacramento–San Joaquin Estuary, California. Transactions of the American Fisheries Society 121(1):67–77. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Moyle_etal_1992_Life%20History%20and%20Status%20of%20Delta%20Smelt%20in%20the%20Sacramento%E2%80%93San%20Joaquin%20Estuary,%20California.pdf</a >

Moyle, P. B., R. M. Yoshiyama, J. E. Williams, and E. D. Wikramanayake. 1995. Fish Species of Special Concern in California. Second edition. Davis, CA: Department of Wildlife and Fisheries Biology, University of California, Davis. Prepared for the California Department of Fish and Game, Rancho Cordova, CA. https://www.biologicaldiversity.org/species/fish/North_American_green_sturgeon/pdfs/fish_ssc.pdf</a >

Moyle, P. B., L. R. Brown, S. D. Chase, and R. M. Quiñones. 2009. Status and Conservation of Lampreys in California. In Biology, Management, and Conservation of Lampreys in North America: American Fisheries Society Symposium 72, edited by L. R. Brown, S. D. Chase, M. G. Mesa, R. J. Beamish, and P. B. Moyle, 279–292. Bethesda, MD: American Fisheries Society.

Moyle, P. B., R. M. Quiñones, J. V. Katz, and J. Weaver. 2015. Fish Species of Special Concern in California. Sacramento: California Department of Fish and Wildlife. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=107740&inline</a >. Accessed: January 5, 2022.

Moyle, P. B., L. R. Brown and J. R. Durand. 2016. Delta Smelt: Life History and Decline of a Once Abundant Species in the San Francisco Estuary. San Francisco Estuary and Watershed Science 14(2). Available: http://escholarship.org/uc/item/09k9f76s</a >. Accessed: November 3, 2020.

Mueller-Solger, A., C. Hall, A. Jassby, and C. Goldman. 2006. Food Resources for Zooplankton in the Sacramento–San Joaquin River Delta. Final Report. May 2006. CALFED Project ERP-01-N50/CALFED 2001-K221.

Murphy, D. D., and S. A. Hamilton. 2013. Eastern Migration or Marshward Dispersal: Exercising Survey Data to Elicit an Understanding of Seasonal Movement of Delta Smelt. San Francisco Estuary and Watershed Science 11(3). Available: https://escholarship.org/uc/item/4jf862qz</a >. Accessed: November 3, 2020.

Murphy, D. D., and P. S. Weiland. 2019. The Low-Salinity Zone in the San Francisco Estuary as a Proxy for Delta Smelt Habitat: A Case Study in the Misuse of Surrogates in Conservation Planning. Ecological Indicators 105:29–35. https://www.sciencedirect.com/science/article/pii/S1470160X1930398X</a >

Myers, J. M., R. G. Kope, G. J. Bryant, D. Teel, L. J. Leirheimer, T. C. Wainwright, W. S. Grant, F. W. Waknitz, K. Neely, S. T. Lindley, and R. S. Waples. 1998. Status review of Chinook Salmon from Washington, Idaho, Oregon and California. U.S. Department of Commerce, NOAA Technical Memo. NMFS-NWFSC-35. February. https://www.webapps.nwfsc.noaa.gov/assets/25/7190_07042012_124647_Myers.et.al.1998-rev.pdf</a >

Myrick, C. A. and J. J. Cech. 2004. Temperature Effects on Juvenile Anadromous Salmonids in California’s Central Valley: What Don’t We Know? Reviews in Fish Biology and Fisheries 14(1):113–123. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/Myrick%20and%20Cech%20%282004%29.pdf</a >

National Marine Fisheries Service. 1997. Proposed Recovery Plan for the Sacramento River Winter-Run Chinook Salmon. Long Beach, CA: National Marine Fisheries Service, Southwest Region. Available: https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11A_Aquatic_Spp_Life_Hist/NMFS_1997_Proposed%20Recovery%20Plan.pdf</a >

National Marine Fisheries Service. 1998. Factors Contributing to the Decline of Chinook Salmon: An Addendum to the 1996 West Coast Steelhead Factors for Decline Report. Protected Resources Division, National Marine Fisheries Service, Portland, OR. June. http://www.krisweb.com/biblio/gen_nmfs_nmfs_1998_chinffd.pdf</a >

National Marine Fisheries Service. 2005. Green Sturgeon (Acipenser medirostris) Status Review Update, February 2005. Biological review team, Santa Cruz Laboratory, Southwest Fisheries Science Center. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/NMFS_2005_Green%20Sturgeon%20(Acipenser%20medirostris)%20Status%20Review%20Update,%20February%202005.pdf</a >

National Marine Fisheries Service. 2008. Recovery Plan for Southern Resident Killer Whales (Orcinus orca). National Marine Fisheries Service, Northwest Region, Seattle, WA. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/NMFS_2008_Recovery%20Plan%20for%20Southern%20Resident%20Killer%20Whales%20(Orcinus%20orca).pdf</a >

National Marine Fisheries Service. 2009a. Recovery Plan for the Evolutionarily Significant Units of Sacramento River Winter-run Chinook Salmon and Central Valley Spring-run Chinook Salmon and the Distinct Population Segment of Central Valley Steelhead. Public Draft. Protected Resources Division, Sacramento CA.

National Marine Fisheries Service. 2009b. Biological Opinion and Conference Opinion on the Long-Term Operations of the Central Valley Project and State Water Project. National Oceanic and Atmospheric Administration, National Marine Fisheries Service, Southwest Region, Long Beach, CA. https://www.fisheries.noaa.gov/resource/document/biological-opinion-and-conference-opinion-long-term-operations-central-valley</a >

National Marine Fisheries Service. 2012. Final Recovery Plan for Central California Coast coho salmon Evolutionarily Significant Unit. National Marine Fisheries Service, Southwest Region, Santa Rosa, California. Available: https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/NMFS_2012_Recovery%20plan%20for%20the%20evolutionarily%20significant%20unit%20of%20Central%20California%20Coast%20coho%20salmon.pdf</a >

National Marine Fisheries Service. 2014. Recovery Plan for the Evolutionarily Significant Units of Sacramento River Winter-Run Chinook Salmon and Central Valley Spring-Run Chinook Salmon and the Distinct Population Segment of California Central Valley Steelhead. July 2014. California Central Valley Area Office, Sacramento, CA. https://www.fisheries.noaa.gov/resource/document/recovery-plan-evolutionarily-significant-units-sacramento-river-winter-run</a >

National Marine Fisheries Service. 2015. Southern Distinct Population Segment of the North American Green Sturgeon (Acipenser medirostris) 5-Year Review: Summary and Evaluation. National Marine Fisheries Service, West Coast Region, Long Beach, CA. https://www.fisheries.noaa.gov/resource/document/southern-distinct-population-segment-north-american-green-sturgeon-acipenser</a >

National Marine Fisheries Service. 2016a. 5-Year Status Review: Summary and Evaluation of Sacramento River Winter-Run Chinook Salmon ESU. National Marine Fisheries Service, West Coast Region. Sacramento, CA. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/NMFS_2016_5-Year%20Review%20Summary%20and%20Evaluation%20of%20Central%20Valley%20Spring-Run%20Chinook%20Salmon.pdf</a >

National Marine Fisheries Service. 2016b. 5-Year Review: Summary and Evaluation of Central Valley Spring-Run Chinook Salmon. National Marine Fisheries Service, West Coast Region. Sacramento, CA.

National Marine Fisheries Service. 2018. Draft Recovery Plan for the Southern Distinct Population Segment of North American Green Sturgeon (Acipenser medirostris). January. National Marine Fisheries Service, West Coast Region, Sacramento, CA. https://www.fisheries.noaa.gov/resource/document/final-recovery-plan-southern-distinct-population-segment-north-american-green</a >

National Marine Fisheries Service. 2019. Biological Opinion on Long-Term Operation of the Central Valley Project and the State Water Project. WCRO-2016-00069. October. West Coast Region, Sacramento, CA. National Marine Fisheries Service. 2020a. Researchers Probe Deaths of Central Valley Chinook, with Possible Ties to Ocean Changes. https://www.fisheries.noaa.gov/resource/document/biological-opinion-reinitiation-consultation-long-term-operation-central-valley</a >

National Marine Fisheries Service. 2020a. Researchers Probe Deaths of Central Valley Chinook, with Possible Ties to Ocean Changes. https://www.fisheries.noaa.gov/feature-story/researchers-probe-deaths-central-valley-chinook-possible-ties-ocean-changes</a >

Last updated by West Coast Regional Office on 12/1/2020. Available: https://www.fisheries.noaa.gov/feature-story/researchers-probe-deaths-central-valley-chinook-possible-ties-ocean-changes</a >.

National Marine Fisheries Service. 2020b. San Joaquin River Restoration Program. Last updated by West Coast Regional Office on 01/15/2020. Available: https://www.fisheries.noaa.gov/west-coast/habitat-conservation/san-joaquin-river-restoration#san-joaquin-river-spring-run-chinook-salmon-reintroduction</a >.

National Oceanic and Atmospheric Administration West Coast Region and Washington Department of Fish and Wildlife. 2018. Southern Resident Killer Whale Priority Chinook Stocks Report. June 22. https://media.fisheries.noaa.gov/dam-migration/srkw_priority_chinook_stocks_conceptual_model_report___list_22june2018.pdf</a >

National Park Service. 1999. Whiskeytown-Shasta-Trinity National Recreation Area General Management Plan and Environmental Impact Statement. June. Pacific West Region. Available: http://www.nps.gov/whis/parkmgmt/upload/GMPfinal.pdf</a >.

Newcomb, J. and L. Pierce. 2010. Low Dissolved Oxygen Levels in the Stockton Deep Water Shipping Channel: Adverse Effects on Salmon and Steelhead and Potential Beneficial Effects of Raising Dissolved Oxygen Levels with the Aeration Facility. Fish Passage Improvement Program, FloodSAFE Environmental Stewardship and Statewide Resources Office, Department of Water Resources. 28 pp. http://www.sjrdotmdl.org/library_folder/01-11/Low-DO-effects-in-the-Stockton-DWSC.pdf</a >

Newman, K. B. 2008. Sample design-based methodology for estimating delta smelt abundance. San Francisco Estuary and Watershed Science 6(3). https://escholarship.org/uc/item/99p428z6</a >

Newman, K. B., and P. L. Brandes. 2010. Hierarchical Modeling of Juvenile Chinook Salmon Survival as a Function of Sacramento–San Joaquin Delta Water Exports. North American Journal of Fisheries Management 30(1):157–169. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626199.pdf</a >

Newman, K. B., and J. Rice. 2002. Modeling the Survival of Chinook Salmon Smolts Outmigrating Through the Lower Sacramento River System. Journal of the American Statistical Association 97(460):983–993. https://www.jstor.org/stable/3085820</a >

Nielsen, J. L., S. A. Pavey, T. Wiacek, and I. Williams. 2005. Genetics of Central Valley O. mykiss populations: Drainage and Watershed Scale Analysis. San Francisco Estuary and Watershed Science 3(2). Available: https://escholarship.org/uc/item/6sc3905g</a >.

Nobriga, M. L. 2002. Larval Delta Smelt Diet Composition and Feeding Incidence: Environmental and Ontogenetic Influences. California Fish and Game 88(4):149–164. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Nobriga_2002_Larval%20Delta%20Smelt%20Diet%20Composition%20and%20Feeding%20Incidence%20Environmental%20and%20Ontogenetic%20Influences.pdf</a >

Nobriga, M. L., and P. Cadrett. 2001. Differences Among Hatchery and Wild Steelhead: Evidence from Delta Fish Monitoring Programs. IEP Newsletter 14(3):30–38. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Nobriga_Cadrett_2001_Differences%20Among%20Hatchery%20and%20Wild%20Steelhead.pdf</a >

Nobriga, M. L., and F. Feyrer. 2007. Shallow-Water Piscivore-Prey Dynamics in California’s Sacramento–San Joaquin Delta. San Francisco Estuary and Watershed Science 5(2). Available: http://escholarship.org/uc/item/387603c0</a >.

Nobriga, M. L., and F. Feyrer. 2008. Diet composition in San Francisco Estuary striped bass: does trophic adaptability have its limits? Environmental Biology of Fishes 83(4):495–503. https://www.researchgate.net/profile/Matthew-Nobriga/publication/225553609_Diet_composition_in_San_Francisco_Estuary_striped_bass_Does_trophic_adaptability_have_its_limits/links/558c15d208ae1f30aa808fa6/Diet-composition-in-San-Francisco-Estuary-striped-bass-Does-trophic-adaptability-have-its-limits.pdf</a >

Nobriga, M. L., and J. A. Rosenfield. 2016. Population Dynamics of an Estuarine Forage Fish: Disaggregating Forces Driving Long-Term Decline of Longfin Smelt in California’s San Francisco Estuary. Transactions of the American Fisheries Society 145(1):44–58. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Nobriga_Rosenfield_2016_PopulationDynamicsEstuarineForageFish.pdf</a >

Nobriga, M. L., and W. E. Smith. 2020. Did a Shifting Ecological Baseline Mask the Predatory Effect of Striped Bass on Delta Smelt? San Francisco Estuary and Watershed Science 18(1). Available: https://escholarship.org/uc/item/46f3j55m</a >.

Nobriga M. L., F. Feyrer, R. D. Baxter, and M. Chotkowski. 2005. Fish Community Ecology in an Altered River Delta: Spatial Patterns in Species Composition, Life History Strategies, and Biomass. Estuaries 28(5):776–785. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/NobrigaEtAl_2005_fish-comm-ecology-altered.pdf</a >

Nobriga, M. L., T. R. Sommer, F. Feyrer, and K. Fleming. 2008. Long-Term Trends in Summertime Habitat Suitability for Delta Smelt. San Francisco Estuary and Watershed Science 6(1). Available: http://escholarship.org/uc/item/5xd3q8tx</a >.

Nobriga, M. L., E. Loboschefsky, and F. Feyrer. 2013. Common Predator, Rare Prey: Exploring Juvenile Striped Bass Predation on Delta Smelt in California’s San Francisco Estuary. Transactions of the American Fisheries Society 142(6):1563–1575. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Nobriga_etal_2013_Common%20Predator,%20Rare%20Prey%20Exploring%20Juvenile%20Striped%20Bass%20Predation%20on%20Delta%20Smelt%20in%20California%E2%80%99s%20San%20Francisco%20Estuary.pdf</a >

Orcutt, H. G. 1950. Fish Bulletin 78: The Life History of the Starry Flounder, Platichthys stellatus (Pallas). California Department of Fish and Game. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Orcutt_1950_Fish%20Bulletin%2078.pdf</a >

Orsi, J., and W. L. Mecum. 1986. Zooplankton Distribution and Abundance in the Sacramento–San Joaquin Delta in Relation to Certain Environmental Factors. Estuaries 9(4B):326–339. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Orsi&Mecum_1986_Zooplankton.pdf</a >

Pacific States Marine Fisheries Commission 2014. Juvenile Salmonid Emigration Monitoring in the Lower American River, California January – June 2013. Unpublished Report prepared for the U.S. Fish and Wildlife Service and California Department of Fish and Wildlife, Sacramento, California. 54 pp. https://www.calfish.org/Portals/2/Programs/CentralValley/LAR_RST/docs/2014%20LAR%20RST%20Emigration%20Monitoring.pdf</a >

Painter, R. L., L. Wixom, and L. Meinz. 1979. American Shad Management Plan for the Sacramento River Drainage. Anadromous Fish Conservation Act Project AFS-17, Job 5. California Department of Fish and Game, Sacramento, CA.

Palmer-Zwahlen, M., V. Gusman, and B. Kormos. 2018. Recovery of Coded-Wire Tags from Chinook Salmon in California’s Central Valley Escapement, Inland Harvest, and Ocean Harvest in 2013. Joint Pacific States Marine Fisheries Commission and California Department of Fish and Wildlife Report. October 2018. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Palmer-Zwahlen_etal_2018_Recovery%20of%20Coded-Wire%20Tags%20from%20Chinook%20Salmon%20in%20California%E2%80%99s%20Central%20Valley%20Escapement,%20Inland%20Harvest,%20and%20Ocean%20Harvest%20in%202013.pdf</a >

Parker, C., J. Hobbs, M. Bisson, and A. Barros. 2017. Do Longfin Smelt Spawn in San Francisco Bay Tributaries? IEP Newsletter 30(1):29–36. https://www.baydeltalive.com/assets/e106ca2a359a122e74e33ef183a0fb4a/application/pdf/IEP_Vol30_1.pdf</a >

Pearson, D. E. 1989. Survey of Fishes and Water Properties of South San Francisco Bay, California, 1973–82. NOAA-NMFS Technical Report 78. August. U.S. Department of Commerce. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Pearson_1989_Survey%20of%20Fishes%20and%20Water%20Properties%20of%20South%20San%20Francisco%20Bay,%20California,%201973%E2%80%9382.pdf</a >

Perry, R. W., J. G. Romine, S. J. Brewer, P. E. LaCivita, W. N. Brostoff, and E. D. Chapman. 2012. Survival and Migration Route Probabilities of Juvenile Chinook Salmon in the Sacramento–San Joaquin River Delta During the Winter of 2009–10. U.S. Geological Survey Open-File Report 2012-1200. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Perry_etal_2012_Survival%20and%20Migration%20Route%20Probabilities%20of%20Juvenile%20Chinook%20Salmon%20in%20the%20Sacramento%E2%80%93San%20Joaquin%20River%20Delta%20During%20the%20Winter%20of%202009%E2%80%9310.pdf</a >

Perry, R. W., P. L. Brandes, J. R. Burau, A. P. Klimley, B. MacFarlane, C. J. Michel, and J. R. Skalski. 2013. Sensitivity of Survival to Migration Routes Used by Juvenile Chinook Salmon to Negotiate the Sacramento–San Joaquin River Delta. Environmental Biology of Fishes 96:381–392. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Perry_etal_2013_Sensitivity%20of%20Survival%20to%20Migration%20Routes%20Used%20by%20Juvenile%20Chinook%20Salmon%20to%20Negotiate%20the%20Sacramento%E2%80%93San%20Joaquin%20River%20Delta.pdf</a >

Perry, R. W., A. C. Pope, J. G. Romine, P. L. Brandes, J. R. Burau, A. R. Blake, A. J. Ammann, C. J. Michel. 2018. Flow-Mediated Effects on Travel Time, Routing, and Survival of Juvenile Chinook Salmon in a Spatially Complex, Tidally Forced River Delta. Canadian Journal of Fisheries and Aquatic Sciences 75(11):1886–1901. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Perry_et_al_2018_Flow-mediated_effects_travel_time.pdf</a >

Petersen, J. H., and J. F. Kitchell. 2001. Climate Regimes and Water Temperature Changes in the Columbia River: Bioenergetic Implications for Predators of Juvenile Salmon. Canadian Journal of Fisheries and Aquatic Sciences 58(9):1831–1841.

Petersen Lewis, R. 2009. Yurok and Karuk traditional ecological knowledge: insights into Pacific lamprey populations of the Lower Klamath Basin. Pages 1-39 in L. R. Brown, S. D. Chase, M. G. Mesa, R. J. Beamish, and P. B. Moyle, editors. Biology, management, and conservation of lampreys in North America. American Fisheries Society, Symposium 72, Bethesda, Maryland.

Peterson, J. T., and M. F. Barajas. 2018. An Evaluation of Three Fish Surveys in the San Francisco Estuary, 1995–2015. San Francisco Estuary and Watershed Science 16(4). https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Peterson_Barajas_2018_An%20Evaluation%20of%20Three%20Fish%20Surveys%20in%20the%20San%20Francisco%20Estuary,%201995%E2%80%932015.pdf</a >

Peterson, M. L., A. N. Fuller, and D. Demko. 2017. Environmental Factors Associated with the Upstream Migration of Fall-Run Chinook Salmon in a Regulated River. North American Journal of Fisheries Management 37(1):78–93.

Phillis, C. C., A. M. Sturrock, R. C. Johnson, P. K. Weber. 2018. Endangered Winter-Run Chinook Salmon Rely on Diverse Rearing Habitats in a Highly Altered Landscape. January. Biological Conservation 217:358–362. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Phillis_etal_2018_Endangered%20Winter-Run%20Chinook%20Salmon%20Rely%20on%20Diverse%20Rearing%20Habitats%20in%20a%20Highly%20Altered%20Landscape.pdf</a >

Pickard, A., A. Grover, and F. Hall. 1982. An Evaluation of Predator Composition at Three Locations on the Sacramento River. Technical Report No. 2. Interagency Ecological Study Program for the Sacramento–San Joaquin Estuary. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Pickard_etal_1982_An%20Evaluation%20of%20Predator%20Composition%20at%20Three%20Locations%20on%20the%20Sacramento%20River.pdf</a >

Pinnix, W. D., T. A. Shaw, and N. J. Hetrick. 2004. Fish Communities in Eelgrass, Oyster Culture, and Mud Flat Habitat of North Humboldt Bay, California Progress Report. U.S. Fish and Wildlife Service. Arcata Fisheries Technical Report Number AFWO-F-07-04. Arcata, CA. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Pinnix_etal_2004.%20Fish%20Communities%20in%20Eelgrass,%20Oyster%20Culture,%20and%20Mud%20Flat%20Habitat%20of%20North%20Humboldt%20Bay,%20California%20Progress%20Report.pdf</a >

Plumb, J., A. Hansen, N. Adams, S. Evans, and J. Hannon. 2019. Movement and Apparent Survival of Acoustically Tagged Juvenile Late-Fall Run Chinook Salmon Released Upstream of Shasta Reservoir, California. San Francisco Estuary and Watershed Science 17(3).

Polansky, L., K. B. Newman and M. L. Nobriga and L. Mitchell. 2018. Spatiotemporal Models of an Estuarine Fish Species to Identify Patterns and Factors Impacting Their Distribution and Abundance. Estuaries and Coasts 41(2):572–581. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Polansky_etal_2018.%20Spatiotemporal%20Models%20of%20an%20Estuarine%20Fish%20Species%20to%20Identify%20Patterns%20and%20Factors%20Impacting%20Their%20Distribution%20and%20Abundance.pdf</a >

Polansky, L., L. Mitchell, and K. B. Newman. 2019. Using Multistage Design-Based Methods to Construct Abundance Indices and Uncertainty Measures for Delta Smelt. Transactions of the American Fisheries Society 148(4):710–724. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Polansky_etal_2019.%20Using%20Multistage%20Design-Based%20Methods%20to%20Construct%20Abundance%20Indices%20and%20Uncertainty%20Measures%20for%20Delta%20Smelt.pdf</a >

Polansky, L., K. B. Newman, and L. Mitchell. 2021. Improving Inference for Nonlinear State-Space Models of Animal Population Dynamics Given Biased Sequential Life Stage Data. Biometrics 77(1):352–361. https://onlinelibrary.wiley.com/doi/full/10.1111/biom.13267</a >

Pope, A. C., R. W. Perry, D. J. Hance, and H. C. Hansel. 2018. Survival, Travel Time, and Utilization of Yolo Bypass, California, by Outmigrating Acoustic-Tagged Late-Fall Chinook Salmon. U.S. Geological Survey Open-File Report 2018-1118. Reston, VA. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Pope_etal_2018.%20Survival,%20Travel%20Time,%20and%20Utilization%20of%20Yolo%20Bypass,%20California,%20by%20Outmigrating%20Acoustic-Tagged%20Late-Fall%20Chinook%20Salmon.pdf</a >

Pope, A. C., R. W. Perry, B. N. Harvey, D. J. Hance, and H. C. Hansel. 2021. Juvenile Chinook Salmon Survival, Travel Time, and Floodplain Use Relative to Riverine Channels in the Sacramento–San Joaquin River Delta. Transactions of the American Fisheries Society 150(1):38-55.

Poytress, W. R., J. J. Gruber, C. E. Praetorius, and J. P. Van Eenennaam. 2013. 2012 Upper Sacramento River Green Sturgeon Spawning Habitat and Young-of-the-Year Migration Surveys. Annual Report of U.S. Fish and Wildlife Service to Bureau of Reclamation. Red Bluff, CA. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Poytress_etal_2013.%202012%20Upper%20Sacramento%20River%20Green%20Sturgeon%20Spawning%20Habitat%20and%20Young-of-the-Year%20Migration%20Surveys.pdf</a >

Poytress, W. R., J. J. Gruber, F. D. Carrillo and S. D. Voss. 2014. Compendium Report of Red Bluff Diversion Dam Rotary Trap Juvenile Anadromous Fish Production Indices for Years 2002-2012. Report of U.S. Fish and Wildlife Service to California Department of Fish and Wildlife and Bureau of Reclamation.

Provins, S. S., and C. D. Chamberlain. 2019. Distribution and Abundance of Rainbow Trout/Steelhead and Late-Fall Run Chinook Salmon Redds in Clear Creek, Winter 2011 to Spring 2012. U.S. Fish and Wildlife Service, Red Bluff Fish and Wildlife Office, Red Bluff, CA. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626331.pdf</a >

Purkey, D. R., B. Joyce, S. Vicuna, M. W. Hanemann, L. L. Dale, D. Yates, and J. A. Dracup. 2008. Robust Analysis of Future Climate Change Impacts on Water for Agriculture and Other Sectors: A Case Study in the Sacramento Valley. Climatic Change 87(1):109–122. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Purkey_etal_2008.%20Robust%20Analysis%20of%20Future%20Climate%20Change%20Impacts%20on%20Water%20for%20Agriculture%20and%20Other%20Sectors.pdf</a >

Radtke, L. D. 1966. Distribution of Smelt, Juvenile Sturgeon, and Starry Flounder in the Sacramento–San Joaquin Delta with Observations on Food of Sturgeon. In Fish Bulletin 136: Ecological Studies of the Sacramento–San Joaquin Delta, Part II—Fishes of the Delta, edited by S. L. Turner and D. W. Kelley, 115–129. Sacramento, CA: California Department of Fish and Game. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Radtke_1966.%20Distribution%20of%20Smelt,%20Juvenile%20Sturgeon,%20and%20Starry%20Flounder%20in%20the%20Sacramento%E2%80%93San%20Joaquin%20Delta%20with%20Observations%20on%20Food%20of%20Sturgeon.pdf</a >

Reis-Santos, P., S. D. McCormick, and J. M. Wilson. 2008. Ionoregulatory Changes during Metamorphosis and Salinity Exposure of Juvenile Sea Lamprey (Petromyzon marinus L.). The Journal of Experimental Biology 211:978–988. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Reis-Santos_etal_2008.%20Ionoregulatory%20Changes%20during%20Metamorphosis%20and%20Salinity%20Exposure%20of%20Juvenile%20Sea%20Lamprey%20(Petromyzon%20marinus%20L.).pdf</a >

Robinson, T. C., and J. M Bayer. 2005. Upstream Migration of Pacific Lampreys in the John Day River, Oregon: Behavior, Timing, and Habitat Use. Northwest Science 79(2&3):106–119. https://www.researchgate.net/publication/236558648_Upstream_Migration_of_Pacific_Lampreys_in_the_John_Day_River_Behavior_Timing_and_Habitat_Use_Annual_Report_2000</a >

Rose, K. A., W. J. Kimmerer, K. P. Edwards and W. A. Bennett. 2013a. Individual-Based Modeling of Delta Smelt Population Dynamics in the Upper San Francisco Estuary: I. Model Description and Baseline Results. Transactions of the American Fisheries Society 142(5):1238–1259. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Rose_etal_2013a.%20Individual-Based%20Modeling%20of%20Delta%20Smelt%20Population%20Dynamics%20in%20the%20Upper%20San%20Francisco%20Estuary%20I.pdf</a >

Rose, K. A., W. J. Kimmerer, K. P. Edwards and W. A. Bennett. 2013b. Individual-Based Modeling of Delta Smelt Population Dynamics in the Upper San Francisco Estuary: II. Alternative Baselines and Good versus Bad Years. Transactions of the American Fisheries Society 142(5):1260–1272. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Rose_etal_2013b.%20Individual-Based%20Modeling%20of%20Delta%20Smelt%20Population%20Dynamics%20in%20the%20Upper%20San%20Francisco%20Estuary%20II.pdf</a >

Rosenfield, J. A. 2010. Life History Conceptual Model and Sub-Models for Longfin Smelt, San Francisco Estuary Population for the Delta Regional Ecosystem Restoration Implementation Plan. May. Sacramento, CA. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Rosenfield_2010.%20Life%20History%20Conceptual%20Model%20and%20Sub-Models%20for%20Longfin%20Smelt,%20San%20Francisco%20Estuary%20Population%20for%20the%20Delta%20Regional%20Ecosystem%20Restoration%20Implementation%20Plan.pdf</a >

Rosenfield, J. A., and R. D. Baxter. 2007. Population Dynamics and Distribution Patterns of Longfin Smelt in the San Francisco Estuary. Transactions of the American Fisheries Society 136(6):1577–1592. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Rosenfield&Baxter_2007_PopDyn-distri-patterns-LFS.pdf</a >

Rutter, C. 1908. The Fishes of the Sacramento–San Joaquin Basin, with a Study of Their Distribution and Variation. Document No. 637. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Rutter_1908_The%20Fishes%20of%20the%20Sacramento%E2%80%93San%20Joaquin%20Basin,%20with%20a%20Study%20of%20Their%20Distribution%20and%20Variation.pdf</a >

Sabal, M. C., C. J. Michel, J. M. Smith, A. Hampton, and S. A. Hayes. 2019. Seasonal Movement Patterns of Striped Bass (Morone saxatilis) in Their Nonnative Range. Estuaries and Coasts 42:567–579. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Sabal_etal_2019.%20Seasonal%20Movement%20Patterns%20of%20Striped%20Bass%20(Morone%20saxatilis)%20in%20Their%20Nonnative%20Range.pdf</a >

Sabal, M. C., E. L. Hazen, S. J. Bograd, R. B. MacFarlane, I. D. Schroeder, S. A. Hayes, J. A. Harding, K. L. Scales, P. I. Miller, and A. J. Ammann. 2020. California Current Seascape Influences Juvenile Salmon Foraging Ecology at Multiple Scales. Marine Ecology Progress Series 634:159–173. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Sabal_etal_2020.%20California%20Current%20Seascape%20Influences%20Juvenile%20Salmon%20Foraging%20Ecology%20at%20Multiple%20Scales.pdf</a >

Saiki, M. K. 1984. Environmental Conditions and Fish Faunas in Low Elevation Rivers on the Irrigated San Joaquin Valley Floor, California. California Fish and Game 70:145–157.

San Joaquin River Group Authority. 2010. 2009 Annual Technical Report on Implementation and Monitoring of the San Joaquin River Agreement and the Vernalis Adaptive Management Plan (VAMP). Prepared for the California Water Resources Control Board in compliance with D-1641. San Joaquin River Group Authority.

San Joaquin River Group Authority. 2011. 2010 Annual Technical Report on Implementation and Monitoring of the San Joaquin River Agreement and the Vernalis Adaptive Management Plan (VAMP). Prepared for the California Water Resources Control Board in compliance with D-1641. San Joaquin River Group Authority.

San Joaquin River Group Authority. 2013. 2011 Annual Technical Report on Implementation and Monitoring of the San Joaquin River Agreement and the Vernalis Adaptive Management Plan. Prepared for the California Water Resource Control Board in compliance with D-1641. February. San Joaquin River Group Authority.

Satterthwaite, W. H., F. Cordoleani, M. R. O’Farrell. 2018. Central Valley Spring-Run Chinook Salmon and Ocean Fisheries: Data Availability and Management Possibilities. San Francisco Estuary and Watershed Science 16(1). Available: https://escholarship.org/uc/item/1258q4ms</a >.

Schaffter, R. 1997. White Sturgeon Spawning Migrations and Location of Spawning Habitat in the Sacramento River, California. California Department of Fish and Game 83:1–20. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1112%20Shaffter_et_al_1997_white_sturgeon_spwaning_SacR.pdf</a >

Schick, R. S., A. L. Edsall, and S. T. Lindley. 2005. Historical and Current Distribution of Pacific Salmonids in the Central Valley, CA. Technical Memorandum 369. National Marine Fisheries Service, Santa Cruz, CA. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/SchickEtAl_2005_hist-current-dist-pac-salmonids.PDF</a >

Schraml, C. M., J. T. Earley, and C. D. Chamberlain. 2018. Brood Year 2011 Juvenile Salmonid Monitoring in Clear Creek, California. USFWS Report. U.S. Fish and Wildlife Service, Red Bluff Fish and Wildlife Office, Red Bluff, CA. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Schraml_etal_2018.%20Brood%20Year%202011%20Juvenile%20Salmonid%20Monitoring%20in%20Clear%20Creek,%20California.pdf</a >

Schreier, B. M., M. R. Baerwald, J. L. Conrad, G. Schumer, and B. May. 2016. Examination of Predation on Early Life Stage Delta Smelt in the San Francisco Estuary Using DNA Diet Analysis. Transactions of the American Fisheries Society 145(4):723–733. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/SchreierEtAl_2016_Examination.pdf</a >

Schultz, L., M. Mayfield, G. Sheoships, L. Wyss, B. Clemens, B. Chasco, and C. Schreck. 2014. The Distribution and Relative Abundance of Spawning and Larval Pacific Lamprey in the Willamette River Basin. Final Report to the Columbia Inter-Tribal Fish Commission for Project Years 2011–2014. May 2014. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Schulz_etal_2014.%20The%20Distribution%20and%20Relative%20Abundance%20of%20Spawning%20and%20Larval%20Pacific%20Lamprey%20in%20the%20Willamette%20River%20Basin.%20Final%20Report%20to%20the%20Columbia%20Inter-Tribal%20Fish%20Commission%20for%20Project%20Years%202011%E2%80%932014.pdf</a >

Schultz, A.A., L. Grimaldo, J. Hassrick, A. Kalmbach, A. Smith, O. Burgess, D. Barnard, and J. Brandon. 2019. Effect of Isohaline (X2) and Region on Delta Smelt Habitat, Prey and Distribution During the Summer and Fall: Insights into Managed Flow Actions in a Highly Modified Estuary. Pages 237–302 in A. A. Schultz, editor. Directed Outflow Project: Technical Report 1. November. Bureau of Reclamation, Bay-Delta Office, Mid-Pacific Region, Sacramento, CA. https://www.usbr.gov/mp/bdo/docs/directed-outflow-project-tech-report1.pdf</a >

Seesholtz A., B. J. Cavallo, J. Kindopp, and R. Kurth. 2004. Juvenile Fishes of the Lower Feather River: Distribution, Emigration Patterns, and Associations with Environmental Variables. In Early Life History of Fishes in the San Francisco Estuary and Watershed: American Fisheries Society Symposium 39, edited by F. Feyrer, L. R. Brown, R. L. Brown, and J. J. Orsi, 141–168. Bethesda, MD: American Fisheries Society.

Seesholtz, A. M., M. J. Manuel, and J. P. Van Eenennaam. 2015. First Documented Spawning and Associated Habitat Conditions for Green Sturgeon in the Feather River, California. Environmental Biology of Fishes 98(3):905–912. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Seesholtz_et_al_2015_Green_sturgeon_Feather_river.pdf</a >

Skinner, J. E. 1962. An Historical Review of the Fish and Wildlife Resources of the San Francisco Bay Area. Water Projects Branch Report No. 1. California Department of Fish and Game. Sacramento, CA. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Skinner_1962_An%20Historical%20Review%20of%20the%20Fish%20and%20Wildlife%20Resources%20of%20the%20San%20Francisco%20Bay%20Area.pdf</a >

Slater, S. B. 2008. Feeding Habits of Longfin Smelt in the Upper San Francisco Estuary. Poster Session, 2008 CALFED Science Conference. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=98374</a >. Accessed: September 9, 2016.

Slater, S. B., and R. D. Baxter. 2014. Diet, Prey Selection, and Body Condition of Age-0 Delta Smelt, in the Upper San Francisco Estuary. San Francisco Estuary Watershed Science 12(3). doi: http://dx.doi.org/10.15447/sfews.2014v12iss3art1</a >.

Slater, S. B., A. Schultz, B.G. Hammock, A. Hennessy, and C. Burdi. 2019. Chapter 1: Patterns of Zooplankton Consumption by Juvenile and Adult Delta Smelt (Hypomesus transpacificus). Pages 9–54 in A. A. Schultz (ed.), Directed Outflow Project: Technical Report 1. Bureau of Reclamation, Bay-Delta Office, Mid-Pacific Region, Sacramento, CA. November 2019. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Slater_etal_2019_Chap_1_Delta_Smelt.pdf</a >

Smith, W. E. 2019. Integration of Transport, Survival, and Sampling Efficiency in a Model of South Delta Entrainment. San Francisco Estuary and Watershed Science 17(4). Available: https://escholarship.org/uc/item/893826f3</a >.

Smith, S. E., and S. Kato. 1979. The Fisheries of San Francisco Bay: Past, Present, and Future. In San Francisco Bay: The Urbanized Estuary, edited by T. J. Conomos, 445–468. Pacific Division, American Association for the Advancement of Science, San Francisco, CA. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Smith_Kato_1979_FisheriesofSanFranciscoBay.PDF</a >

Smith, W. E., K. B. Newman, and L. Mitchell. 2020. A Bayesian Hierarchical Model of Postlarval Delta Smelt Entrainment: Integrating Transport, Length Composition, and Sampling Efficiency in Estimates of Loss. Canadian Journal of Fisheries and Aquatic Sciences 77:789–813. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Smith_etal_%202020.%20A%20Bayesian%20Hierarchical%20Model%20of%20Postlarval%20Delta%20Smelt%20Entrainment.pdf</a >

SSmith, W.E., Polansky, L. and Nobriga, M.L. 2021. Disentangling risks to an endangered fish: using a state-space life cycle model to separate natural mortality from anthropogenic losses. Canadian Journal of Fisheries and Aquatic Sciences 78(8):1008–1029. https://cdnsciencepub.com/doi/10.1139/cjfas-2020-0251</a >

Snider, B. and R. G. Titus. 1995. Lower American River Emigration Survey November 1993-July 1994. Calif. Dept. Fish Game, Environmental Services Division, unpublished report. 102 pp.

Snider, B. R. and R. G. Titus. 2000. Timing, Composition, and Abundance of Juvenile Anadromous Salmonid Emigration in the Sacramento River Near Knights Landing. October 1997-September 1998. December. California Department of Fish and Game, Habitat Conservation Division, Native Anadromous Fish and Watershed Branch, Stream Evaluation Program. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Snider_Titus_2000_Timing,%20Composition,%20and%20Abundance%20of%20Juvenile%20Anadromous%20Salmonid%20Emigration%20in%20the%20Sacramento%20River%20Near%20Knights%20Landing.pdf</a >

Snider, B. and R. Titus. 2002. Lower American River Emigration Survey October 1998–September 1999. California Department of Fish and Game, Habitat Conservation Division, Stream Evaluation Program.

Sommer, T. 2007. The Decline of Pelagic Fishes in the San Francisco Estuary: An Update. Presented to the California State Water Resources Control Board, Sacramento, CA, March 22, 2007. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/pelagic_organism/docs/dwr_032207sommer.pdf</a >.

Sommer, T. and F. Mejia. 2013. A Place to Call Home: A Synthesis of Delta Smelt Habitat in the Upper San Francisco Estuary. San Francisco Estuary and Watershed Science 11(2). Available: https://escholarship.org/uc/item/32c8t244</a >.

Sommer, T. R., R. Baxter, B. Herbold. 1997. Resilience of Splittail in the Sacramento–San Joaquin Estuary. Transactions of the American Fisheries Society 126(6):961–976. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/SommerEtAl_1997_Resilience.pdf</a >

Sommer, T. R., M. L. Nobriga, W. C. Harrell, W. Batham, and W. J. Kimmerer. 2001. Floodplain Rearing of Juvenile Chinook Salmon: Evidence of Enhanced Growth and Survival. Canadian Journal of Fisheries and Aquatic Sciences 58(2):325–333. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Sommer_etal_2001.%20Floodplain%20Rearing%20of%20Juvenile%20Chinook%20Salmon%20Evidence%20of%20Enhanced%20Growth%20and%20Survival.pdf</a >

Sommer, T. R., W. C. Harrell, and M. L. Nobriga. 2005. Habitat Use and Stranding Risk of Juvenile Chinook Salmon on a Seasonal Floodplain. North American Journal of Fisheries Management 25:1493–1504. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626534.pdf</a >

Sommer, T., C. Armor, R. Baxter, R. Breuer, L. Brown, M. Chotkowski, S. Culberson, F. Feyrer, M. Gingras, B. Herbold, W. Kimmerer, A. Mueller-Solger, M. Nobriga, and K. Souza. 2007. The Collapse of Pelagic Fishes in the Upper San Francisco Estuary. Fisheries 32(6):270–277. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/SommerEtAl_2007_CollapsePelagic.pdf</a >

Sommer, T. R., W. C. Harrell, Z. Matica, and F. Feyrer. 2008. Habitat Associations and Behavior of Adult and Juvenile Splittail (Cyprinidae: Pogonichthys macrolepidotus) in a Managed Seasonal Floodplain Wetland. San Francisco Estuary and Watershed Science 6(2). Available: http://www.escholarship.org/uc/item/85r15611</a >.

Sommer, T. C., Mejia, F., Nobriga, M. L., Feyrer, F., and L. Grimaldo. 2011. The Spawning Migration of Delta Smelt in the Upper San Francisco Estuary. San Francisco Estuary and Watershed Science, 9(2). San Francisco Estuary and Watershed Science, John Muir Institute of the Environment, UC Davis. Available: http://escholarship.org/uc/item/86m0g5sz</a >.

Sommer, T. R., W. C. Harrell, and F. Feyrer. 2014. Large-Bodied Fish Migration and Residency in a Flood Basin of the Sacramento River, California, USA. Ecology of Freshwater Fish 23(3):414–423. https://www.researchgate.net/publication/264453764_Large-bodied_fish_migration_and_residency_in_a_flood_basin_of_the_Sacramento_River_California_USA</a >

Speegle, J., J. Kirsch, and J. Ingram. 2013. Annual Report: Juvenile Fish Monitoring During the 2010 and 2011 Field Seasons within the San Francisco Estuary, California. January. U.S. Fish and Wildlife Service, Stockton Fish and Wildlife Office, Lodi, CA. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Speegle_etal_2013_Annual%20Report%20Juvenile%20Fish%20Monitoring%20During%20the%202010%20and%202011%20Field%20Seasons%20within%20the%20San%20Francisco%20Estuary,%20California.pdf</a >

Stanislaus River Fish Group. 2003. A Plan to Restore Anadromous Fish Habitat in the Lower Stanislaus River. Review Draft. May 31.

Stanislaus River Fish Group. 2004. A Summary of Fisheries Research in the Lower Stanislaus River. Working Draft. March 10.

Stanley, S. E., P. B. Moyle, and H. B. Shaffer. 1995. Allozyme Analysis of Delta Smelt, Hypomesus transpacificus, and Longfin Smelt, Spirinchus thaleichthys, in the Sacramento-San Joaquin Estuary, California. Copeia 2:390–396.

State Water Resources Control Board. 2015. Response from U.S. Bureau of Reclamation on New Melones Operations. E-mail from Ronald Milligan (Bureau of Reclamation) to Tom Howard (State Water Resources Control Board) with attachments. April 8. Available: http://www.waterboards.ca.gov/waterrights/water_issues/programs/drought/tucp/index.shtml</a >.

Steel, A., M. Thomas, and A. Klimley. 2019. Reach Specific Use of Spawning Habitat by Adult Green Sturgeon (Acipenser medirostris) under Different Operation Schedules at Red Bluff Diversion Dam. Journal of Applied Ichthyology 35(1):22–29. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Steel_etal_2019.%20Reach%20Specific%20Use%20of%20Spawning%20Habitat%20by%20Adult%20Green%20Sturgeon%20(Acipenser%20medirostris)%20under%20Different%20Operation%20Schedules%20at%20Red%20Bluff%20Diversion%20Dam.pdf</a >

Stern, M., L. Flint, A. Flint, N. Knowles, S. Wright. 2020. The Future of Sediment Transport and Streamflow Under a Changing Climate and the Implications for Long‐Term Resilience of the San Francisco Bay‐Delta. Water Resources Research. 56. 10.1029/2019WR026245. https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2019WR026245</a >

Stevens, D. E. 1966. Distribution and Food Habits of the American Shad, Alosa Sapidissima, in the Sacramento–San Joaquin Delta. In Ecological Studies of the Sacramento–San Joaquin Delta, Part II: Fishes of the Delta, edited by J. L. Turner and D. W. Kelley, 97–107. Sacramento, CA: California Department of Fish and Game. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Stevens_1966_Distribution%20and%20Food%20Habits%20of%20the%20American%20Shad,%20Alosa%20Sapidissima,%20in%20the%20Sacramento%E2%80%93San%20Joaquin%20Delta.%20In%20Ecological%20Studies%20of%20the%20Sacramento%E2%80%93San%20Joaquin%20Delta,%20Part%20II%20Fishes%20of%20the%20Delta.pdf</a >

Stevens, D. E., and L. W. Miller. 1970. Distribution of Sturgeon Larvae in the Sacramento–San Joaquin River System. California Fish and Game 56:80–86.

Stevens, D. E., H. K. Chadwick, and R. E. Painter. 1987. American Shad and Striped Bass in California’s Sacramento–San Joaquin River system. American Fisheries Society Symposium 1:66–78. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Stevens_etal_1987.%20American%20Shad%20and%20Striped%20Bass%20in%20California%E2%80%99s%20Sacramento%E2%80%93San%20Joaquin%20River%20system.pdf</a >

Stevens, D. E., D. W. Kohlhorst, L. W. Miller, and D. W. Kelley. 1985. The Decline of Striped Bass in the Sacramento–San Joaquin Estuary, California. Transactions of the American Fisheries Society 114(1):12–30. https://cawaterlibrary.net/document/the-decline-of-striped-bass-in-the-sacramento-san-joaquin-estuary-california/</a >

Stewart, A. R., S. N. Luoma, C. E. Schlekat, M. A. Doblin, and K. A Hieb. 2004. Food Web Pathway Determines How Selenium Affects Aquatic Ecosystems: A San Francisco Bay Case Study. Environmental Science and Technology 38:4519–4526. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626651.pdf</a >

Stompe, D. K., P. B. Moyle, A. Kruger, and J. R. Durand. 2020. Comparing and Integrating Fish Surveys in the San Francisco Estuary: Why Diverse Long-Term Monitoring Programs are Important. San Francisco Estuary and Watershed Science 18(2). https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Stompe_etal_2020.%20Comparing%20and%20Integrating%20Fish%20Surveys%20in%20the%20San%20Francisco%20Estuary.pdf?csf=1&web=1&e=Jl6bar</a >

Strange, E. 2020. 2020 (January 2020 – December 2020) Technical Memorandum Regarding the Accounting of San Joaquin River Spring-Run Chinook Salmon at the Central Valley Project and State Water Project Sacramento–San Joaquin Delta Fish Collection Facilities. 15 January. California Central Valley Office, West Coast Region, National Marine Fisheries Service, Sacramento, CA. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Strange_2020_2020%20(January%202020%20%E2%80%93%20December%202020)%20Technical%20Memorandum%20Regarding%20the%20Accounting%20of%20San%20Joaquin%20River%20Spring-Run%20Chinook%20Salmon%20at%20the%20Central.pdf</a >

Strong, A. L., M. M. Mills, I. B. Huang, G. L. van Dijken, S. E. Driscoll, G. Berg, R. M. Kudela, S. G. Monismith, C. A. Francis, and K. R. Arrigo. 2021. Response of Lower Sacramento River phytoplankton to high-ammonium wastewater effluent. Elementa: Science of the Anthropocene 9(1). https://online.ucpress.edu/elementa/article/9/1/040/116040/Response-of-Lower-Sacramento-River-phytoplankton</a >

Sturrock, A. M, J. D. Wikert, T. Heyne, C. Mesick, A. E. Hubbard, T. M. Hinkelman, P. K. Weber, G. E. Whitman, J. J. Glessner, and R. C. Johnson. 2015. Reconstructing the Migratory Behavior and Long-Term Survivorship of Juvenile Chinook Salmon under Contrasting Hydrologic Regimes. PLOS ONE 10(5):e0122380. doi:10.1371/journal.pone.012238. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Sturrock_etal_2015.%20Reconstructing%20the%20Migratory%20Behavior%20and%20Long-Term%20Survivorship%20of%20Juvenile%20Chinook%20Salmon%20under%20Contrasting%20Hydrologic%20Regimes.pdf</a >

Sturrock, A. M., W. H. Satterthwaite, K. M. Cervantes-Yoshida, E. R. Huber, H. J. W. Sturrock, S. Nusslé, and S. M. Carlson. 2019. Eight Decades of Hatchery Salmon Releases in the California Central Valley: Factors Influencing Straying and Resilience. Fisheries 44(9):433–444. https://ncgasa.org/wp-content/uploads/2021/07/Sturrock2019_Fisheries.pdf</a >

Surface Water Resources, Inc. 2001. Aquatic Resources of the Lower American River: Baseline Report. Draft Report. Prepared for the Lower American River Fisheries and Instream Habitat (FISH) Working Group. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626214.pdf</a >

Swanson, C., P. S. Young, and J. J. Cech Jr. 1998. Swimming Performance of Delta Smelt: Maximum Performance and Behavioral and Kinematic Limitations of Swimming at Submaximal Velocities. Journal of Experimental Biology 201:333–345. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Swanson_etal_1998.%20Swimming%20Performance%20of%20Delta%20Smelt.pdf</a >

Swanson, C., T. Reid, P. S. Young, J. J. Cech, Jr. 2000. Comparative Environmental Tolerances of Threatened Delta Smelt (Hypomesus transpacificus) and Introduced Wakasagi (H. nipponensis) in an Altered California Estuary. Oecologia 123:384–390. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Swanson_etal_2000_Comparative%20Environmental%20Tolerances%20of%20Threatened%20Delta%20Smelt%20(Hypomesus%20transpacificus)%20and%20Introduced%20Wakasagi%20(H.%20nipponensis)%20in%20an%20Altered%20California%20Estuary.pdf</a >

Sweetnam, D. A. 1999. Status of Delta Smelt in the Sacramento–San Joaquin Estuary. California Fish and Game 85(1):22–27. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Sweetnam_1999.%20Status%20of%20Delta%20Smelt%20in%20the%20Sacramento%E2%80%93San%20Joaquin%20Estuary.pdf</a >

Takata, L., T. R. Sommer, J. Louise Conrad, and B. M. Schreier. 2017. Rearing and Migration of Juvenile Chinook Salmon (Oncorhynchus tshawytscha) in a Large River Floodplain. DOI 10.1007/s10641-017-0631-0. July 14. California Department of Water Resources, West Sacramento, CA. https://link.springer.com/article/10.1007/s10641-017-0631-0</a >

Tehama-Colusa Canal Authority. 2008. Fishery Resources, Appendix B. In Fish Passage Improvement Project at the Red Bluff Diversion Dam EIS/EIR. Prepared by CH2M HILL, State Clearinghouse No. 2002-042-075. Willows, CA: Tehama-Colusa Canal Authority.

The Bay Institute, Center for Biological Diversity, and the Natural Resources Defense Council. 2007. Petition to the State of California Fish and Game Commission and Supporting Information for Listing the Delta Smelt (Hypomesus transpacificus) as an Endangered Species under the California Endangered Species Act. February 7. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/TBI_etal_2007_Petition%20to%20the%20State%20of%20California%20Fish%20and%20Game%20Commission%20and%20Supporting%20Information%20for%20Listing%20the%20Delta%20Smelt%20(Hypomesus%20transpacificus.pdf</a >

Thomas, J. L. 1967. The Diet of Juvenile and Adult Striped Bass, Roccus saxatilis, in the Sacramento–San Joaquin River System. California Fish and Game 53(1):49–62. https://www.baydeltalive.com/assets/06942155460a79991fdf1b57f641b1b4/application/pdf/135761.pdf</a >

Thomas, M. J., M. L. Peterson, E. D. Chapman, N. A. Fangue, and A. P. Klimley. 2019. Individual Habitat Use and Behavior of Acoustically-Tagged Juvenile Green Sturgeon in the Sacramento–San Joaquin Delta. Environmental Biology of Fishes 102:1025–1037. https://link.springer.com/article/10.1007/s10641-019-00888-1</a >

Thompson, L. C., N. A. Fangue, J. J. Cech, Jr., D. E. Cocherell, and R. C. Kaufman. 2012. Juvenile and Adult Hardhead Thermal Tolerances and Preferences: Temperature Preference, Critical Thermal Limits, Active and Resting Metabolism, and Blood-Oxygen Equilibria. Center for Aquatic Biology and Aquaculture Technical Report, University of California, Davis. Davis, CA.

Thomson, J. R., W. J. Kimmerer, L. R. Brown, K. B. Newman, R. Mac Nally, W. A. Bennett, F. Feyrer, and E. Fleishman. 2010. Bayesian Change Point Analysis of Abundance Trends for Pelagic Fishes in the Upper San Francisco Estuary. Ecological Applications 20(5):1431–1448. https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1890/09-0998.1</a >

Tobias, V. 2021. Simulated Fishing to Untangle Catchability and Availability in Fish Abundance Monitoring. Preprints 2020, 2020020177. Available: https://doi.org/10.20944/preprints202002.0177.v2</a >. Accessed: January 22, 2021.

Tucker, M. E., C. M. Williams, and R. R. Johnson. 1998. Abundance, Food Habits, and Life History Aspects of Sacramento Squawfish and Striped Bass at the Red Bluff Diversion Complex, Including the Research Pumping Plant, Sacramento River, California, 1994-1996: Annual Report. U.S. Fish and Wildlife Service, Red Bluff, CA. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Tucker_etal_1998.%20Abundance,%20Food%20Habits,%20and%20Life%20History%20Aspects%20of%20Sacramento%20Squawfish%20and%20Striped%20Bass%20at%20the%20Red%20Bluff%20Diversion%20Complex,%20Including%20the%20Research%20Pumping%20Plant,%20Sacramento%20River,%20California,%201994-1996.pdf</a >

Turner, J. L. 1966. Distribution of Threadfin Shad, Dorosoma petenense; Tule Perch, Hysterocarpus traski; Sculpin Spp. and Crayfish Spp. in the Sacramento–San Joaquin Delta. In Fish Bulletin 136: Ecological Studies of the Sacramento–San Joaquin Estuary: Part II—Fishes of the Delta, edited by J. L. Turner and D. W. Kelley, 160–168. Sacramento, CA: California Department of Fish and Game. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11A_AquaticSpeciesLifeHistories/Turner_1966_Distribution%20of%20Threadfin%20Shad,%20Dorosoma%20petenense;%20Tule%20Perch,%20Hysterocarpus%20traski%20Sculpin%20Spp.%20and%20Crayfish%20Spp.%20in%20the%20Sacramento%E2%80%93San%20Joaquin%20Delta.pdf</a >

University of California, Agriculture and Natural Resources. 2019a. California Fish Website. Smallmouth Bass. Available: http://calfish.ucdavis.edu/species/?uid=150&ds=698</a >.

University of California, Agriculture and Natural Resources. 2019b. California Fish Website. Spotted Bass. Available: http://calfish.ucdavis.edu/species/?uid=157&ds=698</a >.

U.S. Fish and Wildlife Service. 1967. Biology and Management of the American Shad and Status of the Fisheries, Atlantic Coast of the U.S.

U.S. Fish and Wildlife Service. 1995. Working Paper: Habitat Restoration Actions to Double Natural Production of Anadromous Fish in the Central Valley of California. Volume 2. May 9, 1995. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1107%20USFWS_1995_AFRPWorkingPaper_v1.pdf</a >

U.S. Fish and Wildlife Service. 2001. Abundance and Survival of Juvenile Chinook Salmon in the Sacramento–San Joaquin Estuary: 1997 and 1998. Annual Progress Report Sacramento–San Joaquin Estuary. https://calisphere.org/item/ark:/86086/n2hd7tnv/</a >

U.S. Fish and Wildlife Service. 2002. Stanislaus River Anadromous Fish Surveys 2000-2001. Snorkel Survey. Anadromous Fish Restoration Program. https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&ved=2ahUKEwiy39XFxbeBAxV5NEQIHUhZC4IQFnoECBsQAQ&url=https%3A%2F%2Fnrm.dfg.ca.gov%2FFileHandler.ashx%3FDocumentID%3D32807&usg=AOvVaw08E-uPN0fwF8h8cqCuUDqX&opi=89978449</a >

U.S. Fish and Wildlife Service. 2008. Biological Opinion on the Effects of Long Term Coordinated Operations of the Central Valley (CVP) and State Water Project (SWP) on Delta Smelt and Its Designated Critical Habitat. December.

U.S. Fish and Wildlife Service. 2010. Endangered and Threatened Wildlife and Plants; 12-Month Finding on a Petition to Reclassify the Delta Smelt from Threatened to Endangered Throughout Its Range. Federal Register 75:17667–17680. https://www.gpo.gov/fdsys/pkg/FR-2010-04-07/pdf/2010-7904.pdf</a >.

U.S. Fish and Wildlife Service. 2012. Endangered and Threatened Wildlife and Plants; 12-Month Finding on a Petition to List the San Francisco Bay-Delta Population of the Longfin Smelt as Endangered or Threatened. Federal Register 77:17756–17797. https://www.federalregister.gov/documents/2012/04/02/2012-7198/endangered-and-threatened-wildlife-and-plants-12-month-finding-on-a-petition-to-list-the-san</a >

U.S. Fish and Wildlife Service. 2019. Biological Opinion for the Reinitiation of Consultation on the Long Term Operation of the Central Valley Project and State Water Project. USFWS Pacific Southwest Region. Sacramento, CA. https://repository.library.noaa.gov/view/noaa/22046</a >

U.S. Fish and Wildlife Service. 2020. 700 Winter-Run Chinook Salmon Return to Battle Creek. October 22.

Van Eenennaam, J. P., M. A. H. Webb, X. Deng, S. I. Doroshov, R. B. Mayfield, J. J. Cech Jr, D. C. Hillemeier, and T. E. Willson. 2001. Artificial Spawning and Larval Rearing of Klamath River Green Sturgeon. Transactions of the American Fisheries Society 130(1):159–165. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626131.pdf</a >

Van Eenennaam, J. P., J. Linares-Casenave, X. Deng, and S. I. Doroshov. 2005. Effect of Incubation Temperature on Green Sturgeon Embryos, Acipenser medirostris. Environmental Biology of Fishes 72:145–154. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1102%20Van%20Eenennaam%20et%20al.%202005.pdf</a >

Vladykov, V. D., and W. I. Follett. 1958. Redescription of Lampetra ayersii (Gunther) of Western North America, a Species of Lamprey (Petromyzontidae) Distinct from Lampetra fluviatilis (Linnaeus) of Europe. Journal of the Fisheries Research Board of Canada 15(1):47–77.

Vogel, D. A. 2008. Evaluation of Adult Sturgeon Migration at the Glenn-Colusa Irrigation District Gradient Facility on the Sacramento River. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626423.pdf</a >

Vogel, D. 2011. Insights into the Problems, Progress, and Potential Solutions for Sacramento River Basin Native Anadromous Fish Restoration. Prepared for Northern California Water Association and Sacramento Valley Water Users. April. Natural Resource Scientists, Inc., Red Bluff, CA. https://www.norcalwater.org/wp-content/uploads/2011/07/vogel-final-report-apr2011.pdf</a >

Vogel, D. A., and K. R. Marine. 1991. Guide to Upper Sacramento Chinook Salmon Life History. Report to U.S. Bureau of Reclamation, Central Valley Project. CH2M Hill, Inc., Redding, CA. 55 pp.

Wagner, R. W., M. Stacey, L. R. Brown, and M. Dettinger. 2011. Statistical Models of Temperature in the Sacramento–San Joaquin Delta under Climate-Change Scenarios and Ecological Implications. Estuaries and Coasts 34(3):544–556. https://link.springer.com/article/10.1007/s12237-010-9369-z</a >

Wang, J. C. S. 2010. Fishes of the Sacramento–San Joaquin Estuary and Adjacent Waters, California: A Guide to the Early Life Histories. Digital copy made by Interagency Ecological Study Program for the Sacramento–San Joaquin Estuary, Technical Report 9. December 2010. Stockton, CA. https://www.usbr.gov/mp/TFFIP/docs/tracy-reports/other-ttr-2010-no9-fishes-sac-sj-estuary.pdf</a >

Water Forum. 2005. Lower American River, State of the River Report. April. Available: http://www.waterforum.org/wp-content/uploads/2015/09/State-of-the-River-2005.pdf</a >. Accessed: November 3, 2020.

Watry, C. B., A. Gray, R. Cuthbert, B. Pyper, and K. Arendt. 2007. Out-Migrant Abundance Estimates and Coded Wire Tagging Pilot Study for Juvenile Chinook Salmon at Caswell Memorial State Park in the Lower Stanislaus River, California. 2007 Annual Data Report. Prepared by Cramer Fish Sciences for U.S. Fish and Wildlife Service Anadromous Fish Restoration Program. Grant No. 813326G008. 45 pp.

Watry, C. B., A. Gray, K. Jones, K. Sellheim, and J. Merz. 2012. Juvenile Salmonid Out-Migration Monitoring at Caswell Memorial State Park in the Lower Stanislaus River, California. 2010–2011 Biannual Report. Prepared by Cramer Fish Sciences for U.S. Fish and Wildlife Service’s Comprehensive Assessment and Monitoring Program. Grant No. 813326G008. 48 pp.

White, J. 2019. Fall Midwater Trawl 2018 Annual Fish Abundance Summary. Memorandum to Gregg Erickson, Regional Manager, California Department of Fish and Wildlife, Bay Delta Region. 2 January. https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&ved=2ahUKEwiSzLb1wLeBAxWUIUQIHQNhCwgQFnoECBcQAQ&url=https%3A%2F%2Fnrm.dfg.ca.gov%2FFileHandler.ashx%3FDocumentId%3D164097&usg=AOvVaw1V86tpiNYDCg3o1LXg6kDv&opi=89978449</a >

Williams, J. G., 2001. Chinook Salmon in the Lower American River, California’s Largest Urban Stream. In Fish Bulletin 179(2): Contributions to the Biology of the Central Valley Salmonids, edited by R. L. Brown, 1–38. Sacramento, CA: California Department of Fish and Game. http://www.sjrdotmdl.org/concept_model/phys-chem_model/documents/300001450.pdf</a >

Williams, J. G. 2006. Central Valley Salmon: A Perspective on Chinook and Steelhead in the Central Valley of California. San Francisco Estuary and Watershed Science 4(3). Available: https://escholarship.org/uc/item/21v9x1t7</a >. Accessed: November 3, 2020.

Williams, J. G. 2010. Life History Conceptual Model for Chinook Salmon and Steelhead. DRERIP Delta Conceptual Model. Sacramento, CA: Delta Regional Ecosystem Restoration Implementation Plan. https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&ved=2ahUKEwii-8eHwLeBAxURJkQIHSa5CNIQFnoECBUQAQ&url=https%3A%2F%2Fnrm.dfg.ca.gov%2FFileHandler.ashx%3FDocumentID%3D28422&usg=AOvVaw3uYG40st_w2JTNeg1GrkGE&opi=89978449</a >

Williams, T. H., J. C. Garza, N. Hetrick, S. T. Lindley, M. S. Mohr, J. M. Myers, M. R. O’Farrell, R. M. Quiñones, and D. J. Teel. 2011. Upper Klamath and Trinity River Chinook Salmon Biological Review Team Report. National Marine Fisheries Service, Southwest Region. https://repository.library.noaa.gov/view/noaa/4366</a >

Williams, T. H., B. C. Spence, D. A. Boughton, R. C. Johnson, L. Crozier, N. Mantua, M. O’Farrell, and S. T. Lindley. 2016. Viability Assessment for Pacific Salmon and Steelhead Listed under the Endangered Species Act: Southwest. 2 February 2016 Report to National Marine Fisheries Service, West Coast Region from Southwest Fisheries Science Center. https://swfsc-publications.fisheries.noaa.gov/publications/TM/SWFSC/NOAA-TM-NMFS-SWFSC-564.pdf</a >

Winder, M., and A. D. Jassby. 2011. Shifts in Zooplankton Community Structure: Implications for Food Web Processes in the Upper San Francisco Estuary. Estuaries and Coasts 34(4):675–690. https://link.springer.com/article/10.1007/s12237-010-9342-x</a >

Wulff, M. L., J. T. May, and L. R. Brown. 2012. Upper Clear Creek Watershed Aquatic Chemistry and Biota Surveys, 2004–5, Whiskeytown National Recreation Area, Shasta County, California: U.S. Geological Survey Open-File Report 2012–1173. 8 pp. https://pubs.usgs.gov/of/2012/1173/</a >

Yoshiyama, R. M., E. R. Gerstung, F. W. Fisher, and P. B. Moyle. 1996. Historical and Present Distribution of Chinook Salmon in the Central Valley Drainage of California. In Sierra Nevada Ecosystem Project: Final Report to Congress, Vol. III, Assessments, Commissioned Reports, and Background Information. Davis, CA: University of California, Davis, Centers for Water and Wildland Resources. https://sitesreservoirproject.riptideweb.com/references/REF21/_Ch11_AquaticBiologicalResources/YoshiyamaEtAl_1996_hist-present-dist-CHN-CV-drainage.PDF?csf=1&web=1&e=f95huP</a >

Yoshiyama, R. M., F. W. Fisher, P. B. Moyle. 1998. Historical Abundance and Decline of Chinook Salmon in the Central Valley Region of California. North American Journal of Fisheries Management 18:487–521. https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&ved=2ahUKEwjbkefrvreBAxUwI0QIHXfvAaQQFnoECBAQAQ&url=https%3A%2F%2Fnrm.dfg.ca.gov%2FFileHandler.ashx%3FDocumentID%3D3563&usg=AOvVaw2ymOVkyG-Rl_-ctTks5zjF&opi=89978449</a >

Yoshiyama, R. M., E. R. Gerstung, F. W. Fisher, and P. B. Moyle. 2001. Historical and Present Distribution of Chinook Salmon in the Central Valley Drainage of California. In Fish Bulletin 179(1): Contributions to the Biology of Central Valley Salmonids, edited by R. L. Brown, 71–176. Sacramento, CA: California Department of Fish and Game. https://sitesreservoirproject.riptideweb.com/references/REF21/_Ch11_AquaticBiologicalResources/YoshiyamaEtAl2001_histandpresent-dist-CHN_CV-drainage-CA.pdf</a >

Zeug, S. C., K. Sellheim, C. Watry, J. D. Wikert, and J. Merz. 2014. Response of Juvenile Chinook Salmon to Managed Flow: Lessons Learned from a Population at the Southern Extent of their Range in North America. Fisheries Management and Ecology 21(2):155–168. https://sitesreservoirproject.riptideweb.com/references/REF21/_Ch11_AquaticBiologicalResources/Zeug%20and%20Cavallo_2013_Influence%20of%20estuary%20conditions%20on%20the%20recovery%20rate%20of%20coded-wire-tagged%20Chinook%20salmon%20in%20an%20ocean%20fishery_Ecol_FW_Fish.pdf</a >

Zimmerman, C. E., G. W. Edwards, and K. Perry. 2009. Maternal Origin and Migratory History of Steelhead and Rainbow Trout Captured in Rivers of the Central Valley, California. Transactions of the American Fisheries Society 138(2):280–291.

Appendix 11A1

Columbia Basin Research, University of Washington. 2020. SacPAS CDFW GrandTab Adult Escapement. Available: http://www.cbr.washington.edu/sacramento/data/query_adult_grandtab.html</a >. Accessed: May 13, 2020.

Appendix 11B

Adams, B.L., Zaugg, W.S., and McLain, L.R. 1975. Inhibition of salt water survival and Na-K-ATPase elevation in steelhead trout (Salmo gairdneri) by moderate water temperatures. Transactions of the American Fisheries Society 104(4):766–769. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11B_FisheriesImpactAssessmentMethods/Adams_etal_1975.%20Inhibition%20of%20salt%20water%20survival%20and%20Na-K-ATPase%20elevation%20in%20steelhead%20trout%20(Salmo%20gairdneri)%20by%20moderate%20water%20temperatures.pdf</a >

Alderdice, D. F., and F. P. J. Velsen. 1978. Relation between temperature and incubation time for eggs of chinook salmon (Oncorhynchus tshawytscha). Journal of the Fisheries Research Board of Canada 35:60–75.

Anderson, J. J. 2018. Using river temperature to optimize fish incubation metabolism and survival: a case for mechanistic models. bioRxiv:257154. Available: http://dx.doi.org/10.1101/257154</a >. Accessed: July 3, 2019.

Beakes, M. P., S. Sharron, R. Charish, J. W. Moore, W. H. Satterthwaite, E. Strum, B. K. Wells, S. M. Sogard, and M. Mangel. 2014. Using Scale Characteristics and Water Temperature to Reconstruct Growth Rates of Juvenile Steelhead Oncorhynchus mykiss. Journal of Fish Biology 84:58–72. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11B_Upstr_Fisheries_Impact_Meth/Beakes%20et%20al_2014_Reconstruct%20Growth%20Rates.pdf</a >

Bell, C. E., and B. Kynard. 1985. Mortality of adult American shad passing through a 17-megawatt kaplan turbine at a low-head hydroelectric dam. North American Journal of Fisheries Management 5:33–38. https://www.osti.gov/servlets/purl/1439158</a >

Bureau of Reclamation. 2019. Reinitiation of Consultation on the Coordinated Long-Term Operation of the Central Valley Project and State Water Project. Final Biological Assessment. Mid-Pacific Region. Chapter 4, Proposed Action. October 2019. https://www.usbr.gov/mp/bdo/docs/ba-final-biological-assessment.pdf</a >

Cech, J.J., Mitchell, S.J., Castleberry, D.T. et al. 1990. Distribution of California stream fishes: influence of environmental temperature and hypoxia. Environ Biol Fish 29:95–105.

Erickson, D. L., J. A. North, J. E. Hightower, J. Weber, and L. Lauck. 2002. Movement and habitat use of green sturgeon Acipenser medirostris in the Rogue River, Oregon, USA. Journal of Applied Ichthyology 18:565–569. https://onlinelibrary.wiley.com/doi/abs/10.1046/j.1439-0426.2002.00403.x</a >

Fay, C. W., R. J. Neves, and G. B. Pardue. 1983. Species profiles: Life histories and environmental requirements of coastal fishes and invertebrates (Mid-Atlantic): Striped bass. U. S. Fish and Wildlife Service, Division of Biological Services Report No. FWS/OBS-82/11.8, and U. S. Army Corps of Engineers Report No. TR EL-82-4, Washington, D.C. https://apps.dtic.mil/sti/tr/pdf/ADA180384.pdf</a >

Grabowski, S. J. 1973. Effects of fluctuating and constant temperatures on some hematological characteristics, tissue glycogen levels, and growth of steelhead trout (Salmo gairdneri). Ph.D. dissertation. University of Idaho. 77 pp. https://researchrepository.wvu.edu/cgi/viewcontent.cgi?article=1449&context=etd</a >

Hoar, W.S. 1988. The physiology of smolting salmonids. Pages 275–326 in W.S. Hoar and J.R. Randall, editors. Fish Physiology, Volume XIB, Academic Press, New York.

Hokanson, K. E. F., C. F. Kleiner, and T. W. Thorsland. 1977. Effects on constant temperatures and diel temperature fluctuations on specific growth and mortality rates and yield of juvenile rainbow trout, Salmo gairdneri. Journal of the Fisheries Research Board of Canada 34:639–648.

Houston, J. J. 1988. Status of green sturgeon, Acipenser medirostris, in Canada. Canadian Field-Naturalist 102:286–290. https://www.biologicaldiversity.org/species/fish/North_American_green_sturgeon/pdfs/nmfs-status-review.pdf</a >

Israel, J., A. Drauch, M. Gingras. 2009. Life history conceptual model for white sturgeon (Acipenser transmontanus). Available at: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=28423</a >. Accessed January 23, 2023.

Leggett, W. and R. Whitney. 1972. Water temperature and the migrations of American shad. Fish Bulletin 70. https://www.researchgate.net/profile/William-Leggett-2/publication/255663781_Water_temperature_and_the_migration_of_American_shad/links/56e1958708ae23524090b3a9/Water-temperature-and-the-migration-of-American-shad.pdf</a >

Martin, B. T., A. Pike, S. N. John, N. Hamda, J. Roberts, S. T. Lindley, and E. M. Danner. 2017. Phenomenological vs. biophysical models of thermal stress in aquatic eggs. Ecology Letters 20(1):50–59. https://onlinelibrary.wiley.com/doi/full/10.1111/ele.12705</a >

Mayfield, R. and J. Cech, Jr. 2004. Temperature Effects on Green Sturgeon Bioenergetics. Transactions of The American Fisheries Society 133:961–970. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626519.pdf</a >

McCullough D. A., S. Spalding, D. Sturdevant, M. Hicks. 2001. EPA Issue Paper 5: Summary of Technical Literature Examining the Physiological Effects of Temperature on Salmonids. EPA-910-D-01-005. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11B_FisheriesImpactAssessmentMethods/McCullough_etal_2001.%20EPA%20Issue%20Paper%205%20Summary%20of%20Technical%20Literature%20Examining%20the%20Physiological%20Effects%20of%20Temperature%20on%20Salmonids.pdf</a >

Meeuwig, M., J. Bayer, J. Seele, and R. Reiche. 2002. Identification of Larval Pacific Lampreys (Lampetra tridentata), River Lampreys (L. ayresi) and Western Brook Lampreys (L. richardsoni) and Thermal Requirements of Early Life History Stages of Lampreys: Annual Report 2002. 10.2172/821798. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11B_FisheriesImpactAssessmentMethods/Meeuwig_Michael_2002_Identification%20of%20Larval%20Pacific%20Lampreys%20(Lampetra%20Tridentata),%20River%20Lampreys%20(L.%20Ayresi)%20and%20Western%20Brook%20Lampreys%20(L.%20Richardson)%20and%20Thermal%20Requirements%20of%20Early%20Life%20History%20Stages%20of%20Lampreys.pdf</a >

Meeuwig, M., J. Bayer, and J. Seelye. 2005. Effects of Temperature on Survival and Development of Early Life Stage Pacific and Western Brook Lampreys. Transactions of The American Fisheries Society. 134. 19-27. 10.1577/FT03-206.1. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11B_FisheriesImpactAssessmentMethods/Meeuwig_etal_(2005).%20Effects%20of%20Temperature%20on%20Survival%20and%20Development%20of%20Early%20Life%20Stage%20Pacific%20and%20Western%20Brook%20Lampreys.pdf</a >

Moyle, P. B. 2002. Inland Fishes of California, Revised and Expanded. Berkeley: University of California Press.

Moyle, P. B., R. D. Baxter, T. Sommer, T. C. Foin, and S. A. Matern. 2004. Biology and Population Dynamics of Sacramento Splittail (Pogonichthys macrolepidotus) in the San Francisco Estuary: A Review. San Francisco Estuary and Watershed Science 2(2). https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11B_FisheriesImpactAssessmentMethods/Moyle_et_al_2004_Biology%20and%20Population%20Dynamics%20of%20Sacramento%20Splittail%20(Pogonichthys%20macrolepidotus)%20in%20the%20San%20Francis.pdf</a >

Myrick, C.A and J.J. Cech, Jr. 2004. Temperature effects on juvenile anadromous salmonids in California’s central valley: what don’t we know? Review in Fish Biology and Fisheries 14:113–123. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/Myrick%20and%20Cech%20%282004%29.pdf</a >

National Marine Fisheries Service. 2009. Biological and Conference Opinion on the Long-Term Operations of the Central Valley Project and State Water Project. June 4. Southwest Region. https://www.fisheries.noaa.gov/resource/document/biological-opinion-and-conference-opinion-long-term-operations-central-valley</a >

National Marine Fisheries Service. 2016. Central Valley Recovery Domain 5-Year Review: Summary and Evaluation of California Central Valley Steelhead Distinct Population Segment. National Marine Fisheries Service, West Coast Region. https://www.fisheries.noaa.gov/resource/document/5-year-review-summary-and-evaluation-california-central-valley-steelhead-distinct</a >

National Marine Fisheries Service. 2019. Biological Opinion on Long-term Operation of the Central Valley Project and the State Water Project. National Marine Fisheries Service, West Coast Region. https://www.fisheries.noaa.gov/resource/document/biological-opinion-reinitiation-consultation-long-term-operation-central-valley</a >

Painter, R. L., L. Wixom, and L. Meinz. 1980. American Shad Management Plan for the Sacramento River Drainage. Anadromous Fish Conservation Act Project AFS-17, Job 5. Sacramento, CA: California Department of Fish and Game.

Rich, A.A. 1987. Water temperatures which optimize growth and survival of the anadromous fishery resources of the lower American River. A.A. Rich and Associates. San Rafael, CA.

Richter A. and S. A. Kolmes. 2005. Maximum Temperature Limits for Chinook, Coho, and Chum Salmon, and Steelhead Trout in the Pacific Northwest. Reviews in Fisheries Science 13(1):23–49. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626288.pdf</a >

Sites Project Authority and Bureau of Reclamation. 2017. Draft Environmental Impact Report/Draft Environmental Impact Statement. Appendix 12D, Water Temperature Index Value Selection Rationale. State Clearinghouse #2001112009. Available: https://sitesproject.org/environmental-review/draft-environmental-impact-report-environmental-impact-statement/</a >

Southern California Edison Company. 2007. Attachment H, Life History and Habitat Requirements of Fish Species in the Project Area. February. Rosemead, CA. Available: https://www.sce.com/sites/default/files/inline-files/apdea_attachmenth.pdf</a >

Sullivan K., D.J. Martin, R.D. Cardwell, J.E. Toll, and S. Duke. 2000. An analysis of the effects of temperature on salmonids of the Pacific Northwest with implications for selecting temperature criteria. Sustainable Ecosystems Institute. Portland, OR. 147 pp. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11B_FisheriesImpactAssessmentMethods/Sullivan_etal_2000.%20An%20analysis%20of%20the%20effects%20of%20temperature%20on%20salmonids%20of%20the%20Pacific%20Northwest%20with%20implications%20for%20selecting%20temperature%20criteria..pdf</a >

U.S. Bureau of Reclamation (Reclamation). 2019. Reinitiation of Consultation on the Coordinated Long-Term Operation of the Central Valley Project and State Water Project. Final Biological Assessment. Mid-Pacific Region. January 2019. Available: https://www.usbr.gov/mp/bdo/docs/ba-final-biological-assessment.pdf</a >

U.S. Environmental Protection Agency. 2003. EPA Region 10 Guidance for Pacific Northwest State and Tribal Temperature Water Quality Standards. EPA 910-B-03-002. Region 10 Office of Water, Seattle, WA. 49 pp. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11B_FisheriesImpactAssessmentMethods/USEPA_2003.%20EPA%20Region%2010%20Guidance%20for%20Pacific%20Northwest.%20State%20and%20Tribal%20Temperature%20Water%20Quality%20Standards..pdf</a >

Van Eenennaam, J.P., Linares-Casenave, J., Deng, X., and Doroshov, S.I. 2005. Effect of incubation temperature on green sturgeon embryos, Acipenser medirostris. Environmental Biology of Fishes 72(2):145–154. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11B_FisheriesImpactAssessmentMethods/Van%20Eenennaam_etal_2005_Effect%20of%20Incubation%20Temperature%20on%20Green%20Sturgeon%20Embryos,%20Acipenser%20medirostris.pdf</a >

Wang, J. C. 1986. Fishes of the Sacramento-San Joaquin estuary and adjacent waters, California: A guide to the early life histories (Vol. 9). U.S. Department of Interior, Bureau of Reclamation.

Wurtsbaugh, W.A. and G.E. Davis. 1977. Effects of temperature and ration level on the growth and food conversion efficiency of rainbow trout, Salmo gairdneri, Richardson. Journal of Fish Biology 11:99–104.

Zaugg, W. S. 1981. Advanced photoperiod and water temperature effects on gill Na+-K+ adenosine triphosphatase activity and migration of juvenile steelhead (Salmo gairdneri). Can. 5. Fisheries and Aquatic Science 38:758–764.

Zaugg, W.S. and H.H. Wagner. 1973. Gill ATPase activity related to parr-smolt transformation and migration in steelhead trout (Salmo gairdneri): Influence of photo-period and temperature. Comparative Biochemistry and Physiology Part B: Comparative Biochemistry 45:955–965.

Zeug, S., P. Bergman, B. Cavallo, and K. Jones. 2012. Application of a Life Cycle Simulation Model to Evaluate Impacts of Water Management and Conservation Actions on an Endangered Population of Chinook Salmon. Environmental Modeling and Assessment 17(5):455–467. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11B_FisheriesImpactAssessmentMethods/Zeug_et_al_IOS%20%7B2012).pdf</a >

Personal Communications

Swank, David, National Marine Fisheries Service. July 24, 2015—Email regarding a significant temperature increment for steelhead eggs and juveniles at which mortality increases quickly. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11B_Upstr_Fisheries_Impact_Meth/Swank_2015_Pers%20Comm_July%2024%202015%20Email%20Re%20Significant%20Temperature%20Increment.pdf

Appendix 11C

There are not in-text citations or references for this chapter.

Appendix 11D

There are not in-text citations or references for this chapter.

Appendix 11E

Forbes, A. M. 1981. Review of Smallmouth Bass (Micropterus dolomieui) Spawning Requirements and First Year Survival in Lakes. Wis. Dep, Nat. Resour. Res. Rep. No. 133. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11E_ReservoirWaterSurfaceElevationSummaryTable/Forbes_1981.%20Review%20of%20Smallmouth%20Bass%20(Micropterus%20dolomieui)%20Spawning%20Requirements%20and%20First%20Year%20Survival%20in%20Lakes.pdf</a >

Friesen, T. G. 1998. Effects of Food Abundance and Temperature on Growth, Survival, Development and Abundance of Larval and Juvenile Smallmouth Bass. University of Guelph, Ontario. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11E_ReservoirWaterSurfaceElevationSummaryTable/Friesen_1998.%20Effects%20of%20Food%20Abundance%20and%20Temperature%20on%20Growth,%20Survival,%20Development%20and%20Abundance%20of%20Larval%20and%20Juvenile%20Smallmouth%20Bass.pdf</a >

Graham, R., and D. Orth. 1986. Effects of Temperature and Streamflow on Time and Duration of Spawning by Smallmouth Bass. Transactions of the American Fisheries Society 115:693–702. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11E_ReservoirWaterSurfaceElevationSummaryTable/Grahamn%20and%20Orth%20.1986.%20Temperature%20Streamflowon%20Spawning%20Smallmouth%20Bass.pdf</a >

Hunt, J., and C. A. Annett. 2002. Effects of Habitat Manipulation on Reproductive Success of Individual Largemouth Bass in an Ozark Reservoir. North American Journal of Fisheries Management 55:1201–1208.

Knotek, W. L., and D. J. Orth. 1998. Survival for Specific Life Intervals of Smallmouth Bass, Micropterus dolomieu, during Parental Care. Environmental Biology of Fishes 51:285–296.

Latta, W. C. 1963. The Life History of the Smallmouth Bass, Micropterus d. dolomieui, at Waugoshance Point, Lake Michigan. Ann Arbor, MI: Institute for Fisheries Research (Michigan Department of Conservation) and the University of Michigan. https://babel.hathitrust.org/cgi/pt?id=mdp.39015071239415&seq=1</a >

Lee, D. P. 1999. Water Level Fluctuation Criteria for Black Bass in California Reservoirs. Reservoir Research and Management Project: Information Leaflet No. 12.

Moyle, P. B. 2002. Inland Fishes of California. 2nd Edition. Berkeley, CA: University of California Press.

Philipp, D. P., C. A. Toline, M. F. Kubacki, D. B. F. Philipp, and F. J. S. Phelan. 1997. The Impact of Catch-and-Release Angling on the Reproductive Success of Smallmouth Bass and Largemouth Bass. North American Journal of Fisheries Management 17:557–567.

Steinhart, G. B. 2004. Exploring Factors Affecting Smallmouth Bass Nest Success and Reproductive Behavior. Dissertation. Presented in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy in the Graduate School of The Ohio State University.

Appendix 11F

Bürkner, P.-C. 2017. brms: An R Package for Bayesian Multilevel Models Using Stan. Journal of Statistical Software 80(1):1–28. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11F_Smelt_Analysis/B%C3%BCrkner_2017_%20R%20Package%20for%20Bayesian%20Multilevel%20Models.pdf</a >

Burnham, K. P., D. R. Anderson, and K. P. Huyvaert. 2011. AIC Model Selection and Multimodel Inference in Behavioral Ecology: Some Background, Observations, and Comparisons. Behavioral Ecology and Sociobiology 65(1):23–35. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11F_SmeltAnalysis/Burnham_etal_2011.%20AIC%20Model%20Selection%20and%20Multimodel%20Inference%20in%20Behavioral%20Ecology%20Some%20Background,%20Observations,%20and%20Comparisons.pdf</a >

California Department of Fish and Game. 2009. California Endangered Species Act Incidental Take Permit No. 2081-2009-001-03. Department of Water Resources California State Water Project Delta Facilities and Operations. Yountville, CA: California Department of Fish and Game, Bay Delta Region. Available: https://www.waterboards.ca.gov/waterrights//water_issues/programs/bay_delta/docs/cmnt081712/dfg/cdfg2009.pdf</a >

California Department of Fish and Wildlife. 2018. Zooplankton Study Clarke-Bumpus Net Data, 1972-2017 (file <1972-2017CBMatrix.xlsx>). https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11F_Smelt_Analysis/CDFW_2018_Zooplankton%20Study%20Clarke-Bumpus%20Net%20Data.pdf</a >

California Department of Water Resources. 2019. Incidental Take Permit Application for Long-Term Operation of the California State Water Project. December 13. Available: https://water.ca.gov/-/media/DWR-Website/Web-Pages/Programs/State-Water-Project/Files/1_DWR_LTO_ITP_Application_2019-12-13_a_y19.pdf</a >.

California Department of Water Resources. 2020. Final Environmental Impact Report for Long-term Operation of the California State Water Project. State Clearinghouse No. 2019049121. March. Available: https://water.ca.gov/-/media/DWR-Website/Web-Pages/Programs/State-Water-Project/Files/Deliv-42DEIRv1-120519-Volume-I508.pdf</a >

Greenwood, M. 2018. Potential Effects on Zooplankton from California WaterFix Operations. Technical Memorandum to California Department of Water Resources. July 2. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2_rebuttal/dwr_1349.pdf</a >.

Greenwood, M., and C. Phillis. 2018. Comparison of Predicted Longfin Smelt Fall Midwater Trawl Index for Existing Conditions, No Action Alternative, and California WaterFix CWF H3+ Operational Scenarios Using the Nobriga and Rosenfield (2016) Population Dynamics Model. Technical Memorandum to California Department of Water Resources. Sacramento, CA: ICF. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2_rebuttal/dwr_1352.pdf</a >.

Huang, J. V., and B. Greimann. 2011. Sediment Loads at Tehama-Colusa, Glen-Colusa, and Delevan Diversions. Technical Report No. SRH-2011-22. Mid Pacific Region NODOS Investigation Report. June. Denver, CO: Bureau of Reclamation, Technical Service Center, Sedimentation and River Hydraulics Group. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11F_Smelt_Analysis/Huang%20and%20Greimann_2011_Technical%20Report%20No%20SRH-2011-22.pdf</a >

Jassby, A. D., W. J. Kimmerer, S. G. Monismith, C. Armor, J. E. Cloern, T. M. Powell, J. R. Schubel, and T. J. Vendlinski. 1995. Isohaline Position as a Habitat Indicator for Estuarine Populations. Ecological Applications 5(1):272–289. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/dwr/dwr_exh10.pdf</a >

Kimmerer, W. J. 2002. Effects of Freshwater Flow on Abundance of Estuarine Organisms: Physical Effects or Trophic Linkages? Marine Ecology Progress Series 243:39–55. Available: https://www.int-res.com/articles/meps2002/243/m243p039.pdf</a >

Kimmerer, W. J., E. S. Gross, and M. L. MacWilliams. 2009. Is the Response of Estuarine Nekton to Freshwater Flow in the San Francisco Estuary Explained by Variation in Habitat Volume? Estuaries and Coasts 32(2):375–389. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1091%20Kimmerer%20et%20al%202009_EstuariesCoasts_HabitatAbundance.pdf</a >

Kratville, D. 2010. California Department of Fish and Game Rationale for Effects of Exports. California Department of Fish and Game, Sacramento, CA. Available: https://cawaterlibrary.net/document/department-of-fish-and-game-rationale-for-effects-of-exports/</a >

Latour, R. J. 2016. Explaining Patterns of Pelagic Fish Abundance in the Sacramento–San Joaquin Delta. Estuaries and Coasts 39(1):233–247. Available: https://www.researchgate.net/publication/276103376_Explaining_Patterns_of_Pelagic_Fish_Abundance_in_the_Sacramento-San_Joaquin_Delta</a >

Le, S., J. Josse, and F. Husson. 2008. FactoMineR: An R Package for Multivariate Analysis. Journal of Statistical Software 25(1):1–18. Available: https://www.jstatsoft.org/article/view/v025i01</a >

Mount, J., W. Fleenor, B. Gray, B. Herbold, and W. Kimmerer. 2013. Panel Review of the Draft Bay-Delta Conservation Plan. Prepared for the Nature Conservancy and American Rivers. September. Saracino & Mount, LLC, Sacramento, CA. Available: https://mavensnotebook.com/wp-content/uploads/2013/09/FINAL-BDCP-REVIEW-for-TNC-and-AR-Sept-2013.pdf</a >

Nobriga, M. L., and J. A. Rosenfield. 2016. Population Dynamics of an Estuarine Forage Fish: Disaggregating Forces Driving Long-Term Decline of Longfin Smelt in California’s San Francisco Estuary. Transactions of the American Fisheries Society 145(1):44–58. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/NRDC_TBI_DOW/NRDC-36.pdf</a >

R Core Team. 2021. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. Available: https://www.Rproject.org/</a >.

Ricker, W. E. 1954. Stock and Recruitment. Journal of the Fisheries Research Board of Canada 11(5):559–623. Available: https://scirp.org/journal/paperinformation.aspx?paperid=71782</a >

Schemel, L. E. 2001. Simplified Conversions between Specific Conductance and Salinity Units for Use with Data from Monitoring Stations. Interagency Ecological Program Newsletter 14(1):17–18.

Simenstad, C., J. Van Sickle, N. Monsen, E. Peebles, G. T. Ruggerone, and H. Gosnell. 2016. Independent Review Panel Report for the 2016 California WaterFix Aquatic Science Peer Review. Sacramento, CA: Delta Stewardship Council, Delta Science Program. Available: https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&ved=2ahUKEwj02eTxkLeBAxWpIUQIHdeHAW0QFnoECBQQAQ&url=https%3A%2F%2Fcoveredactions.deltacouncil.ca.gov%2FServices%2Fdownload.ashx%3Fu%3DC3DFE27C-E4FA-4A26-BE5D-3CEAE8983A45&usg=AOvVaw2OQ3UlsmUSykEIuCjQ3yE3&opi=89978449</a >

Thomson, J. R., W. J. Kimmerer, L. R. Brown, K. B. Newman, R. Mac Nally, W. A. Bennett, F. Feyrer, and E. Fleishman. 2010. Bayesian Change Point Analysis of Abundance Trends for Pelagic Fishes in the Upper San Francisco Estuary. Ecological Applications 20(5):1431–1448. Available: https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1890/09-0998.1</a >

Vehtari, A., A. Gelman, and J. Gabry. 2017. Practical Bayesian model evaluation using leave-one-out cross-validation and WAIC. Statistics and Computing 27(5): 1413–1432. Available: https://link.springer.com/article/10.1007/s11222-016-9696-4</a >

Watanabe, S. 2010. Asymptotic equivalence of Bayes cross validation and widely applicable information criterion in singular learning theory. Journal of Machine Learning Research 11: 3571–3594. Available: https://www.jmlr.org/papers/volume11/watanabe10a/watanabe10a.pdf</a >

Yao, Y., A. Vehtari, D. Simpson, and A. Gelman. 2018. Using Stacking to Average Bayesian Predictive Distributions (with Discussion). Bayesian Analysis 13(3):917–1007. Available: http://www.stat.columbia.edu/~gelman/research/published/stacking_paper_discussion_rejoinder.pdf</a >

Personal Communications

Nobriga, Matthew. Fish Biologist, Bay Delta Fish and Wildlife Office, U.S. Fish and Wildlife Service, Sacramento, CA. May 14, 2012—Email containing Excel file < logistic_parameters.xls> sent to Marin Greenwood, Aquatic Ecologist, ICF, Sacramento, CA. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11F_Smelt_Analysis/Nobriga_2012_Pers%20Comm_Email%20to%20M%20Greenwood.pdf</a >

Appendix 11G

This appendix number and letter are not used in the Final EIR/EIS.

Appendix 11H

ICF International. 2016. Biological Assessment for the California WaterFix. July. (ICF 00237.15.) Sacramento, CA. Prepared for the U.S. Department of the Interior, Bureau of Reclamation, Sacramento, CA. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626661.pdf</a >

Appendix 11I

ICF International. 2016. Biological Assessment for the California WaterFix. July. Sacramento, CA. Prepared for U.S. Department of the Interior, Bureau of Reclamation, Sacramento, CA. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/dwr1142/App_5.D_Methods_update.pdf

Appendix 11I1

Bartholow, J. M., and J. Heasley. 2006. Evaluation of Shasta Dam Scenarios Using a Salmon Population Model. Administrative Report. August. Fort Collins, CO. Prepared for U.S. Geological Survey, Reston, VA. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11I_Winter-Run_Life_Cycle_Model/Appendix%2011I1_Page%2028/Bartholow%20and%20Heasley_2006_Evaluation%20of%20Shasta%20Dam%20Scenarios.pdf</a >

Beacham, T. D., and C. B. Murray. 1989. Variation in Developmental Biology of Sockeye Salmon (Oncorhynchus nerka) and Chinook Salmon (Oncorhynchus tshawytscha) in British Columbia. Canadian Journal of Zoology 67:2081–2089. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626253.pdf</a >

Grover, A., A. Low, P. Ward, J. Smith, M. Mohr, D. Viele, and C. Tracy. 2004. Recommendations for Developing Fishery Management Plan Conservation Objectives for Sacramento River Spring Chinook. Sacramento, CA. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11I_Winter-Run_Life_Cycle_Model/Appendix%2011I1_Page%2028/Grover%20et%20al_2004_Recommendations%20for%20Developing%20FMP.pdf</a >

Jennings, E. and A. N. Hendrix. 2020. Spawn Timing of Winter-Run Chinook Salmon in the Upper Sacramento River. San Francisco Esutary and Watershed Science, 18 (2). Available: https://oceanview.pfeg.noaa.gov/wrlcm/documents/publications/Jennings%20and%20Hendrix%202020_winter%20run%20spawn%20timing%20and%20temperature.pdf</a >. Accessed: January 6, 2023.

Murray, C. B., and J. D. McPhail. 1988. Effect of Incubation Temperature on the Development of Five Species of Pacific Salmon (Oncorhynchus) Embryos and Alevins. Canadian Journal of Zoology 66(1):266–273. Available: https://www.researchgate.net/profile/Terry-Beacham/publication/240765554_Temperature_Egg_Size_and_Development_of_Embryos_and_Alevins_of_Five_Species_of_Pacific_Salmon_A_Comparative_Analysis/links/55d35acb08ae0a34172265c5/Temperature-Egg-Size-and-Development-of-Embryos-and-Alevins-of-Five-Species-of-Pacific-Salmon-A-Comparative-Analysis.pdf</a >

Poytress, W. R., and F. D. Carillo. 2010. Brood-Year 2007 Winter Chinook Juvenile Production Indices with Comparisons to Juvenile Production Estimates Derived from Adult Escapement. Final Annual Report 2007. Grant Number P0685507. May. Red Bluff, CA. Prepared for California Department of Fish and Game, Sacramento, CA, and California Bay Delta Authority, Sacramento, CA. Prepared by U.S. Fish and Wildlife Service, Red Bluff, CA. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11I_Winter-Run_Life_Cycle_Model/Appendix%2011I1_Page%2028/Poytress%20and%20Carillo_2010_Brood-Year%202007.pdf</a >

Ricker, W. E. 1975. Computation and Interpretation of Biological Statistics of Fish Populations. Fisheries Research Board of Canada, Bulletin 191:265–296. Available: https://waves-vagues.dfo-mpo.gc.ca/library-bibliotheque/1485.pdf</a >

Snider, B., B. Reavis, and S. Hill. 2001. Upper Sacramento River Winter-Run Chinook Salmon Escapement Survey, May-August 2000. Stream Evaluation Program Technical Report No. 01-1. April. Sacramento, CA. Prepared by California Department of Fish and Game, Habitat Conservation Division, Sacramento, CA. Available: https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&ved=2ahUKEwjkxvmTpbWBAxUpJkQIHXJACA4QFnoECBcQAQ&url=https%3A%2F%2Fnrm.dfg.ca.gov%2FFileHandler.ashx%3FDocumentID%3D33012&usg=AOvVaw2DLdbUsiC92ZRfp3bs4RDT&opi=89978449</a >

U.S. Fish and Wildlife Service. 1999. Effects of Temperature on Early-Life Survival of Sacramento River Fall-Run and Winter-Run Chinook Salmon. Final Report. Shepherdstown, WV. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626852.pdf</a >

Wells, B. K., C. B. Grimes, and J. B. Waldvogel. 2007. Quantifying the Effects of Wind, Upwelling, Curl, Sea Surface Temperature and Sea Level Height on Growth and Maturation of a California Chinook Salmon (Oncorhynchus tshawytscha). Fisheries Oceanography 16:363–382. Available: https://onlinelibrary.wiley.com/doi/10.1111/j.1365-2419.2007.00437.x</a >

Zeug, S., P. Bergman, B. Cavallo, and K. Jones. 2012. Application of a Life Cycle Simulation Model to Evaluate Impacts of Water Management and Conservation Actions on an Endangered Population of Chinook Salmon. Environmental Modeling and Assessment. DOI 10.1007/s10666-012-9306-6. Available: https://www.researchgate.net/publication/230823721_Application_of_a_Life_Cycle_Simulation_Model_to_Evaluate_Impacts_of_Water_Management_and_Conservation_Actions_on_an_Endangered_Population_of_Chinook_Salmon</a >

Niemela, Kevin pers. comm.

Berggren, T. J., and M. J. Filardo. 1993. An Analysis of Variables Influencing the Migration of Juvenile Salmonids in the Columbia River Basin. North American Journal of Fisheries Management 13(1):48–63. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11I_Winter-Run_Life_Cycle_Model/Appendix%2011I1_Page%2045/Berggren%20and%20Filardo_1993_Analysis%20of%20Variables.pdf</a >

Blake, A. and M. J. Horn. 2003. Acoustic Tracking of Juvenile Chinook Salmon Movement in the Vicinity of the Delta Cross Channel, Sacramento River, California – 2001 Study Results. Prepared for U.S. Geological Survey and SRI International. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/nmfs/spprt_docs/nmfs_exh4_horn_blake_2004.pdf</a >

Brandes, P. L., and J. S. McLain. 2001. Juvenile Chinook Salmon Abundance, Distribution, and Survival in the Sacramento-San Joaquin Estuary. Pages 39–95 in Contributions to the Biology of Central Valley Salmonids. Fish Bulletin 179:2. Available: http://escholarship.org/uc/item/6sd4z5b2</a >.

Bureau of Reclamation. 2019. Final Environmental Impact Statement Reinitiation of Consultation on the Coordinated Long-Term Operation of the Central Valley Project and State Water Project. December. Available: https://www.usbr.gov/mp/nepa/includes/documentShow.php?Doc_ID=41664</a >

Cavallo, B., P. Gaskill, J. Melgo, and S. C. Zeug. 2015. Predicting juvenile Chinook Salmon routing in riverine and tidal channels of a freshwater estuary. Environmental Biology of Fishes 98(6):1571-1582. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626163.pdf</a >

Healey, M. C. 1980. Utilization of the Nanaimo River Estuary by Juvenile Chinook Salmon (Oncorhynchus tshawytscha). U.S. National Marine Fisheries Service Fishery Bulletin 77:653–668. Available: https://spo.nmfs.noaa.gov/sites/default/files/pdf-content/1979/773/healey.pdf</a >

Healey, M. C. and F. P. Jordan. 1982. Observations on Juvenile Chum and Chinook and Spawning Chinook in the Nanaimo River, British Columbia, during 1975-1981. Canada Manuscript Report of Fisheries and Aquatic Sciences 1659:4. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11I_Winter-Run_Life_Cycle_Model/Appendix%2011I1_Page%2045/Healey%20and%20Jordan_1982_Observations_1975-1981.pdf</a >

Miller, J. A., A. Gray, and J. Merz. 2010. Quantifying the Contribution of Juvenile Migratory Phenotypes in a Population of Chinook Salmon Oncorhynchus tshawytscha. Marine Ecology Progress Series 408:227–240. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626836.pdf</a >

Moyle, P. B. 2002. Inland Fishes of California, Revised and Expanded. Berkeley: University of California Press.

Newman, K. B., and P. L. Brandes. 2010. Hierarchical modeling of juvenile Chinook salmon survival as a function of Sacramento-San Joaquin Delta water exports. North American Journal of Fisheries Management 30:157–169. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626199.pdf</a >

Perry, R. W. 2010. Survival and Migration Dynamics of Juvenile Chinook Salmon (Oncorhynchus tshawytscha) in the Sacramento-San Joaquin River Delta. Ph.D. Dissertation. University of Washington, Seattle, WA. Available: https://citeseerx.ist.psu.edu/document?repid=rep1&type=pdf&doi=a1b712f5e2af327d722ea1d9cb059170d3b4a06a</a >

Plumb, J. M., N. S. Adams, R. W. Perry, C. M. Holbrook, J. G. Romine, A. R. Blake, and J. R. Burau. 2015. Diel Activity Patterns of Juvenile Late Fall-run Chinook Salmon with Implications for Operation of a Gated Water Diversion in the Sacramento–San Joaquin River Delta. River Research and Applications. DOI: 10.1002/rra.2885. Available: https://onlinelibrary.wiley.com/doi/abs/10.1002/rra.2885</a >

R Core Team. 2012. R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing. Available: http://www.R-project.org</a >.

Raymond, H. L. 1968. Migration Rates of Yearling Chinook Salmon in Relation to Flows and Impoundments in the Columbia and Snake Rivers. Transactions of the American Fisheries Society 97:356–359. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11I_Winter-Run_Life_Cycle_Model/Appendix%2011I1_Page%2045/Raymond_1968_Migration%20Rates.pdf</a >

Schreck, C. B., J. C. Snelling, R. E. Ewing, C. S. Bradford, L. E. Davis, and C. H. Slater. 1994. Migratory Characteristics of Juvenile Spring Chinook Salmon in the Willamette River. Completion Report. Bonneville Power Administration. Available: https://inis.iaea.org/collection/NCLCollectionStore/_Public/27/028/27028783.pdf?r=1</a >

Sommer, T. R., W. C. Harrell, and M. L. Nobriga. 2005. Habitat Use and Stranding Risk of Juvenile Chinook Salmon on a Seasonal Floodplain. North American Journal of Fisheries Management 25:1493–1504. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626534.pdf</a >

Williams, J. G. 2001. Chinook Salmon in the Lower American River, California’s Largest Urban Stream. Pages 1–37 in R. Brown (ed.). Contributions to the Biology of Anadromous Salmonids of the Central Valley, California. Fish Bulletin 179:2. Sacramento: California Department of Fish and Game.

Appendix 11I2

Chelton DB. 1982. Large-scale response of the California Current to forcing by the wind stress curl. CalCOFI Rep 23:30–148. Available: https://citeseerx.ist.psu.edu/document?repid=rep1&type=pdf&doi=306d4fa8464fe528cb7da72fa8d6503ed263fb7f</a >

Grover, A., A. Lowe, P. Ward, J. Smith, M. Mohr, D. Viele, and C. Tracy. 2004. Recommendations for developing fishery management plan conservation objectives for Sacramento River winter Chinook and Sacramento River spring Chinook. Interagency Workgroup Progress Report. February 2004.

Hallock, R. J., & F.W. Fisher. 1985. Status of winter-run chinook salmon, Oncorhynchus tshawytscha, in the Sacramento River. State of California, Department of Fish and Game, Anadromous Fisheries Branch. Available: http://www.krisweb.com/biblio/ccv_cdfg_hallocketal_1985_winterrunstatus.pdf</a >

Hendrix, N., Criss, A., Danner, E., Greene, C.M., Imaki, H., Pike, A., and Lindley, S.T. 2014. Life cycle modeling framework for Sacramento River Winter run Chinook salmon, NOAA Technical Memorandum 530, National Marine Fisheries Service, Southwest Fisheries Science Center, Santa Cruz, Ca. Available: https://repository.library.noaa.gov/view/noaa/4738</a >

Michel, C. J., Notch, J. J., Cordoleani, F., Ammann, A. J., & Danner, E. M. 2021. Nonlinear survival of imperiled fish informs managed flows in a highly modified river. Ecosphere, 12(5). Available: https://esajournals.onlinelibrary.wiley.com/doi/full/10.1002/ecs2.3498</a >

NMFS. 1997. Proposed Recovery Plan for the Sacramento River Winter-Run Chinook Salmon. Long Beach, CA: National Marine Fisheries Service, Southwest Region.

Rykaczewski, R.R., D.M. Checkley, Jr. 2008. Influence of ocean winds on the pelagic ecosystem in upwelling regions. PNAS vol. 105 no. 6, 1965-1970. Available: https://www.pnas.org/doi/full/10.1073/pnas.0711777105</a >

Wells, B. K., C. B. Grimes, & J. B. Waldvogel. 2007. Quantifying the effects of wind, upwelling, curl, sea surface temperature and sea level height on growth and maturation of a California Chinook salmon (Oncorhynchus tshawytscha) population. Fisheries Oceanography, 16(4), 363-382. Available: https://onlinelibrary.wiley.com/doi/10.1111/j.1365-2419.2007.00437.x</a >

Appendix 11J

California Department of Water Resources. 2012. 2011 Georgiana Slough Non-Physical Barrier Performance Evaluation Project Report. Sacramento, CA: Bay-Delta Office, California Department of Water Resources. Available: https://www.usgs.gov/publications/2011-georgiana-slough-non-physical-barrier-performance-evaluation-project-report-0</a >

California Department of Water Resources. 2015. 2012 Georgiana Slough Non-Physical Barrier Performance Evaluation Project Report. Sacramento, CA: Bay-Delta Office, California Department of Water Resources. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626712.pdf</a >

California Department of Water Resources. 2016. Biological Assessment for the California WaterFix. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/exhibit104/docs/1_Cover_TitlePage_TOC_RevisedDraftBA.pdf</a >. Accessed: July 27, 2021.

Casas, A., D. Riaño, J. Greenberg, and S. Ustin. 2012. Assessing levee stability with geometric parameters derived from airborne LiDAR. Remote Sensing of Environment 117:281–288. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11J_Through-Delta_Surv_Juv_Salmonids/Casas%20et%20al_2012_Assessing%20Levee%20Stability.pdf</a >

T. Harvey & Associates and PRBO Conservation Science. 2010. Critical Erosion Levee Repair Sites, Fish and Habitat Monitoring, Year-3 (2010) Monitoring Report. December 29. Prepared for the State of California Department of Water Resources, Sacramento, California. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11J_Through-Delta_Surv_Juv_Salmonids/HT%20Harvey%20Associates%20and%20PRBO_2010_Year-3%20Monitoring%20Report.pdf</a >

Perry, R. W., A. C. Pope, J. G. Romine, P. L. Brandes, J. R. Burau, A. R. Blake, A. J. Ammann, C. J. Michel. 2018. Flow-Mediated Effects on Travel Time, Routing, and Survival of Juvenile Chinook Salmon in a Spatially Complex, Tidally Forced River Delta. Canadian Journal of Fisheries and Aquatic Sciences 75(11):1886–1901. Available: https://pubs.usgs.gov/publication/70198725</a >

Perry, R. W., A. C. Hansen, S. D. Evans, and T. J. Kock. 2019. Using the STARS Model to Evaluate the Effects of Two Proposed Projects for the Long-Term Operation of the State Water Project Incidental Take Permit Application and CEQA Compliance. Open-File Report 2019-1127. Version 2.0. February. U.S. Geological Survey, Reston, VA. Available: https://pubs.usgs.gov/publication/ofr20191127</a >

U.S. Fish and Wildlife Service. 2005. Flow-Habitat Relationships for Chinook Salmon Rearing in the Sacramento River between Keswick Dam and Battle Creek. August 2, 2005. Sacramento, CA: U.S. Fish and Wildlife Service. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/usfws_2005.pdf</a >

Personal Communications

Perry, Russell. Research Fisheries Biologist, Quantitative Fisheries Ecology Section, USGS Western Fisheries Research Center, Columbia River Research Laboratory, Cook, WA. June 18, 2019—Email containing Excel file <North Delta Routing Management Tool v2.1.xlsx> sent to Marin Greenwood, Aquatic Ecologist, ICF, Sacramento, CA. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11J_ThroughDeltaSurvivalJuvenileSalmonids/Perry_2019_pers-comm_NorthDeltaRoutingMgmtTool.pdf</a >

Appendix 11J

T. Harvey & Associates and PRBO Conservation Science. 2010. Critical Erosion Levee Repair Sites, Fish and Habitat Monitoring, Year-3 (2010) Monitoring Report. December 29. Prepared for the State of California Department of Water Resources, Sacramento, California. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11J_Through-Delta_Surv_Juv_Salmonids/HT%20Harvey%20Associates%20and%20PRBO_2010_Year-3%20Monitoring%20Report.pdf</a >

Perry, R. W., A. C. Pope, J. G. Romine, P. L. Brandes, J. R. Burau, A. R. Blake, A. J. Ammann, C. J. Michel. 2018. Flow-Mediated Effects on Travel Time, Routing, and Survival of Juvenile Chinook Salmon in a Spatially Complex, Tidally Forced River Delta. Canadian Journal of Fisheries and Aquatic Sciences 75(11):1886–1901. Available: https://pubs.usgs.gov/publication/70198725</a >

Perry, R. W., A. C. Hansen, S. D. Evans, and T. J. Kock. 2019. Using the STARS Model to Evaluate the Effects of Two Proposed Projects for the Long-Term Operation of the State Water Project Incidental Take Permit Application and CEQA Compliance. Open-File Report 2019-1127. Version 2.0. February. U.S. Geological Survey, Reston, VA. Available: https://pubs.usgs.gov/publication/ofr20191127</a >

Personal Communications

Perry, Russell. Research Fisheries Biologist, Quantitative Fisheries Ecology Section, USGS Western Fisheries Research Center, Columbia River Research Laboratory, Cook, WA. June 18, 2019—Email containing Excel file <North Delta Routing Management Tool v2.1.xlsx> sent to Marin Greenwood, Aquatic Ecologist, ICF, Sacramento, CA. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11J_ThroughDeltaSurvivalJuvenileSalmonids/Perry_2019_pers-comm_NorthDeltaRoutingMgmtTool.pdf</a >

Appendix 11K

Bartholow, J. M. 2004. Modeling Chinook Salmon with SALMOD on the Sacramento River, California. Hydroecologie Applique 14(1):193–219. Available: https://www.hydroecologie.org/articles/hydro/abs/2004/01/hydro04112/hydro04112.html</a >

Beecher, H. A. 2017. Comment 1: Why it is Time to Put PHABSIM out to Pasture. Fisheries 42(10):508–510. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11K_Weighted_Usable_Area_Analysis/Beecher_2017_Comment%201.pdf</a >

Beecher, H. A., B. A. Caldwell, S. B. DeMond, D. Seiler, and S. N. Boessow. 2010. An Empirical Assessment of PHABSIM Using Long-Term Monitoring of Coho Salmon Smolt Production in Bingham Creek, Washington. North American Journal of Fisheries Management 30:1529–1543. Available: https://afspubs.onlinelibrary.wiley.com/doi/abs/10.1577/M10-020.1</a >

Bourgeois, G., R. A. Cunjak, D. Caissie, and N. El-Jabi. 1996. A Spatial and Temporal Evaluation of PHABSIM in Relation to Measured Density of Juvenile Atlantic Salmon in a Small Stream. North American Journal of Fisheries Management 16:154–166. Available: https://www.researchgate.net/publication/240765006_A_Spatial_and_Temporal_Evaluation_of_PHABSIM_in_Relation_to_Measured_Density_of_Juvenile_Atlantic_Salmon_in_a_Small_Stream_1</a >

Bovee, K. D., B. L. Lamb, J. M. Bartholow, C. B. Stalnaker, J. Taylor, and J. Henriksen. 1998. Stream Habitat Analysis Using the Instream Flow Incremental Methodology. USGS/BRD-1998-0004. Fort Collins, CO. Available: https://apps.dtic.mil/sti/tr/pdf/ADA361209.pdf</a >

Bratovich, P., J. Weaver, C. Addley, and C. Hammersmark. 2017. Lower American River. Biological Rationale, Development and Performance of the Modified Flow Management Standard. Exhibit ARWA-702. Prepared for Water Forum. Sacramento, CA. Available: https://www.waterforum.org/wp-content/uploads/2017/12/ARWA-702-Biological-Rationale-Development-and-Performance-of-the-Modified-Flow-Management-Standard-00023990xE2E14.pdf</a >

ESSA Technologies Ltd. 2011. Sacramento River Ecological Flows Tool (SacEFT): Record of Design. Version 2.00. Vancouver, BC. Prepared for The Nature Conservancy, Chico, CA. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1125%20ESSA_2011_SacEFT_V2_Record-of-Design.pdf</a >

ICF International. 2016. Biological Assessment for the California WaterFix, Attachment 5.D.1, Reclamation Salmon Mortality Model. ICF 00237.15. Sacramento, CA. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/exhibit104/docs/App_5.D_Methods_Att1_Egg_Mortality_RevisedDraftBA.pdf</a >

Naman, S. M., J. S. Rosenfeld, J. R. Neuswanger, E. C. Enders, and B. C. Eaton. 2019. Comparing, Correlative and Bioenergetics-based Habitat Suitability Models for Drift-feeding Fishes. Freshwater Biology 64:1613–1626. Available: https://www.researchgate.net/profile/Sean-Naman/publication/334103998_Comparing_correlative_and_bioenergetics-based_habitat_suitability_models_for_drift-feeding_fishes/links/5d16e8dc299bf1547c872098/Comparing-correlative-and-bioenergetics-based-habitat-suitability-models-for-drift-feeding-fishes.pdf</a >

Naman, S. M., J. S. Rosenfeld, J. R. Neuswanger, E. C. Enders, J. W. Hayes, E. O. Goodwin, I. G. Jowett, and B. C. Eaton. 2020. Bioenergetic Habitat Suitability Curves for Instream Flow Modeling: Introducing User-Friendly Software and its Potential Application. Fisheries 45:605–613. Available: https://afspubs.onlinelibrary.wiley.com/doi/abs/10.1002/fsh.10489</a >

Payne, T. R. 2005. Addendum to Evaluation of Project Effects on Instream Flows and Fish Habitat. Phase 2 Report. SP F-16. Sacramento, CA. Prepared for T. J. Mills, T. Sommer, and B. Cavallo, Oroville Facilities Relicensing Environmental Work Group, DWR. Sacramento, CA.

Payne, T. R. and M. Allen. 2004. Evaluation of Project Effects on Instream Flows and Fish Habitat. Phase 2 Interim Report. SP F-16. Sacramento, CA. Prepared for T. J. Mills, T. Sommer, and B. Cavallo, Oroville Facilities Relicensing Environmental Work Group, DWR. Sacramento, CA. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11K_Weighted_Usable_Area_Analysis/Payne_Allen_2004_SP-F16%20Phase%202%20Report.pdf</a >

Railsback, S. F. 2016. Why it is Time to Put PHABSIM Out to Pasture. Fisheries 41:720-725. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/0.7.115.15886-000001.pdf</a >

Reiser, D. W., and P. J. Hilgert. 2018. A Practitioner’s Perspective on the Continuing Technical Merits of PHABSIM. Fisheries 43:278-283. Available: https://afspubs.onlinelibrary.wiley.com/doi/abs/10.1002/fsh.10082</a >

Stalnaker, C. B., I. Chisholm, A. Paul. 2017. Don’t Throw out the Baby (PHABSIM) with the Bathwater; Bringing Scientific Credibility to Use of Hydraulic Models, Specifically PHABSIM. Fisheries 42(10):510–516. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11K_Weighted_Usable_Area_Analysis/Stalnaker%20et%20al_2017_PHABSIM.pdf</a >

Thomas R. Payne & Associates. 2002. Evaluation of Project Effects on Instream Flows and Fish Habitat. Phase 1 Report. SP F-16. Sacramento, CA. Prepared for Oroville Facilities Relicensing Environmental Work Group, DWR. Sacramento, CA.

U.S. Fish and Wildlife Service. 1985. Flow Needs of Chinook Salmon in the Lower American River. Final Report on the 1981 Lower American River Flow Study. Sacramento, CA. Prepared for Bureau of Reclamation, Sacramento, CA.

U.S. Fish and Wildlife Service. 2003a. Flow-Habitat Relationships for steelhead and fall, late-fall, and winter-run Chinook salmon spawning in the Sacramento River between Keswick Dam and Battle Creek. February 4, 2003. Sacramento, CA. Available: http://personales.upv.es/fmcapel/data/Sacramento%20River%20Spawning%20Final%20Report%20Feb%204,%202003.pdf</a >

U.S. Fish and Wildlife Service. 2003b. Comparison of PHABSIM and 2-D Modeling of Habitat for Steelhead and Fall-run Chinook Salmon Spawning in the Lower American River. February 4, 2003. Sacramento, CA. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1132%20USFWS.%202003b.%20American%20River%20PHABSIM%202D%20Final%20Report.pdf</a >

U.S. Fish and Wildlife Service. 2005a. Flow-Habitat Relationships for Chinook Salmon Rearing in the Sacramento River between Keswick Dam and Battle Creek. August 2, 2005. Sacramento, CA. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/usfws_2005.pdf</a >

U.S. Fish and Wildlife Service. 2005b. Flow-Habitat Relationships for Fall-run Chinook Salmon Spawning in the Sacramento River between Battle Creek and Deer Creek. August 10, 2005. Sacramento, CA. Available:

U.S. Fish and Wildlife Service. 2006. Sacramento River (Keswick Dam to Battle Creek) Redd Dewatering and Juvenile Stranding Final Report. June 22, 2006. Sacramento, CA. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1140%20USFWS%202006.pdf</a >

Personal Communications

Gard, Mark. Fish and Wildlife Biologist. U.S. Fish and Wildlife Service. July 5, 2015—Email to Sophie Unger, Senior Fish Biologist, ICF, Sacramento, CA. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11K_Weighted_Usable_Area_Analysis/Gard_2015_Pers%20Comm_July%205%202015%20Email%20to%20S%20Unger.pdf</a >

Robinson, Donald. Senior Systems Ecologist. ESSA Technologies, Vancouver, BC. June 16, 2015—Email to Clint Alexander, President, ESSA Technologies, Vancouver, BC. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11K_Weighted_Usable_Area_Analysis/Robinson_2015_Pers%20Comm_June%2016%202015%20Email%20to%20C%20Alexander.pdf

Appendix 11L

ICF International. 2016. Biological Assessment for the California WaterFix. July. (ICF 00237.15.) Sacramento, CA. Prepared for U.S. Department of the Interior, Bureau of Reclamation, Sacramento, CA. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11L_SturgeonAnalysis/ICF%20International_2016_Biological%20Assessment%20for%20the%20California%20WaterFix.pdf

Appendix 11M

Aceituno, M. E. 1993. The relationship between instream flow and physical habitat availability for Chinook salmon in the Stanislaus River, California. U.S. Department of the Interior. Fish & Wildlife Service, Sacramento, California. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626161.pdf</a >

Acierto, K. R., J. Israel, J. Ferreira, and J. Roberts. 2014. Estimating juvenile winter-run and spring-run Chinook salmon entrainment onto the Yolo Bypass over a notched Fremont Weir. California Fish and Game 100(4):630–639. Available: https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&ved=2ahUKEwj-79-s9rSBAxVKJUQIHeE6B68QFnoECBEQAQ&url=https%3A%2F%2Fnrm.dfg.ca.gov%2FFileHandler.ashx%3FDocumentID%3D99272&usg=AOvVaw155yQ1B2PfNaPEDwMarexb&opi=89978449</a >

Bellido-Leiva, F. J., R. A. Lusardi, and J. R. Lund. 2021. Modeling the Effect of Habitat Availability and Quality on Endangered Winter-Run Chinook Salmon (Oncorhynchus tshawytscha) Production in The Sacramento Valley. Ecological Modelling 447. Available: https://www.osti.gov/servlets/purl/1850266</a >

California Data Exchange Center. 2022. California Department of Water Resources, Rating Table for Sacramento River at Verona. November 7, 2022. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11M_Yolo_Sutter_Bypass_Weir_Spill_Analysis/CDEC_2022_Rating%20Table_Sacramento%20River%20at%20Verona.pdf</a >

CH2M HILL Engineers, Inc. 2017. Sutter and Yolo Bypass HEC-RAS Two-Dimension Hydraulic Model. Prepared for State of California Department of Water Resources. June. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11M_Yolo_Sutter_Bypass_Weir_Spill_Analysis/CH2M%20Hill_2017_Appendix%204_Sutter%20and%20Yolo%20Bypass%20HEC-RAS.pdf</a >

Cordoleani, F., J. Notch, A. S. McHuron, C. J. Michel, and A. J. Ammann. 2019. Movement and Survival Rates of Butte Creek Spring-Run Chinook Salmon Smolts from the Sutter Bypass to the Golden Gate Bridge in 2015, 2016, and 2017. U.S. Department of Commerce, NOAA Tech. Memo. NMFS-SWFSC-618. Available: https://doi.org/10.25923/cwry-bx03</a >.

Cordoleani, F., W. H. Satterthwaite, M. E. Daniels, M. R. Johnson. 2020a. Using Life-Cycle Models to Identify Monitoring Gaps for Central Valley Spring-Run Chinook Salmon. San Francisco Estuary and Watershed Science 18(4):1-30. Available: https://escholarship.org/uc/item/98x3435s</a >

Cordoleani, F., W. H. Satterthwaite, M. E. Daniels, M. R. Johnson. 2020b. Appendix B: Habitat Rearing Capacity Estimations. San Francisco Estuary and Watershed Science 18(4):1–3. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11M_Yolo_Sutter_Bypass_Weir_Spill_Analysis/Cordoleani%20et%20al_2020_Appendix%20B_Habitat%20Rearing%20Capacity%20Estimations.pdf</a >

Feyrer, F., T. R. Sommer, and R. Baxter. 2005. Spatial-Temporal Distribution and Habitat Associations of Age-0 Splittail in the Lower San Francisco Estuary Watershed. Copeia 2005(1):159–168. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/swrcb/swrcb_feyrer2005.pdf</a >

Feyrer, F., T. Sommer, and W. Harrell. 2006a. Managing Floodplain Inundation for Native Fish: Production Dynamics of Age-0 Splittail (Pogonichthys macrolepidotus) in California’s Yolo Bypass. Hydrobiologia 573:213-226. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/swrcb/swrcb_feyrer2006.pdf</a >

Feyrer, F., T. Sommer, and W. Harrell. 2006b. Importance of Flood Dynamics versus Intrinsic Physical Habitat in Structuring Fish Communities: Evidence from Two Adjacent Engineered Floodplains on the Sacramento River, California. North American Journal of Fisheries Management 26:408–417. https://www.tandfonline.com/doi/abs/10.1577/M05-113.1</a >

Grant, J. W. A., and D. L. Kramer. 1990. Territory Size as a Predictor of the Upper Limit to Population Density of Juvenile Salmonids in Streams. Canadian Journal of Fisheries and Aquatic Sciences 47:1,724–1,737. Available: https://www.semanticscholar.org/paper/Territory-Size-as-a-Predictor-of-the-Upper-Limit-to-Grant-Kramer/c7d63f8a937f3f5d7f20065b399ce84a373c91da</a >

Hampton, M. 1997. Microhabitat Suitability Criteria for Anadromous Salmonids of the Trinity River. U.S. Fish and Wildlife Service. Arcata, CA. Available: https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&ved=2ahUKEwjU6sCO87SBAxXUBEQIHYXSDI4QFnoECA0QAQ&url=https%3A%2F%2Fwww.trrp.net%2FDataPort%2Fdoc.php%3Fid%3D1484&usg=AOvVaw3QkpV34uCTswF6iXRg9rae&opi=89978449</a >

Hinkelman, T. M., J. Myfanwy, and J. E. Merz. 2017. Yolo Bypass Salmon Benefits Model: Modeling the Benefits of Yolo Bypass Restoration Actions on Chinook Salmon. Prepared by Cramer Fish Sciences for United States Bureau of Reclamation and California Department of Water Resources. West Sacramento, CA.

Katz, J. V. E., C. Jeffres, J. L. Conrad, T. R. Sommer, J. Martinez, S. Brumbaugh, N. Corline, and P. B. Moyle. 2017. Floodplain Farm Fields Provide Novel Rearing Habitat for Chinook Salmon. Plos One 2017:1–16. Available: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0177409</a >

Limm, M. P. and M. P. Marchetti. 2009. Marchetti. Juvenile Chinook Salmon (Oncorhynchus Tshawytscha) Growth in Off-Channel and Main-Channel Habitats on the Sacramento River, CA Using Otolith Increment Widths. Environmental Biology of Fishes 85:141–151. Available: https://link.springer.com/article/10.1007/s10641-009-9473-8</a >

Merced Irrigation District. 2013. Technical Memorandum 3-5. Instream Flow (PHABSIM) Downstream of Crocker-Huffman Dam. Merced Hydroelectric Project, FERC Project No. 2179.

Moyle, P. B. 2002. Inland Fishes of California. Second edition. University of California Press, Berkeley.

Moyle, P. B., R. D. Baxter, T. Sommer, T.C. Foin, and S. A. Matern. 2004. Biology and Population Dynamics of Sacramento Splittail (Pogonichthys macrolepidotus) in the San Francisco Estuary: A Review. San Francisco Estuary and Watershed Science 2(2):1–47. Available: https://escholarship.org/content/qt61r48686/qt61r48686.pdf?t=q5av46</a >

Moyle, P. B., R. M. Quiñones, J. V. Katz, and J. Weaver. 2015. Fish Species of Special Concern in California. Third Edition. California Department of Fish and Wildlife. Sacramento, CA. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=107740&inline</a >

Poytress, W. R., J. J. Gruber, F. D. Carrillo, and S. D. Voss. 2014. Compendium Report of Red Bluff Diversion Dam Rotary Trap Juvenile Anadromous Fish Production Indices for Years 2002–2012. Report of U.S. Fish and Wildlife Service to California Department of Fish and Wildlife and Bureau of Reclamation. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1133%20Poytress%20et%20al.%202014.%20Juvenile%20Anadromous%20Fish%20Monitoring%20Compendium%20Report%20(2002-2012).pdf</a >

Sommer, T., R., M. L. Nobriga, W. C., Harrell, W. Batham, R. Brown, and W.J. Kimmerer. 2001a. Floodplain Rearing of Juvenile Chinook Salmon: Evidence of Enhanced Growth and Survival. Canadian Journal of Fisheries and Aquatic Sciences 58:325–333. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/sfwc/spprt_docs/sfwc_exh3_sommer_floodplain_rearing.pdf</a >

Sommer, T., B. Harrell, M. Nobriga, R. Brown, P. Moyle, W. Kimmerer, and L. Schemel. 2001b. California’s Yolo Bypass: Evidence that Flood Control Can Be Compatible with Fisheries, Wetlands, Wildlife, and Agriculture. Fisheries 26:6–16. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/sldmwa/sommeretal2001b.pdf

Sommer, T. R., L. Conrad, G. O’Leary, F. Feyrer, and W. C. Harrell. 2002. Spawning and Rearing of Splittail in a Model Floodplain Wetland. Transactions of the American Fisheries Society 131:966–974. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1137%20Sommer_et_al_2002_splittail_spawning_floodplain.pdf</a >

Sommer, T. R., W. C. Harrell, R. Kurth, F. Feyrer, S. C. Zeug, and G. O’Leary. 2004. Ecological Patterns of Early Life Stages of Fishes in a Large River-Floodplain of the San Francisco Estuary. American Fisheries Society Symposium 39:111–123. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11M_YoloSutterBypassFlowWeirSpillAnalysis/Sommer_etal_2004_Ecological_Patterns_of_Early_Life_Stages_of_Fishes.pdf</a >

Sommer, T. R., W. C. Harrell, and M. L. Nobriga. 2005. Habitat Use and Stranding Risk of Juvenile Chinook Salmon on a Seasonal Floodplain. North American Journal of Fisheries Management 25:1493–1504. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626534.pdf</a >

Sommer, T. R., W. C. Harrell, Z. Matica, and F. Feyrer. 2008. Habitat Associations and Behavior of Adult and Juvenile Splittail (Cyprinidae: Pogonichthys macrolepidotus) in a Managed Seasonal Floodplain Wetland. San Francisco Estuary and Watershed Science, 6(2):1–16. http://escholarship.org/uc/item/85r15611</a >.

Takata, L., T. R. Sommer, J. L. Conrad, and B. M. Schreier. 2017. Rearing and migration of juvenile Chinook salmon (Oncorhynchus tshawytscha) in a large river floodplain. Environmental Biology of Fishes 100(9):1105–1120. Available: https://link.springer.com/article/10.1007/s10641-017-0631-0</a >

U.S. Fish and Wildlife Service. 2005. Flow-Habitat Relationships for Chinook Salmon Rearing in the Sacramento River between Keswick Dam and Battle Creek. August 2, 2005. Sacramento, CA. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/usfws_2005.pdf</a >

Whipple A., T. Grantham, G. Desanker, L. Hunt, A. Merrill, B. Hackenjos, R. Askevold. 2019. Chinook Salmon Habitat Quantification Tool: User Guide (Version 1.0). Prepared for American Rivers. Funded by the Natural Resources Conservation Service Conservation Innovation Grant (#69-3A75-17-40), Water Foundation and Environmental Defense Fund. A report of SFEI-ASC’s Resilient Landscapes Program, Publication #953. San Francisco Estuary Institute, Richmond, CA. Available: https://www.sfei.org/sites/default/files/biblio_files/SalmonHQT_UserGuide_2019.pdf

Appendix 11N

Ayres Associates. 2001. Two-Dimensional Modeling of the Lower American River and Analysis of Spawning Bed Mobilization. Presented to Lower American River Task Force Fish Working Group Technical Subcommittee. April 27, 2001 Slide Show Presentation.

Bratovich, P., J. Weaver, C. Addley, C. Hammersmark 2017. Lower American River. Biological Rationale, Development and Performance of the Modified Flow Management Standard. Exhibit ARWA-702. Prepared for Water Forum. Sacramento, CA. Available: https://www.waterforum.org/wp-content/uploads/2017/12/ARWA-702-Biological-Rationale-Development-and-Performance-of-the-Modified-Flow-Management-Standard-00023990xE2E14.pdf</a >

Cain, J. and C. Monohan, 2008. Estimating Ecologically Based Flow Targets for the Sacramento and Feather Rivers. The Natural Heritage Institute, April 2008. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1126%20Cain_and_Monohan_2008_Sacramento-and-Feather-Env-Flows-Doc_April2008.pdf</a >

California Data Exchange Center. 2022. California Department of Water Resources, Rating Table for Feather River near Gridley. September 20, 2022. Available: https://www.cnrfc.noaa.gov/formHistGraphRVF_loop.php?id=GRIC1&loopno=00</a >

Enders, E. 2003. The Effect of Turbulence on the Cost of Swimming for Juvenile Atlantic Salmon. Canadian Journal of Fisheries and Aquatic Sciences. September 2003. Available: https://www.researchgate.net/publication/263151937_The_Effect_of_Turbulence_on_the_Cost_of_Swimming_for_Juvenile_Atlantic_Salmon</a >

Fairman, D. 2007. A Gravel Budget for the Lower American River. MS Thesis. California State University, Sacramento, CA. Available: https://www.waterforum.org/wp-content/uploads/2019/08/FISH-Plan-2019-Action-Update-Draft-Report-8.219.pdf</a >

Jarrett, P., and D. Killam. 2015. Redd Dewatering and Juvenile Stranding in the Upper Sacramento River Year 2014–2015. California Department of Fish and Wildlife. RBFO Technical Report No. 02-2015. Redd Bluff Fisheries Office, Red Bluff, CA. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626387.pdf</a >

Liao, J. 2007. A Review of Fish Swimming Mechanics and Behavior in Altered Flows. Philosophical Transactions of the Royal Society 362:1973–1993. Available: https://royalsocietypublishing.org/doi/10.1098/rstb.2007.2082</a >

Martin, B., R. Nisbet, A. Pike, C. Michel, and E. Danner. 2015. Sport Science for Salmon and Other Species: Ecological Consequences of Metabolic Power Constraints. Ecology Letters. Available: https://onlinelibrary.wiley.com/doi/10.1111/ele.12433</a >

May, C., B. Pryor, T. Lisle, and M. Lang. 2009. Coupling Hydrodynamic Modeling and Empirical Measures of Bed Mobility to Predict the Risk of Scour and Fill of Salmon Redds in a Large Regulated River. Water Resources Research 45:1-22. Available: https://agupubs.onlinelibrary.wiley.com/doi/full/10.1029/2007WR006498</a >

Newton, M., J. A. Dodd, J. Barry, P. Boylan, and C. E. Adams. 2018. The Impact of a Small-Scale Riverine Obstacle on the Upstream Migration of Atlantic Salmon. Hydrobiologia 806:251–264. Available: https://link.springer.com/article/10.1007/s10750-017-3364-3</a >

National Marine Fisheries Service. 2018. Recovery Plan for the Southern Distinct Population Segment of North American Green Sturgeon (Acipenser medirostris). West Coast Region, Central Valley Office. Sacramento, CA Available: https://www.fisheries.noaa.gov/resource/document/final-recovery-plan-southern-distinct-population-segment-north-american-green</a >

Northern California Water Association. 2019. Re-managed Instream Flows in the Sacramento River Basin. Available: https://norcalwater.org/wp-content/uploads/2012/01/Re-managed-Instream-Flows-in-the-Sac-River-Basin.pdf</a >. Accessed: May 20, 2021. Updated 2019.

Schaffter, R. G. 1997. White Sturgeon Spawning Migrations and Location of Spawning Habitat in the Sacramento River, California. California Fish and Game 83(1):1-20. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1112%20Shaffter_et_al_1997_white_sturgeon_spwaning_SacR.pdf</a >

Seesholtz, A. M. Manuel, and J. Van Eenennaam. 2015. First Documented Spawning and Associated Habitat Conditions for Green Sturgeon in the Feather River, California. Environmental Biology of Fish 98:905–912. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626713.pdf</a >

U.S. Fish and Wildlife Service. 2003. Flow-Habitat Relationships for steelhead and fall, late-fall, and winter-run Chinook salmon spawning in the Sacramento River between Keswick Dam and Battle Creek. February 4, 2003. Sacramento, CA. Available: http://personales.upv.es/fmcapel/data/Sacramento%20River%20Spawning%20Final%20Report%20Feb%204,%202003.pdf</a >

U.S. Fish and Wildlife Service. 2006. Sacramento River (Keswick Dam to Battle Creek) redd dewatering and juvenile stranding. June 22, 2006. Sacramento, CA. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11N_OtherFlowRelatedUpstreamAnalyses/USFWS_2006_Sac_dewatering_stranding_final_report%20.pdf</a >

U.S. Fish and Wildlife Service. 2016. Central Valley Improvement Act Fisheries Investigations. Annual Progress Report. Prepared by Staff of Anadromous Fish Restoration Program. Lodi, CA. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11N_OtherFlowRelatedUpstreamAnalyses/USFWS%202016.%20CVPIA%20Annual%20Progress%20Report%20Fiscal%20Year%202016.pdf</a >

Personal Communications

Killam, D. 2021. Senior Environmental Scientist. California Department of Fish and Wildlife. April 12, 2021—Email to S. Unger, Senior Fish Biologist, ICF, Sacramento, CA.

Kindopp, J. 2021a. Senior DWR Environmental Scientist. California Department of Water Resources. April 23, 2021—Email to S. Unger, Senior Fish Biologist, ICF, Sacramento, CA.

Kindopp, J. 2021b. Senior DWR Environmental Scientist. California Department of Water Resources. April 20, 2021—Email to S. Unger, Senior Fish Biologist, ICF, Sacramento, CA. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11N_Other_Flow_Related_Upstr_Analysis/Kindopp_2021_Pers%20Comm_April%2020%202021%20Email%20to%20S%20Unger.pdf</a >

Kindopp, J. 2022. Senior DWR Environmental Scientist. California Department of Water Resources. March 8, 2022—Email with attachments to S. Unger, Senior Fish Biologist, ICF, Sacramento, CA. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11N_Other_Flow_Related_Upstr_Analysis/Kindopp_2022_Pers%20Comm_March%208%202022%20Email%20to%20S%20Unger.pdf</a >

Kundargi, K. 2015. Senior Environmental Scientist. California Department of Fish and Wildlife. August 12, 2015—Email to D. Killam, Senior Environmental Scientist.California Department of Fish and Wildlife. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11N_Other_Flow_Related_Upstr_Analysis/Kundargi_2015_Pers%20Comm_August%2012%202015%20Email%20to%20D%20Killam.pdf</a >

Seesholtz, A. 2021. Senior DWR Environmental Scientist. California Department of Water Resources. April 14, 2021—Email to S. Unger, Senior Fish Biologist, ICF, Sacramento, CA.

Appendix 11O

Alderdice, D. F., and F. P. J. Velsen. 1978. Relation Between Temperature and Incubation Time for Eggs of Chinook Salmon (Oncorhynchus tshawytscha). Journal of the Fisheries Board of Canada. Available: https://doi.org/10.1139/f78-010</a >.

Anderson, J. J. 2018. Using River Temperature to Optimize Fish Incubation Metabolism and Survival: A Case for Mechanistic Models. bioRxiv 257154. doi: https://doi.org/10.1101/257154</a >.

Martin, B. T., A. Pike, S. N. John, N. Hamda, J. Roberts, S. T. Lindley, and E. M. Danner. 2017. Phenomenological vs. Biophysical Models of Thermal Stress in Aquatic Eggs. Ecology Letters 20:50–59. doi: 10.1111/ele.12705. Available: https://onlinelibrary.wiley.com/doi/full/10.1111/ele.12705</a >

State Water Resources Control Board. 1999. Water Right Decision 1641. December 29. Available: https://cawaterlibrary.net/document/water-rights-decision-1641-d-1641/</a >.

Zeug, S., P. Bergman, B. Cavallo, and K. Jones. 2012. Application of a Life Cycle Simulation Model to Evaluate Impacts of Water Management and Conservation Actions on an Endangered Population of Chinook Salmon. Environmental Modeling and Assessment doi: 10.1007/s10666-012-9306-6. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_11O_AndersonMartinModels/Zeug_et_al_IOS%20%7B2012).pdf</a >

Appendix 11P

Michel, Cyril. Assistant Project Scientist. University of California, Santa Cruz; affiliated with Southwest Fisheries Science Center – Fisheries Ecology Division, National Marine Fisheries Service, Santa Cruz, CA. February 24, 2021—Email providing R code and related input files to reproduce Michel et al. (2021) analysis to Marin Greenwood, Aquatic Ecologist, ICF. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11P_Riverine_Flow_Surv/Michel_2021_Pers%20Comm_Email%20to%20M%20Greenwood%20(R%20Code%20and%20Related%20Input%20Files).pdf</a >

Michel, C., J. Notch, F. Cordoleani, A. Ammann, and E. Danner. 2021. Nonlinear Survival of Imperiled Fish Informs Managed Flows in a Highly Modified River. Ecosphere 12(5). DOI: 10.1002/ecs2.3498. Available: https://esajournals.onlinelibrary.wiley.com/doi/full/10.1002/ecs2.3498

Appendix 11P1

California Data Exchange Center. 2019. T WRWSIHIST 2104121329/ Department of Water Resources, California Cooperative Snow Surveys. Chronological Reconstructed Sacramento and San Joaquin Valley, Water Year Hydrologic Classification Indices. Available: https://cdec.water.ca.gov/reportapp/javareports?name=WSIHIST</a >.

Red Bluff Fish & Wildlife Office, USFWS (collated into a spreadsheet by LeAnne Rojas, 4/15/2019, using data from: http://www.cbr.washington.edu/sacramento/data/query_redbluff_daily.html</a >)

GCID (collated into a spreadsheet by LeAnne Rojas on 4/16/2019, based on data provided by GCID (Josef Loera) via John Spranza (HDR) on 4/1/2019) https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11P_Riverine_Flow_Surv/GCID_2019_GCIDDailyDataCatchSummaries.pdf</a >

CDFW (collated into a spreadsheet by LeAnne Rojas on 4/18/2019, from data provided by Diane Coulon (DFW) on 4/11/2019) https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11P_Riverine_Flow_Surv/CDFW_2019_TisdaleWeirRotaryScrewTrapDailyCatchEffortSummaries.pdf</a >

CDFW (collated into a spreadsheet by LeAnne Rojas based on workbooks provided by Jason Julienne (DFW) on 4/24/2019) https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App11P_Riverine_Flow_Surv/CDFW_2019_KnightsLandingRotaryScrewTrapDailyCatchEffort%20Summaries.pdf</a >

Appendix 11Q

Feyrer, F., T. Sommer, and S. B. Slater. 2009. Old School vs. New School: Status of Threadfin Shad (Dorosoma petenense) Five Decades After Its Introduction to the Sacramento–San Joaquin Delta. San Francisco Estuary and Watershed Science 7(1). Available: https://escholarship.org/content/qt4dt6p4bv/qt4dt6p4bv_noSplash_acf20c3b1010e6557d6ff30419e5e9d1.pdf?t=q5a6xl</a >

Harvey, B. N., D. P. Jacobson, and M. A. Banks. 2014. Quantifying the Uncertainty of a Juvenile Chinook Salmon Race Identification Method for a Mixed-Race Stock. North American Journal of Fisheries Management 34(6):1177–1186. Available: https://figshare.com/articles/journal_contribution/Quantifying_the_Uncertainty_of_a_Juvenile_Chinook_Salmon_Race_Identification_Method_for_a_Mixed_Race_Stock/1244914</a >

Kimmerer, W. J., and M. L. Nobriga. 2008. Investigating Particle Transport and Fate in the Sacramento-San Joaquin Delta Using a Particle Tracking Model. San Francisco Estuary and Watershed Science 6(1). https://escholarship.org/uc/item/547917gn</a >

Kimmerer, W. J., E. S. Gross, and M. L. MacWilliams. 2009. Is the Response of Estuarine Nekton to Freshwater Flow in the San Francisco Estuary Explained by Variation in Habitat Volume? Estuaries and Coasts 32(2):375–389. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1091%20Kimmerer%20et%20al%202009_EstuariesCoasts_HabitatAbundance.pdf</a >

Personal Communication

Nobriga, Matthew. Fish Biologist, Bay Delta Fish and Wildlife Office, U.S Fish and Wildlife Service, Sacramento, CA. May 14, 2012—Email containing Excel file < logistic_parameters.xls> sent to Marin Greenwood, Aquatic Ecologist, ICF, Sacramento, CA.

Appendix 12A

There are not in-text citations or references for this appendix.

Appendix 12B

There are not in-text citations or references for this appendix.

Appendix 15A

California Natural Resources Agency. 2019. 2019 Statewide Crop Mapping GIS Shapefile. Available: https://data.cnra.ca.gov/dataset/statewide-crop-mapping/resource/1da7b37a-dd97-4b69-a86a-fe824a252eaf</a >.

National Agricultural Statistics Service. 2019a. 2017 Census of Agriculture: County Summary Highlights. April. Available: https://www.nass.usda.gov/Publications/AgCensus/2017/Full_Report/Volume_1,_Chapter_2_County_Level/California/st06_2_0008_0008.pdf</a >. Accessed: October 25, 2022.

National Agricultural Statistics Service. 2019b. 2017 Census of Agriculture: California State and County Data. Available: https://www.nass.usda.gov/Publications/AgCensus/2017/Full_Report/Census_by_State/California/index.php</a >

Natural Resources Conservation Service. 2013. Part 523 – Farmland Protection Policy Act Manual. U.S. Department of Agriculture. Available: https://www.nrcs.usda.gov/sites/default/files/2022-08/FPPA_Manual_Final_2013_0.pdf

Natural Resources Conservation Service 2022a. CroplandCROS 2017 data. Available: https://croplandcros.scinet.usda.gov/</a >.

Natural Resources Conservation Service. 2022b. CroplandCROS 2021 data. Available: https://croplandcros.scinet.usda.gov/</a >.

Appendix 15A1

There are not in-text citations or references for this appendix.

Appendix 15A2

There are not in-text citations or references for this appendix.

Appendix 17A

U.S. Department of the Interior, Bureau of Reclamation (Reclamation). 2015. Final Environmental Impact Statement for the Coordinated Long-term Operation of the Central Valley Project and the State Water Project, Appendix 8A: Power Model Documentation. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/FWA&FWAM/FWA_75.pdf</a >

Appendix 19A

California Department of Transportation. 2013. Technical Noise Supplement to the Traffic Noise Analysis Protocol for New Highway Construction, Reconstruction, and Retrofit Barrier Projects. May. Sacramento, CA https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_19A_NoiseDefinitionsNoiseCalculations/Caltrans_2013.%20Technical%20Noise%20Supplement%20to%20the%20Traffic%20Noise%20Analysis%20Protocol%20for%20New%20Highway%20Construction,%20Reconstruction,%20and%20Retrofit%20Barrier%20Projects.pdf</a >

Appendix 20A

Bay Area Air Quality Management District. 2018. Permit Handbook. San Francisco, CA. Available: https://www.baaqmd.gov/~/media/files/engineering/permit-handbook/baaqmd-permit-handbook.pdf?la=en</a >.

California Air Resources Board. 2020. California High GWP Gases Inventory for 2000-2018—by Category as Defined in the 2008 Scoping Plan. Last Revised: October 15, 2020. Available: https://ww3.arb.ca.gov/cc/inventory/data/tables/ghg_inventory_scopingplan_2000-18hgwp.pdf</a >.

California Energy Commission. 2019. 2018 Total System Electric Generation. Last Revised: June 24, 2019. Available: https://www.energy.ca.gov/data-reports/energy-almanac/california-electricity-data/2019-total-system-electric-generation/2018</a >.

California Irrigation Management Information System. 2021. CIMIS Hourly Report. Available: https://cimis.water.ca.gov/usercontrols/reports/hourlyreportviewer.aspx</a >.

Climate Registry. 2020. 2020 Default Emission Factors. Tables 2.1 and 2.7. Available:

Countess Environmental. 2006. WRAP Fugitive Dust Handbook. Tables 3-7, 6-6, 9-4 and page 9-8. Available: https://www.wrapair.org/forums/dejf/fdh/content/FDHandbook_Rev_06.pdf</a >.

Feather River Air Quality Management District. 2010. Indirect Source Review Guidelines. Available: https://www.fraqmd.org/files/8c3d336a1/FINAL+version+ISR+Amendments.pdf</a >.

Federal Office of Civil Aviation. 2015. Guidance on the Determination of Helicopter Emissions. Reference: COO.2207.111.2.2015750. December. Available: https://www.bazl.admin.ch/dam/bazl/de/dokumente/Fachleute/Regulationen_und_Grundlagen/guidance_on_the_determinationofhelicopteremissions.pdf.download.pdf/guidance_on_the_determinationofhelicopteremissions.pdf</a >.

ICF. 2021. Construction Modeling Output Files. July 2021. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_20A_MethodologyAirQualityGHGEmissionsCalculations/ICF_ConstructionModelingOutputFiles_July2021.pdf</a >

Marceau, M. L., M. A. Nisbet, and M. G. VanGeem. 2007. Life Cycle Inventory of Portland Cement Concrete. Tables E1b and G1b. PCA R&D Serial No. 3007. Portland Cement Association. Skokie, IL. Available: http://large.stanford.edu/courses/2016/ph240/pourshafeie2/docs/marceau-2007.pdf</a >

Trinity Consultants. 2017a. California Emissions Estimator Model Appendix D Default Data Tables. Tables 3.5, 4.1, and 9-2. Available: http://www.aqmd.gov/docs/default-source/caleemod/05_appendix-d2016-3-2.pdf?sfvrsn=4</a >.

Trinity Consultants. 2017b. California Emissions Estimator Model Appendix A Calculation Details for CalEEMod. Available: http://www.aqmd.gov/docs/default-source/caleemod/02_appendix-a2016-3-2.pdf?sfvrsn=6</a >.

U.S. Coast Guard. 2012. National Recreational Boating Survey. Available: https://www.uscgboating.org/library/recreational-boating-servey/USCG-2012-NRBS-Report.pdf</a >.

U.S. Environmental Protection Agency. 1995. Compilation of Air Pollutant Emission Factors. Section 13.3, Explosives Detonation. Available: https://www.epa.gov/sites/default/files/2020-10/documents/13.3_explosives_detonation.pdf</a >.

U.S. Environmental Protection Agency. 1998. Compilation of Air Pollutant Emission Factors. Section 11.9, Western Surface Coal Mining. Available: https://www3.epa.gov/ttn/chief/ap42/ch11/final/c11s09.pdf</a >.

U.S. Environmental Protection Agency. 2004a. Compilation of Air Pollutant Emission Factors. Section 11.19.2, Crushed Stone Processing and Pulverized Mineral Processing. Table 11.19.2-2. Available: https://www3.epa.gov/ttn/chief/ap42/ch11/final/c11s1902.pdf</a >.

U.S. Environmental Protection Agency. 2004b. Compilation of Air Pollutant Emission Factors. Section 11.1, Hot Mix Asphalt Plants. Available: https://www.epa.gov/sites/production/files/2020-10/documents/c11s01.pdf

U.S. Environmental Protection Agency. 2006a. Compilation of Air Pollutant Emission Factors. Section 13.2.2, Unpaved Roads. Tables 13.2.2-1 and 13.2.2-2. Available: https://www3.epa.gov/ttn/chief/ap42/ch13/final/c13s0202.pdf</a >.

U.S. Environmental Protection Agency. 2006b. Compilation of Air Pollutant Emission Factors. Section 13.2.4, Aggregate Handling and Storage Piles. Available: https://www3.epa.gov/ttn/chief/ap42/ch13/final/c13s0204.pdf</a >.

U.S. Environmental Protection Agency. 2006c. Compilation of Air Pollutant Emission Factors. Section 11.12, Concrete Batching. Available: https://www3.epa.gov/ttn/chief/ap42/ch11/final/c11s12.pdf</a >.

U.S. Environmental Protection Agency. 2011. Compilation of Air Pollutant Emission Factors. Section 13.2.1, Paved Roads. Table 13.2.1-1. Available: https://www3.epa.gov/ttn/chief/ap42/ch13/final/c13s0201.pdf</a >.

U.S. Environmental Protection Agency. 2021. Emissions & Generation Resource Integrated Database (eGRID). Last revised: February 23, 2021. Available: https://www.epa.gov/egrid</a >.

Western Regional Climate Center. 2012. Williams, California, Period of Record General Climate Summary – Precipitation. Available: https://wrcc.dri.edu/cgi-bin/cliMAIN.pl?ca9677</a >.

Appendix 20B

This appendix number and letter are not used in the Final EIR/EIS.

Appendix 20C

Applied Environmental Consultants. 2011. Revised AERMOD Modeling Report to Assess Ambient Air Quality Impacts. Accessed July 2021.

Attfield MD, Schleiff PL, Lubin JH, Blair A, Stewart PA, Vermeulen R, Coble JB, Silverman DT. 2012. The Diesel Exhaust in Miners Study: A Nested Case-Control Study of Lung Cancer and Diesel Exhaust. J Natl Cancer Inst. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_20C_AmbientAirQualityHealthRiskAnalysisTechReport/Attfield_etal_2012.%20The%20Diesel%20Exhaust%20in%20Miners%20Study%20A%20Nested%20Case-Control%20Study%20of%20Lung%20Cancer%20and%20Diesel%20Exhaust.pdf</a >

Benbrahim-Tallaa, L., R. Baan, Y. Grosse, B. Lauby-Secretan, F. E. Ghissassi, V. Bouvard, N. Guha, D. Loomis, and K. Straif. 2012. Carcinogenicity of Diesel-engine and Gasoline-engine Exhausts and Some Nitroarenes, Lancet Oncology. July 2012. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_20C_AmbientAirQualityHealthRiskAnalysisTechReport/Benbrahim-Tallaa_etal_2012_Carcinogenicity%20of%20Diesel-engine%20and%20Gasoline-engine%20Exhausts%20and%20Some%20Nitroarenes,%20Lancet%20Oncology.pdf</a >

California Air Pollution Control Officers Association. 2009. Health Risk Assessments for Proposed Land Use Projects.

California Air Resources Board. 2021. Hotspots Analysis Reporting Program 2 Air Dispersion Modeling and Risk Tool (Version 21081). https://ww3.arb.ca.gov/toxics/harp/harp.htm</a >.

———. 2016. California Ambient Air Quality Standards (CAAQS). https://ww2.arb.ca.gov/resources/california-ambient-air-quality-standards</a >.

———. 2015. Meteorological data for AERMOD. https://www.arb.ca.gov/toxics/harp/metfiles2.htm</a >.

———. 2005. Air Quality and Land Use Handbook: A Community Health Perspective. Available: https://sfmohcd.org/sites/default/files/20%20-%20CARB%2C%20Air%20Quality%20and%20Land%20Use%20Handbook%202005.pdf</a > .

California Department of Water Resources. 2021. California Irrigation Management Information System. https://cimis.water.ca.gov/Stations.aspx</a >.

Department of Ecology State of Washington. 2011. Technical Support Document for The Asphalt Plant (Portable and Stationary) General Order.

ICF. 2021. Construction Modeling Output Files. July 2021. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_20C_AmbientAirQualityHealthRiskAnalysisTechReport/ICF_ConstructionModelingOutputFiles_July2021.pdf</a >

International Agency for Research on Cancer. 2012 (June). Press Release No. 213. IARC: Diesel Engine Exhaust Carcinogenic. https://www3.paho.org/hq/index.php?option=com_content&view=article&id=6903:2012-iarc-diesel-engine-exhaust-carcinogenic&Itemid=0&lang=en#gsc.tab=0</a >

Lakes Environmental. 2012. AERMOD MPI. Accessed June 2021. https://www.weblakes.com/products/aermod/resources/Lakes_AERMOD_MPI_Getting_Started_V.8.0.pdf</a >.

Minnesota Pollution Control Agency. 2014. Technical Guidance: Filling Missing Ozone Data for OLM and PVMRM Applications. Available: https://www.pca.state.mn.us/sites/default/files/aq2-69.pdf</a >. Accessed: June 2021.

National Weather Service. 2021. Sacramento Weather Forecast Office. NOWData. Available: https://www.weather.gov/wrh/climate?wfo=sto</a >. Accessed: June 2021.

Office of Environmental Health Hazard Assessment. 2015 (February). Air Toxics Hot Spots Program Guidance Manual. Accessed June 2021. https://oehha.ca.gov/air/crnr/notice-adoption-air-toxics-hot-spots-program-guidance-manual-preparation-health-risk-0</a >.

Sacramento Metropolitan Air Quality Management District. 2020. Mobile Sources Air Toxics Protocol Guidance Document. 2020. V1.3. Accessed June 2021. http://www.airquality.org/LandUseTransportation/Documents/FinalMSATProtocolGuidancev1.3Sept2020.pdf</a >.

———. 2019. AERMOD Meteorological Data Files. Sacramento International Airport. Available: http://www.airquality.org/Residents/CEQA-Land-Use-Planning/CEQA-Guidance-Tools</a >. Accessed: June 2021.

———. 2018. Board-Adopted Methodology (Technical Appendix) for the Mobile Sources Air Toxics Protocol. V1.1. Accessed June 2021. http://www.airquality.org/LandUseTransportation/Documents/V1.1MSATProtocolMethodologyAppendixJuly2018.pdf</a >.

———. 2013. CEQA Guide. Dispersion Modeling of Construction-Generated PM10 Emissions. Revised July 2013. Accessed June 2021. http://airquality.org/LandUseTransportation/Documents/Ch3PMDispersionModelingGuidanceFINAL7-2013.pdf</a >.

San Joaquin Valley Air Pollution Control District. 2014. Policy for District Rule 2201 AAQA Modeling. Accessed June 2021. http://www.valleyair.org/policies_per/Policies/APR-1925.pdf</a >.

U.S. Environmental Protection Agency. 2022 (May). Air Quality Monitor Data. Accessed June 2021. https://www.epa.gov/outdoor-air-quality-data/interactive-map-air-quality-monitors</a >.

———. 2021a. National Ambient Air Quality Standards (NAAQS) Table. Accessed June 2021. https://www.epa.gov/criteria-air-pollutants/NAAQS-table</a >.

———. 2021b. AERMOD Modeling System. Accessed June 2021. https://www.epa.gov/scram/air-quality-dispersion-modeling-preferred-and-recommended-models</a >.

———. 2021c (April). AERMOD Implementation Guide. Accessed June 2021. https://gaftp.epa.gov/Air/aqmg/SCRAM/models/preferred/aermod/aermod_implementation_guide.pdf</a >.

———. 2021d (May). Air Quality Design Values. Accessed June 2021. https://www.epa.gov/air-trends/air-quality-design-values</a >.

———. 2020a. AERMOD Modeling System. Accessed June 2021. https://www.epa.gov/scram/air-quality-dispersion-modeling-preferred-and-recommended-models#aermod</a >

———. 2020b (February). User’s Guide for AERSURFACE Tool. Accessed June 2021. https://gaftp.epa.gov/Air/aqmg/SCRAM/models/related/aersurface/aersurface_ug_v20060.pdf</a >.

———. 2018a. Alternative Model Techniques to Address Two Issues with Modeling Buoyant Line Sources in AERMOD. Available: https://cfpub.epa.gov/oarweb/MCHISRS/index.cfm?fuseaction=main.resultdetails&recnum=18-IV-01</a >. Accessed: June 2021.

———. 2018b. Guidance on Significant Impact Levels for Ozone and Fine Particles in the Prevention of Significant Deterioration Permitting Program. Accessed. June 2021. https://www.epa.gov/sites/production/files/2018-04/documents/sils_guidance_2018.pdf</a >.

———. 2017. Guideline on Air Quality Models (Revised). 40 Code of Federal Regulations, Part 51, Appendix W. Office of Air Quality Planning and Standards. January 2017. Accessed June 2021. https://www.epa.gov/scram/2017-appendix-w-final-rule</a >.

———. 2015. Clarification on the Use of AERMOD Dispersion Modeling for Demonstrating Compliance with NO2 National Ambient Air Quality Standard. Accessed July 2021. https://www.epa.gov/sites/production/files/2020-10/documents/no2_clarification_memo-20140930.pdf</a >.

———. 2011. Additional Clarification Regarding Application of Appendix W Modeling Guidance for the 1-hour NO2 National Ambient Air Quality Standard. Accessed July 2021. https://www.epa.gov/sites/production/files/2020-10/documents/additional_clarifications_appendixw_hourly-no2-naaqs_final_03-01-2011.pdf</a >.

———. 2010. Applicability of Appendix W Modeling Guidance for the 1-hour NO2 National Ambient Air Quality Standard. Available: https://www.epa.gov/sites/default/files/2020-10/documents/clarificationmemo_appendixw_hourly-no2-naaqs_final_06-28-2010.pdf</a >.

U.S. Department of Agriculture. 2021. Pinto Valley Mine Final Environmental Impacts Statement.. http://www.pintovalleymineeis.us/documents.html</a >.

U.S. Geological Society. 2021. Multi-Resolution Land Characteristics Consortium. https://www.mrlc.gov/viewer/</a >.

Zhu, Y., W. C. Hinds, S. Kim, and C. Sioutas. 2002. Study of Ultra-Fine Particles Near a Major Highway with Heavy-Duty Diesel Traffic. Atmospheric Environment 36:4323–4335. Available: https://cfpub.epa.gov/si/si_public_record_report.cfm?Lab=NCER&dirEntryId=83813</a >.

Appendix 20C1

U.S. Environmental Protection Agency. 2021 (May). Model Change Bulletin (MCB) 15. AERMOD version 21112. https://gaftp.epa.gov/Air/aqmg/SCRAM/models/preferred/aermod/aermod_mcb15_v21112.pdf

Appendix 20C2

There are not in-text citations or references for this appendix.

Appendix 20C3

There are not in-text citations or references for this appendix.

Appendix 20D

California Air Resources Board. 2021. CEPAM: 2016 SIP – Standard Emission Tool. Available: https://ww2.arb.ca.gov/applications/cepam2019v103-standard-emission-tool</a >.

Ramboll. 2021. Comprehensive Air Quality Model with Extensions (CAMx). Available: https://www.camx.com/</a >.

Sacramento Metropolitan Air Quality Management District. 2020. Guidance to Address the Friant Ranch Ruling for CEQA Projects in the Sac Metro Air District. Available: https://www.airquality.org/LandUseTransportation/Documents/SMAQMDFriantRanchFinalOct2020.pdf</a >.

U.S. Environmental Protection Agency. 2022. BenMAP Environmental Benefits Mapping and Analysis Program – Community Edition User’s Manual. Available: https://www.epa.gov/sites/default/files/2015-04/documents/benmap-ce_user_manual_march_2015.pdf</a >.

_________. 2021a. Environmental Benefits Mapping and Analysis Program – Community Edition (BenMAP-CE). Available: https://www.epa.gov/benmap</a >.

_________. 2021b. BenMAP Community Edition – PopGrid Program. Available: https://www.epa.gov/benmap/benmap-community-edition</a >.

_________. 2021c. AirData Air Quality Monitors Interactive Map. Available: https://epa.maps.arcgis.com/apps/webappviewer/index.html?id=5f239fd3e72f424f98ef3d5def547eb5&extent=-146.2334,13.1913,-46.3896,56.5319</a >.

_________. 2018. Modeling Guidance for Demonstrating Air Quality Goals for Ozone, PM2.5 and Regional Haze. November 2018. Available: https://www.epa.gov/sites/default/files/2020-10/documents/o3-pm-rh-modeling_guidance-2018.pdf</a >.

_________. 2017a. Guideline on Air Quality Models (Revised). 40 Code of Federal Regulations, Part 51, Appendix W. Office of Air Quality Planning and Standards. January 2017. Available: https://www.epa.gov/sites/default/files/2020-09/documents/appw_17.pdf</a >.

________. 2017b. Use of Photochemical Grid Models for Single-Source Ozone and Secondary PM2.5 impacts for Permit Program Related Assessments and for NAAQS Attainment Demonstrations for Ozone, PM2.5 and Regional Haze. August 2017. Available: https://www.epa.gov/sites/default/files/2020-10/documents/20170804-photochemical_grid_model_clarification_memo.pdf</a >.

_________. 2008. Final Ozone NAAQS Regulatory Impact Analysis. EPA-452/R-08-003. March 2008. Available: https://www.epa.gov/sites/default/files/2020-07/documents/naaqs-o3_ria_final_2008-03.pdf</a >.

Appendix 21A

Deshmukh, C., F. Guérin, A. Vongkhamsao, S. Pighini, P. Oudone, S. Sopraseuth, A. Godon, W. Rode, P. Guédant, P. Oliva, S. Audry, C. Zouiten, C. Galy-Lacaux, H. Robain, O. Ribolzi, A. Kansal, V. Chanudet, S. Descloux, and D. Serça. 2018. Carbon Dioxide Emissions from the Flat Bottom and Shallow Nam Theun 2 Reservoir: Drawdown Area as a Neglected Pathway to the Atmosphere. Biogeosciences 15:1775–1794 https://bg.copernicus.org/articles/15/1775/2018/</a >

Intergovernmental Panel on Climate Change. 2019. 2019 Refinement to the 2006 IPCC Guidelines for National Greenhouse Gas Inventories. Volume 4. Available: https://www.ipcc-nggip.iges.or.jp/public/2019rf/vol4.html</a >.

Prairie, Y., J. Alm, J. Beaulieu, N. Barros, T. Battin, J. Cole, P. del Giorgio, T. DelSontro, F. Guérin, A. Harby, J. Harrison, S. Mercier-Blais, D. Serça, S. Sobek, and D. Vachon. 2018. Greenhouse Gas Emissions from Freshwater Reservoirs: What Does the Atmosphere See?. EPA Author Manuscript. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6309167/</a >

U.S. Environmental Protection Agency. 2022. Inventory of U.S. Greenhouse Gas Emissions and Sinks 1990–2020. Available: https://www.epa.gov/ghgemissions/inventory-us-greenhouse-gas-emissions-and-sinks-1990-2020</a >.

Yang, L., F. Lu, X. Wang, X. Duan, W. Song, B. Sun, S. Chen, Q. Zhang, P. Hou, F. Zheng, Y. Zhang, X. Zhou, Y. Zhou, and Z. Ouyang. 2012. Surface Methane Emissions from Different Land Use Types During Various Water Levels in Three Major Drawdown Areas of the Three Gorges Reservoir. Journal of Geophysical Research: Atmospheres 117. https://agupubs.onlinelibrary.wiley.com/doi/pdf/10.1029/2011JD017362</a >

Yang, L., F. Lu, X. Wang, X. Duan, B. Sun, X. Zhou. 2014. Progress in the studies on the greenhouse gas emissions from reservoirs. Acta Ecologica Sinica. Volume 34, Issue 4. Available: https://www.sciencedirect.com/science/article/pii/S1872203214000249?via%3Dihub</a >.

Appendix 22A

White, G.G., et. al. 2009. Archaeological Overview, Inventory Report, and Research Design, Proposed Sites Reservoir APE, Colusa and Glenn Counties, California. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_22A_CulturalResources/White,%20G.G.%20et%20al%202009%20-%20Arch%20Overview.pdf</a >

Appendix 24A

There are not in-text citations or references for this chapter.

Appendix 24B

Colusa County. 2011. Public Draft Environmental Impact Report for the 2030 Colusa County General Plan Update. November. Colusa County, CA. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_24B_RegionalProjectLandscapeDescription/Colusa%20County_2011.%20Public%20Draft%20Environmental%20Impact%20Report%20for%20the%202030%20Colusa%20County%20General%20Plan%20Update.pdf</a >

Glenn County. 1993. Glen County General Plan, Policy Plan. Adopted. June 15, 1993. Glenn County, CA. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_24B_RegionalProjectLandscapeDescription/GlennCounty_1993_EIR%20Glenn%20County%20General%20Plan%20Volume%20IV.pdf</a >

Yolo County. 2009. 2030 Countywide General Plan. Planning and Public Works Department. Adopted: November 10, 2009. Woodland, CA. https://sitesreservoirproject.riptideweb.com/references/REF21/Appx_04A_RegulatoryRequirements/Yolo%20County_2009_2030%20Countywide%20General%20Plan.pdf</a >

Appendix 27A

There are not in-text citations or references for this appendix.

Appendix 28A

California Department of Water Resources Climate Change Technical Advisory Group (DWR CCTAG). 2015. Perspectives and guidance for climate change analysis. California Department of Water Resources Technical Information Record. p. 142. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App28A_Climate_Change/DWR_CCTAG_2015.pdf</a >

California Department of Water Resources (DWR). 2020. Final Environmental Impact Report for Long-Term Operation of the California State Water Project. March 2020. https://data.cnra.ca.gov/dataset/dcr2017/resource/be3e5c05-e4d2-450e-8f61-b55cc7a71301</a >

California Ocean Protection Council (OPC) 2018. State of California Sea-Level Rise Guidance: 2018 Update. March 2018. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App28A_Climate_Change/OPC_2018_SeaLevelRiseGuidance.pdf</a >

California Water Commission (CWC). 2016. Water Storage Investment Program: Technical Reference. November 2016. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App28A_Climate_Change/CWC_2016_WSIP_TRD.pdf</a >

Daly, C., R.P. Neilson, D.L. Phillips. 1994. “A Statistical-Topographic Model for Mapping Climatological Precipitation over Mountainous Terrain.” Journal of Applied Meteorology. Vol. 33, 140-158. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App28A_Climate_Change/Daly_et_al_1994_MappingPrecipitation.pdf</a >

Intergovernmental Panel on Climate Change (IPCC). 2013. Climate Change 2013: The Physical Science Basis. Contribution of Working Group I to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change. T.F. Stocker, D. Qin, G.-K. Plattner, M. Tignor, S.K. Allen, J. Boschung, A. Nauels, Y. Xia, V. Bex, and P.M. Midgley, eds. Cambridge, United Kingdom and New York, New York: Cambridge University Press. p. 1535. https://www.ipcc.ch/report/ar5/wg1/</a >

Liang, X., D.P. Lettenmaier, E.F. Wood, and S.J. Burges. 1994. “A Simple Hydrologically Based Model of Land Surface Water and Energy Fluxes for General Circulation Models.”Journal of Geophysical Research. Vol. 99, 14415–14428. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App28A_Climate_Change/Liang_etal_1994_HydrologicModel.pdf</a >

Liang, X., D.P. Lettenmaier, and E.F. Wood. 1996. Surface Soil Moisture Parameterization of the VIC-2L Model: Evaluation and Modification. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App28A_Climate_Change/Liang_etal_1996_SoilMoisture.pdf</a >

Livneh, B., E. A. Rosenberg, C. Lin, V. Mishra, K. Andreadis, E. P. Maurer, and D.P. Lettenmaier. 2013. “A long-term hydrologically based data set of land surface fluxes and states for the conterminous U.S.: Update and extensions.” Journal of Climate. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App28A_Climate_Change/Livneh_etal_2013_LandSurfaceFluxes.pdf</a >

Nijssen, B., D.P. Lettenmaier, X. Liang, S. W. Wetzel, and E.F. Wood. 1997. “Streamflow simulation for continental-scale river basins.” Water Resour. Res. 33, 711-724. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App28A_Climate_Change/Nijssen_et_al_1997_StreamflowSimulations.pdf</a >

Pierce, David W., Daniel R. Cayan, and Bridget L. Thrasher. 2014. “Statistical Downscaling Using Localized Constructed Analogs (LOCA).” J. Hydrometeor. 15, 2558–2585. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%202/App28A_Climate_Change/Pierce_etal_LOCA_2014_LOCA.pdf</a >

Appendix 30A

Sites Project Authority. 2017. Water Storage Investment Program Application & Appeal Documentation. Attachment 1: Model Assumptions. Final. August.

Sites Project Authority. 2017. Water Storage Investment Program Applications & Appeal Documentation. Attachment 1: Model Assumptions. Final. August.

Appendix 30B

There are not in-text citations or references for this appendix.

Appendix 33A

There are not in-text citations or references for this appendix.

Appendix 33B

There are not in-text citations or references for this appendix.

Appendix 33C

There are not in-text citations or references for this appendix.

Volume 3

Chapter 01

There are not in-text citations or references for this document.

Chapter 02

There are not in-text citations or references for this document.

Chapter 03

There are not in-text citations or references for this document.

Chapter 04

Bass, R., K. Bogdan, and T. Rivasplata. 2012. CEQA Deskbook. Third Edition. Point Arena, CA: Solano Press Books. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%203/Ch04_ResponsesToComments/Bass%20et%20al_2012_CEQA%20Deskbook%20(3rd%20Ed).pdf</a >

Bellido-Leiva, F., R. A. Lusardi, and J. R. Lund. 2021. Modeling the Effect of Habitat Availability and Quality on Endangered Winter-Run Chinook Salmon (Oncorhynchus tshawytscha) Production in the Sacramento Valley. Ecological Modelling 447. https://www.sciencedirect.com/science/article/abs/pii/S030438002100082X</a >

Berg, M., and M. Sutula. 2015. Factors Affecting Growth of Cyanobacteria with Special Emphasis on the Sacramento-San Joaquin Delta. August. Prepared for: The Central Valley Regional Water Quality Control Board and The California Environmental Protection Agency State Water Resources Control Board. Technical Report 869. Available: https://amarine.com/wp-content/uploads/2018/01/Cyano_Review_Final.pdf</a >.

Bilski, R., and J. Kindopp. 2009. Emigration of Juvenile Chinook Salmon (Oncorhynchus tshawytscha) in the Feather River, 2005–2007. State of California Department of Water Resources, Division of Environmental Services. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%203/Ch04_ResponsesToComments/Bilski%20and%20Kindopp_2009_Emigration%20of%20Juvenile%20Chinook%20Salmon_2005-2007.pdf</a >

Bratovich, P., J. Weaver, C. Addley, and C. Hammersmark. 2017. Lower American River. Biological Rationale, Development and Performance of the Modified Flow Management Standard. Exhibit ARWA-702. Prepared for Water Forum. Sacramento, CA. https://waterforum.org/wp-content/uploads/2017/12/ARWA-702-Biological-Rationale-Development-and-Performance-of-the-Modified-Flow-Management-Standard-00023990xE2E14.pdf</a >

Bulger, J. B., N. J. Scott Jr., and R. B. Seymour. 2003. Terrestrial Activity and Conservation of Adult California Red-Legged Frogs Rana aurora draytonii in Coastal Forests and Grasslands. Biological Conservation 110:85–95. https://www.sciencedirect.com/science/article/abs/pii/S0006320702001799</a >

Bureau of Reclamation. 2000. Record of Decision, Trinity River Mainstem Fishery Restoration Final Environmental Impact Statement/Environmental Impact Report. U.S. Department of Interior, Wasshington D.C. Available: https://www.trrp.net/library/document/?id=227. Accessed: October 17, 2020. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/PCFFA&IGFR/part2/pcffa_98.pdf</a >

Bureau of Reclamation. 2013. Fish and Wildlife Coordination Act Report Appendix: Shasta Lake Water Resources Investigation, California. Draft. June. Prepared by U.S. Department of the Interior, Bureau of Reclamation, Mid-Pacific Region. Available: https://www.usbr.gov/mp/nepa/includes/documentShow.php?Doc_ID=14138</a >.

Bureau of Reclamation. 2019a. Final Environmental Impact Statement for Reinitiation of Consultation on the Coordinated Long-Term Operation of the Central Valley Project and State Water Project. December. Sacramento, CA. Available: https://www.usbr.gov/mp/nepa/includes/documentShow.php?Doc_ID=41664</a >. Accessed: August 26, 2021.

Bureau of Reclamation. 2019b. Reinitiation of Consultation on the Coordinated Long-Term Operation of the Central Valley Project and State Water Project. Final Biological Assessment. January. Mid-Pacific Region, Bureau of Reclamation. https://www.usbr.gov/mp/bdo/docs/ba-final-biological-assessment.pdf</a >

Bureau of Reclamation and Tehama-Colusa Canal Authority. 2022. Initial Study/Environmental Assessment, 2022 Tehama-Colusa Canal Authority In-Basin Water Transfers California. CGB-EA-2022-011. Available: https://files.ceqanet.opr.ca.gov/276019-1/attachment/_qqpFbRUREtzkX2DLNGokgPcLiTXxSq4UMXiGNGywM0JBbADw1Jn7hQN5wdJE9JG80aefdIyHzmA8cTv0</a >. Accessed: April 14, 2022.

California Department of Fish and Game. 1994. Staff Report Regarding Mitigation for Impacts to Swainson’s Hawk (Buteo swainsoni) in the Central Valley of California. Sacramento, CA. November 8. https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&cad=rja&uact=8&ved=2ahUKEwjuxueEmKuBAxUcJ0QIHYK1CTcQFnoECB0QAQ&url=https%3A%2F%2Fnrm.dfg.ca.gov%2FFileHandler.ashx%3FDocumentID%3D83992&usg=AOvVaw2ld3qbJMfwUX0q73pfqeU5&opi=89978449</a >

California Department of Fish and Game. 2003. Fisheries Studies at Stony Creek, Thomes Creek, Sites Newville Projects, and Colusa Basin Drain Report. California Department of Fish and Game, Central Valley Bay-Delta Branch.

California Department of Fish and Game. 2008. Yolo Bypass Wildlife Area Land Management Plan. June 2008. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=84924&inline</a >. Accessed: July 18, 2022.

California Department of Fish and Wildlife. 2020. Incidental Take Permit for Long-term Operation of the State Water Project in the Sacramento-San Joaquin Delta (2081-2019-066-00). March. https://water.ca.gov/-/media/DWR-Website/Web-Pages/Programs/State-Water-Project/Files/ITP-for-Long-Term-SWP-Operations.pdf</a >

California Department of Fish and Wildlife. 2021. Fall Midwater Trawl Survey End of Season Report: 2020. July 28. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentId=193627&inline</a >.

California Department of Fish and Wildlife. 2022. Fall Midwater Trawl Survey End of Season Report: 2021. February 8. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentId=199043</a >.

California Department of Water Resources. 2003a. California’s Groundwater. Bulletin 118–Update 2003. October. Available: https://data.cnra.ca.gov/dataset/75eb6072-6810-471d-ba73-d8eadec36564/resource/5fc7e39c-34e7-433e-9dbe-ff93ce76787f/download/bulletin_118_update_2003.pdf</a >.

California Department of Water Resources. 2003b. Geologic Feasibility Report, Sites Reservoir Project, Project Geology Report No. 94-30-02. Division of Engineering. July. Sacramento, CA. https://sitesproject.org/wp-content/uploads/2018/09/Geologic-Feasibility-Report-Sites-Reservoir-Project.pdf</a >

California Department of Water Resources. 2006. California’s Groundwater Bulletin 118 Sacramento Valley Groundwater Basin, Colusa Subbasin. Last update January 1, 2006. Available: https://data.cnra.ca.gov/dataset/12e534ff-f604-4ba9-82db-486d81e082ff/resource/8d756bd0-77f5-4602-9758-d0e7f0180131/download/b118_2003_basindescription_5_021_52.pdf</a >.

California Department of Water Resources. 2007. NODOS GW Quality Study Data. Unpublished Raw Water Quality Data. Northern Region Office. Red Bluff, CA.

California Department of Water Resources. 2020a. Final Environmental Impact Report for Long-Term Operations of the California State Water Project, Part III, Revisions to the DEIR. State Clearinghouse No. 2019049121. Available: https://water.ca.gov/News/Public-Notices/2020/March-2020/Final-EIR-for-SWP-Operations</a >.

California Department of Water Resources. 2020b. Sustainable Groundwater Management Act (SGMA) Basin Prioritization Data. Colusa, Red Bluff, and Yolo subbasins. Available: https://data.cnra.ca.gov/dataset/sgma-basin-prioritization</a >.

California Department of Water Resources. 2022. I02 Natural Communities Commonly Associated with Groundwater Vegetation. Last updated: July 15, 2022. Available: https://data.cnra.ca.gov/dataset/i02-nccag-vegetation</a >.

California Department of Water Resources, Northern Regional Office. 2020. Northern Sacramento Valley Dedicated Monitoring Well Groundwater Quality Assessment. January.

California North Coast Regional Water Quality Control Board. 2022. Benthic Cyanobacteria and Cyanotoxin Monitoring in Northern California Rivers, 2016–2019. January. Freshwater Harmful Algal Bloom (FHAB) Monitoring and Response Program. Available: https://www.waterboards.ca.gov/northcoast/water_issues/programs/swamp/pdf/20220208_Final_North_Coast_Benthic_Cyano_Report_2016-2019_ADA.pdf</a >.

California Water Boards. 2020. Groundwater Ambient Monitoring and Assessment Program. Groundwater Information System. Colusa, Red Bluff and Yolo Subbasins. Available: https://gamagroundwater.waterboards.ca.gov/gama/gamamap/public/</a >.

California Water Commission. 2021. Water Storage Investment Program: Sites Reservoir Project Continuing Eligibility and Feasibility Determination (Action Item). December 15. Available: https://cwc.ca.gov/-/media/CWC-Website/Files/Documents/2021/12_December/December2021_Item_10_SitesFeasibility_Final.pdf</a >.

Central Valley Regional Water Quality Control Board. 2010. Sacramento–San Joaquin Delta Estuary TMDL for Methylmercury. Final Staff Report. April. Prepared by Wood, M., C. Foe, J. Cooke, and L. Stephen. Available: https://www.waterboards.ca.gov/rwqcb5/water_issues/tmdl/central_valley_projects/delta_hg/archived_delta_hg_info/april_2010_hg_tmdl_hearing/apr2010_tmdl_staffrpt_final.pdf</a >.

Central Valley Regional Water Quality Control Board. 2018. The Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board, Central Valley Region: The Sacramento River Basin and the San Joaquin River Basin. Fifth Edition. Revised May 2018. Available: https://www.waterboards.ca.gov/rwqcb5/water_issues/basin_plans/sacsjr_201902.pdf</a >.

Central Valley Regional Water Quality Control Board. 2022. 2020-2022 303(d) List. Excel file (includes potential sources) Final Revised Appendix A of the Final Staff Report for the 2020–2022 Integrated Report for Clean Water Act 303(d) List and 305(b) Report. Available: https://www.waterboards.ca.gov/water_issues/programs/water_quality_assessment/2020_2022_integrated_report.html</a >.

CH2MHill. 2014. Arsenic in Groundwater, Soil, and Surface Water in Rice-Growing Areas of the Sacramento Valley. Draft memo prepared for the California Rice Research Board. Prepared by E. Thatcher, L. Porta, and S. Bundy. Project number 479532. January 23. Available: http://www.carrb.com/13rpt/2013Bundy-RP-15.pdf</a >.

Chorus, I., and M. Welker. 2021. Toxic Cyanobacteria in Water. Second Edition. Boca Raton, FL: CRC Press.

Colusa Local Agency Formation Commission. 2017. Maxwell Public Utility District (MPUD) Municipal Service Review (MSR) Sphere of Influence (SOI). Hearing Draft. September. Available: http://www.colusalafco.org/uploads/1/1/4/5/11454087/hearing_draftmaxwell_pud_msr-soi_9.7.17.pdf</a >.

Council on Environmental Quality. 2016. Final Guidance for Federal Departments and Agencies on Consideration of Greenhouse Gas Emissions and the Effects of Climate Change in National Environmental Policy Act Reviews. (Withdrawn in April 2017, and then new draft guidance was issued in June 2019.) https://ceq.doe.gov/docs/ceq-regulations-and-guidance/nepa_final_ghg_guidance.pdf</a >

Davids Engineering, Inc., ERA Economics, West Yost, Woodard & Curran, Inc., and California State University, Sacramento. 2021. Colusa Subbasin Groundwater Sustainability Plan. Prepared for Colusa and Glenn Groundwater Authorities. Available: https://colusagroundwater.org/projects/groundwater-sustainability-plan/</a >.

Davids Engineering, Inc. and West Yost. 2022. Colusa Subbasin Groundwater Sustainability Plan, Annual Report. April. Prepared for Colusa and Glenn Groundwater Authorities. Available: https://sgma.water.ca.gov/portal/gspar/preview/135</a >.

del Rosario, R. B., Y. J. Redler, K. Newman, P. L. Brandes, T. Sommer, K. Reece, and R. Vincik. 2013. Migration Patterns of Juvenile Winter-Run-Sized Chinook Salmon (Oncorhynchus tshawytscha) Through the Sacramento–San Joaquin Delta. San Franciso Estuary and Watershed Science 11(1):24. https://escholarship.org/uc/item/36d88128

Delta Stewardship Council. 2019. Delta Plan Executive Summary. Available: https://deltacouncil.ca.gov/pdf/delta-plan/2019-01-02-amended-executive-summary.pdf</a >.

ECORP Consulting, Inc. 2005a. Vernal Pool Mitigation and Monitoring Plan for the Fiddyment 44 Project. September. Prepared for Conservation Resources. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%203/Ch04_ResponsesToComments/ECORP_2005_Vernal%20Pool%20MMP_Fiddyment%2044%20Project.pdf</a >

ECORP Consulting, Inc. 2005b. Westpark/Fiddyment Ranch Off-Site Vernal Pool Restoration and Monitoring Plan. February. Prepared for Conservation Resources. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%203/Ch04_ResponsesToComments/ECORP_2005_Westpark%20Fiddyment%20Ranch%20Off-Site%20Vernal%20Pool%20RMP.pdf</a >

ESSA Technologies Ltd. 2008. Appendix F: SacEFT Analyses Results. March. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=5038</a >.

Fahey, M. 2012. Colusa Basin Watershed Management Plan. December. Prepared by the Colusa County Resource Conservation District. https://data.sacriver.org/assets/06942155460a79991fdf1b57f641b1b4/application/pdf/Colusa_Basin_Watershed_Management_Plan_2012.pdf</a >

Federal Energy Regulatory Commission. 2023a. Sites Project Authority Docket No. CD23-5-000. Notice of Preliminary Determination of a Qualifying Conduit Hydropower Facility and Soliciting Comments and Motions to Intervene (March 8, 2023). https://public-inspection.federalregister.gov/2023-05162.pdf</a >

Federal Energy Regulatory Commission. 2023b. Sites Project Authority Docket No. CD23-6-000. Notice of Preliminary Determination of a Qualifying Conduit Hydropower Facility and Soliciting Comments and Motions to Intervene (March 8, 2023). https://www.federalregister.gov/documents/2023/03/14/2023-05161/sites-project-authority-notice-of-preliminary-determination-of-a-qualifying-conduit-hydropower</a >

Ferriz, H. 2001. Groundwater Resources of Northern California: An Overview. Engineering Geology Practice in Northern California, Division of Mines and Geology, Bulletin 210. Pages 19–48. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%203/Ch04_ResponsesToComments/Ferriz_2001_Groundwater%20Resources%20of%20NorCal.pdf</a >

Ford, D., L. Grober, T. Harmon, J. R. Lund (Chair), and D. McKinney. 2006. Review Panel Report: San Joaquin River Valley CalSim II Model Review. January. CALFED Science Program—California Water and Environmental Modeling Forum. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/wq_control_plans/2006wqcp/exhibits/append2/sjrg/sjrg-47.pdf</a >.

Gilbreath, A., L. Mckee, I. Shimabuku, D. Lin, L. M. Werbowski, X. Zhu, J. Grbic, and C. Rochman. 2019. Multiyear Water Quality Performance and Mass Accumulation of PCBs, Mercury, Methylmercury, Copper, and Microplastics in a Bioretention Rain Garden. J. Sustainable Built Environment 5(4):04019004-1–04019004-9. Available: https://www.researchgate.net/publication/335753462_Multiyear_Water_Quality_Performance_and_Mass_Accumulation_of_PCBs_Mercury_Methylmercury_Copper_and_Microplastics_in_a_Bioretention_Rain_Garden#fullTextFileContent</a >.

Gill, S., and M. Tompkins. 2020. Feather River. Available: http://cvpia-habitat-docs-markdown.s3-website-us-west-2.amazonaws.com/watershed/feather_river.html</a >.

Glenn County, Planning and Public Works Agency. 2012. Instructions for Filing Application for General Plan Amendment. Available: https://www.countyofglenn.net/sites/default/files/Planning/GPA.pdf</a >.

Gray, A. B., and G. B. Pasternack. 2016. Colusa Basin Drainage Area Fluvial Sediments: Dynamics, Environmental Impacts and Recommendations for Future Monitoring of The Colusa Basin Suspended Sediment Project. SWAMP-MR-RB5-2016-0002. Prepared for Central Valley Regional Water Quality Control Board, Sacramento, CA. Available: https://www.waterboards.ca.gov/water_issues/programs/swamp/docs/reglrpts/r5_cbds_reg_mar2016.pdf</a >.

Groundwater Resource Hub. 2021. Mapping Indicators of GDEs, NC Dataset Update. Last updated: April 2021. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%203/Ch04_ResponsesToComments/Groundwater%20Resource%20Hub_2021_Mapping%20Indicators%20of%20GDEs.pdf</a >

Heublein, J. C., R. J. Bellmer, R. D. Chase, P. Doukakis, M. Gingras, D. Hampton, J. A. Israel, Z. J. Jackson, R. C. Johnson, O. P. Langness, and S. Luis. 2017. Life History and Current Monitoring Inventory of San Francisco Estuary Sturgeon. U.S. Department of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service, Southwest Fisheries Science Center. https://repository.library.noaa.gov/view/noaa/15998</a >

Holland, D. C. 1994. The Western Pond Turtle: Habitat and History. Final Report. DOE/BP-62137-1. Portland, OR: Bonneville Power Administration, U.S. Department of Energy, and Wildlife Diversity Program, Oregon Department of Fish and Wildlife. https://www.osti.gov/biblio/171287</a >

Incorporated Research Institutions for Seismology. 2011. How Often Do Earthquakes Occur? Factsheet No. 3. Available: https://www.iris.edu/hq/inclass/fact-sheet/how_often_do_earthquakes_occur</a >.

Interagency Ecological Program, C. Pien, J. Adams, and N. Kwan. 2021. Interagency Ecological Program: Zooplankton Catch and Water Quality Data from the Sacramento River Floodplain and Tidal Slough, Collected by the Yolo Bypass Fish Monitoring Program, 1998–2018 ver 2. Environmental Data Initiative. Available: https://doi.org/10.6073/pasta/baad532af96cba1d58d43b89c08ca081</a >.

Jones, D. 2016. Trophic Transfer of a Naturally Occurring Algal Toxin from a Freshwater Lake to Little Brown Bats. Masters Thesis. Grand Valley State University, Allendale, MI. Available: http://scholarworks.gvsu.edu/theses/816</a >.

Katz, J. V., C. Jeffres, J. L. Conrad, T. R. Sommer, J. Martinez, S. Brumbaugh, N. Corline, and P. B. Moyle. 2017. Floodplain Farm Fields Provide Novel Rearing Habitat for Chinook Salmon. PLOS ONE. Available: http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0177409</a >.

Keeley, J. E., and P. H. Zedler. 1998. Characterization and Global Distribution of Vernal Pools. In C. W. Witham, E. T. Bauder, D. Belk, W. R. Ferrin, Jr., and R. Orduff (eds.), Ecology, Conservation, and Management of Vernal Pool Ecosystems—Proceedings from a 1996 Conference. Sacramento, CA: California Native Plant Society. https://www.researchgate.net/publication/228704721_Characterization_and_global_distribution_of_vernal_pools</a >

Kratville, D. 2010. California Department of Fish and Game Rationale for Effects of Exports. California Department of Fish and Game, Sacramento, CA. https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&cad=rja&uact=8&ved=2ahUKEwjh_ZGxpquBAxViDkQIHVNYDg0QFnoECBUQAQ&url=https%3A%2F%2Fnrm.dfg.ca.gov%2FFileHandler.ashx%3FDocumentID%3D40845&usg=AOvVaw2gDREa_keO5k_LfhYRbSmC&opi=89978449</a >

Lee, J. W., N. De Riu, S. Lee, S. C. Bai, G. Moniello, and S. S. Hung. 2011. Effects of Dietary Methylmercury on Growth Performance and Tissue Burden in Juvenile Green (Acipenser medirostris) and White Sturgeon (A. transmontanus). Aquat Toxicol. 105(3–4):227–234. doi: 10.1016/j.aquatox.2011.06.013. https://pubmed.ncbi.nlm.nih.gov/21763234/</a >

Lehman, P., K. Marr, G. L. Boyer, S. Acuna, and S. J. Teh. 2013. Long-Term Trends and Causal Factors Associated with Microcystis Abundance and Toxicity in San Francisco Estuary and Implications for Climate Change Impacts. Hydrobiologica 718:141–158. https://www.researchgate.net/profile/P-Lehman/publication/258162923_Long-term_trends_and_causal_factors_associated_with_Microcystis_abundance_and_toxicity_in_San_Francisco_Estuary_and_implications_for_climate_change_impacts/links/00b4952a0b9e2b3f4c000000/Long-term-trends-and-causal-factors-associated-with-Microcystis-abundance-and-toxicity-in-San-Francisco-Estuary-and-implications-for-climate-change-impacts.pdf</a >

Lovich, J., and K. Meyer. 2002. The Western Pond Turtle (Clemmys marmorata) in the Mojave River, California, USA: Highly Adapted Survivor or Tenuous Relict? Journal of Zoology London 256:537–545. http://www.elkhornsloughctp.org/uploads/files/1242847879Scott,Rathbun%20etal%2008%20(turtle)%20HerpConserBiol.pdf</a >

Martin, B. T., A. Pike, S. N. John, N. Hamda, J. Roberts, S. T. Lindley, and E. M. Danner. 2017. Phenomenological vs. Biophysical Models of Thermal Stress in Aquatic Eggs. Ecology Letters 20:50–59 https://salmon-net.org/project/martin-et-al-2016-phenomenological-vs-biophysical-models-of-thermal-stress-in-aquatic-eggs/</a >

Maxwell Unified School District. 2019. Local Control Accountability Plan and Annual Update Template. Available: https://www.maxwellusd.net/documents/LCFFLCAP/2019-2020-Local-Control-Accountability-Plan-LCAP.pdf</a >

Maxwell Unified School District. 2020. 2021–2022 School Calendar Draft B. Board adopted: December 14, 2020. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%203/Ch04_ResponsesToComments/Maxwell%20School%20District_2020_2021%E2%80%932022%20School%20Calendar%20Draft%20B.pdf</a >

Maxwell Unified School District. 2021. 2022–2023 School Calendar. Board adopted: December 13, 2021. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%203/Ch04_ResponsesToComments/Maxwell%20School%20District_2021_2022%E2%80%932023%20School%20Calendar.pdf</a >

MBK Engineers. 2022. Development of Funks Creek and Stone Corral Creek Streamflow Estimate. Technical Memorandum. August 16. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%203/Ch04_ResponsesToComments/MBK_2022_Tech%20Memo_Funks%20and%20Stone%20Corral%20Streamflow%20Estimate.pdf</a >

McDowell, F., D. Lehman, P. Gucwa, D. Fritz, and J. Maxwell. 1984. Glaucophane Schists and Ophiolites of the Northern California Coast Ranges; Isotopic Ages and Their Tectonic Implications. Geological Society of America Bulletin 95(11):1373–1382. Abstract. Available: https://doi.org/10.1130/0016-7606(1984)95<1373:GSAOOT>2.0.CO;2</a >.

Mefford, B., and Z. Sutphin. 2008. Intake Diversion Dam Fish Screens. Evaluation of Fish Screens for Protecting Early Life Stages of Pallid Sturgeon. Hydraulic Laboratory Report HL-2007-010. Draft. September. Denver, CO: Bureau of Reclamation, Technical Service Center, Water Resources Research Laboratory. https://www.usbr.gov/gp/mtao/loweryellowstone/EA/Final%20EA/Support/Reclamation%202008%20Intake%20Diversion%20Dams%20Fish%20Screens.pdf</a >

Michel, C. L., J. J. Notch, F. Cordoleani, A. J. Ammann, and E. M. Danner. 2021. Nonlinear Survival of Imperiled Fish Informs Managed Flows in a Highly Modified River. Ecosphere 12(5):e03498. doi: 10.1002/ecs2.3498. https://esajournals.onlinelibrary.wiley.com/doi/full/10.1002/ecs2.3498</a >

National Marine Fisheries Service. 2014. Recovery Plan for the Evolutionarily Significant Units of Sacramento River Winter-Run Chinook Salmon and Central Valley Spring-Run Chinook Salmon and the Distinct Population Segments of California Central Valley Steelhead. July. National Marine Fisheries Service West Coast Region. https://www.fisheries.noaa.gov/resource/document/recovery-plan-evolutionarily-significant-units-sacramento-river-winter-run</a >

National Marine Fisheries Service. 2016. Endangered Species Act Section 7(a)(2) Biological Opinion, and Magnuson-Stevens Fishery Conservation and Management Act Essential Fish Habitat Response and Fish and Wildlife Coordination Act Recommendations for Relicensing the Oroville Facilities Hydroelectric Project, Butte County California (FERC Project No. 2100-134). Sacramento, CA: United States Department of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service, West Coast Region. https://repository.library.noaa.gov/view/noaa/27563</a >

National Marine Fisheries Service. 2018. Endangered Species Act Section 7(a)(2) Biological Opinion, and Magnuson-Stevens Fishery Conservation and Management Act Essential Fish Habitat Response and Fish and Wildlife Coordination Act Recommendations for the NOAA Restoration Center’s Program to Facilitate Implementation of Restoration Projects in the Central Valley of California. NMFS Consultation Number: WCR-2017-8532. August 31. Sacramento, CA: United States Department of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service, West Coast Region. https://suscon.org/wp-content/uploads/2018/09/2018-08-31-NOAA-Restoration-Centers-Central-Valley-BiOp.pdf</a >

National Marine Fisheries Service. 2019. Biological Opinion on Long-term Operation of the Central Valley Project and the State Water Project. October. https://repository.library.noaa.gov/view/noaa/22046</a >

National Oceanic and Atmospheric Adminstration Fisheries Office of Protected Resources. 2022. Recovery of Species Under the Endangered Species Act. Last updated: February 24, 2022. Available: https://www.fisheries.noaa.gov/national/endangered-species-conservation/recovery-species-under-endangered-species-act</a >. Accessed: April 8, 2022.

National Research Council. 2010. A Scientific Assessment of Alternatives for Reducing Water Management Effects on Threatened and Endangered Fishes in California’s Bay-Delta. Washington, DC: The National Academies Press. Available: https://doi.org/10.17226/12881</a >.

Orlando, J. L., M. De Parsia, C. Sanders, M. Hladik, and J. Frantzich. 2020. Pesticide Concentrations Associated with Augmented Flow Pulses in the Yolo Bypass and Cache Slough Complex, California. U.S. Geological Survey Open-File Report 2020–1076. Available: https://doi.org/10.3133/ofr20201076</a >.

Orme, D., and K. Surpless. 2019. The Birth of a Forearc: The Basal Great Valley Group, California, USA, Geology 4:757–761. Available: https://doi.org/10.1130/G46283.1</a >.

Pagel, J. E., D. M. Whittington, and G. T. Allen. 2010. Interim Golden Eagle Inventory and Monitoring Protocols; and Other Recommendations. Division of Migratory Bird Management, U.S. Fish and Wildlife Service, Carlsbad, CA and Arlington, VA. https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&cad=rja&uact=8&ved=2ahUKEwiU8umJhK2BAxVVIUQIHQ1QAfEQFnoECBkQAQ&url=https%3A%2F%2Fnrm.dfg.ca.gov%2FFileHandler.ashx%3FDocumentID%3D83940&usg=AOvVaw1SKdU-ZYJPp3nOpeLEo-2R&opi=89978449</a >

Payne, T. R. 2005. Addendum to Phase II Report Evaluation of Project Efforts on Instream Flows and Fish Habitat. SP-F16. Sacramento, CA. Prepared for Oroville Facilities Relicensing Environmental Work Group, California Department of Water Resources. Sacramento, CA.

Perry, R. W., A. C. Hansen, S. D. Evans, and T. J. Kock. 2020. Using the STARS Model to Evaluate the Effects of Two Proposed Projects for the Long-Term Operation of the State Water Project Incidental Take Permit Application and CEQA Compliance. Open-File Report 2019-1127. Version 2.0. February. U.S. Geological Survey, Reston, VA. https://pubs.usgs.gov/publication/ofr20191127</a >

Perry, R. W., A. C. Pope, J. G. Romine, P. L. Brandes, J. R. Burau, A. R. Blake, A. J. Ammann, and C. J. Michel. 2018. Flow-Mediated Effects on Travel Time, Routing, and Survival of Juvenile Chinook Salmon in a Spatially Complex, Tidally Forced River Delta. Canadian Journal of Fisheries and Aquatic Sciences 75(11):1886–1901. https://cdnsciencepub.com/doi/abs/10.1139/cjfas-2017-0310</a >

Poytress, W. R., J. J. Gruber, F. D. Carrillo, and S. D. Voss. 2014. Compendium Report of Red Bluff Diversion Dam Rotary Screw Trap Juvenile Anadromous Fish Production Indices for Years 2002–2012. Report of U.S. Fish and Wildlife Service to California Department of Fish and Wildlife and Bureau of Reclamation. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1133%20Poytress%20et%20al.%202014.%20Juvenile%20Anadromous%20Fish%20Monitoring%20Compendium%20Report%20(2002-2012).pdf</a >

Pybus, M. J, D. P. Hobson, and D. K. Onderka. 1986. Mass Mortality of Bats Due to Probable Blue-green Algal Toxicity. Journal of Wildlife Diseases 22(3):449–450. https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&cad=rja&uact=8&ved=2ahUKEwjrluPLhq2BAxXvI0QIHcB-ClAQFnoECBIQAQ&url=https%3A%2F%2Fbioone.org%2Fjournals%2Fjournal-of-wildlife-diseases%2Fvolume-22%2Fissue-3%2F0090-3558-22.3.449%2FMass-Mortality-of-Bats-Due-to-Probable-Blue-green-Algal%2F10.7589%2F0090-3558-22.3.449.full&usg=AOvVaw3ryF7n5ljNrldwR4oMWPQ8&opi=89978449</a >

Richter, B. D., M. M. Davis, C. Apse, and C. Konrad. 2011. Short Communication: A Presumptive Standard for Environmental Flow Protection. River Research and Applications. Published online in Wiley Online Library (wileyonlinelibrary.com). DOI: 10.1002/rra.1511. https://onlinelibrary.wiley.com/doi/10.1002/rra.1511</a >

Rose, J. P., B. J. Halstead, R. H. Packard, and R. N. Fisher. 2022. Projecting the Remaining Habitat for the Western Spadefoot (Spea hammondii) in Heavily Urbanized Southern California. Global Ecology and Conservation 33:1–16. https://www.sciencedirect.com/science/article/pii/S2351989421004947</a >

Rowell, J. H. 1990. USBR Monthly Temperature Model–Sacramento River Basin. June. Bureau of Reclamation, Sacramento, CA.

Schaffter, R. G. 1997. White Sturgeon Spawning Migrations and Location of Spawning Habitat in the Sacramento River, California. California Fish and Game 83(1):1–20. https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&cad=rja&uact=8&ved=2ahUKEwjz5cDPiK2BAxV3LkQIHccjDy4QFnoECA8QAQ&url=https%3A%2F%2Fwww.waterboards.ca.gov%2Fwaterrights%2Fwater_issues%2Fprograms%2Fbay_delta%2Fcalifornia_waterfix%2Fexhibits%2Fdocs%2Fpetitioners_exhibit%2Fdwr%2Fpart2%2FDWR-1112%2520Shaffter_et_al_1997_white_sturgeon_spwaning_SacR.pdf&usg=AOvVaw0SRzqcES2lBQmXEeKwF0Xb&opi=89978449</a >

Seesholtz, A. M., M. J. Manuel, and J. P. Van Eenennaam. 2015. First Documented Spawning and Associated Habitat Conditions for Green Sturgeon in the Feather River, California. Environmental Biology of Fishes 98(3):905–912. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626713.pdf</a >

Shervais, J., D. Kimbrough, P. Renne, B. Hanan, B. Murchey, C. Snow, M. Zoglman Schuman, and J. Beaman. 2004. Multi-Stage Origin of the Coast Range Ophiolite, California: Implications for the Life Cycle of Supra-Subduction Zone Ophiolites. International Geology Review 46(4):289–315. doi: 10.2747/0020-6814.46.4.289. https://www.researchgate.net/publication/237543460_MultiStage_Origin_of_the_Coast_Range_Ophiolite_California_Implications_for_the_Life_Cycle_of_Supra-Subduction_Zone_Ophiolites</a >

Sites Project Authority. 2017a. Sites Project Executive Summary for California’s Water Storage Investment Program. August 14. Available: https://sitesproject.org/wp-content/uploads/2018/03/SitesExecutiveSummary_Final_August2017.pdf</a >. Accessed: September 1, 2022.

Sites Project Authority. 2022. Sites Project Authority Application to Appropriate Water and Petition for Partial Assignment and Release from Priority. May 10.

Sommer, T., B. Harrell, M. Nobriga, R. Brown, P. Moyle, W. Kimmerer, and L. Schemel. 2001. California’s Yolo Bypass: Evidence that Flood Control Can Be Compatible with Fisheries, Wetlands, Wildlife, and Agriculture. Fisheries 26(8):6–16. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/sldmwa/sommeretal2001b.pdf</a >

Spencer, W. D., P. Beier, K. Penrod, K. Winters, C. Paulman, H. Rustigian-Romsos, J. Strittholt, M. Parisi, and A. Pettler. 2010. California Essential Habitat Connectivity Project: A Strategy for Conserving a Connected California. Prepared for California Department of Transportation, California Department of Fish and Game, and Federal Highways Administration. Sacramento, CA. http://www.scwildlands.org/reports/CaliforniaEssentialHabitatConnectivityProject.pdf</a >

State Clearinghouse. 2015. 2015 EBMUD Water Transfers with GCID, SMWC, and RD 1004. State Clearing House Number 2011011010. Available: https://ceqanet.opr.ca.gov/2011011010/5</a >. Accessed: April 13, 2022.

State Water Resources Control Board. 2017a. Draft Staff Report for Scientific Peer Review for the Amendment to the Water Quality Control Plan for Inland Surface Waters, Enclosed Bays, and Estuaries of California, Mercury Reservoir Provisions–Mercury TMDL and Implementation Program for Reservoirs. April. Available: https://www.waterboards.ca.gov/water_issues/programs/mercury/reservoirs/docs/peer_review/02_staff_report_scientific_peer_review.pdf</a >. Accessed: August 3, 2022.

State Water Resources Control Board. 2017b. Final Staff Report: Part 2 of the Water Quality Control Plan for Inland Surface Waters, Enclosed Bays, and Estuaries of California–Tribal and Subsistence Fishing Beneficial Uses and Mercury Provisions. Available: https://www.waterboards.ca.gov/water_issues/programs/mercury/docs/hg_SR_final.pdf</a >.

Tetra Tech. 2011. Phase III Two-Dimensional Modeling of M&T/Llano Seco Pumping Plant Reach, Sacramento River, RM 192.5, California. Report Submitted to Ducks Unlimited, Inc. October 5. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%203/Ch04_ResponsesToComments/Tetra%20Tech_2011_Phase%20III%20Two-Dimensional%20Modeling.pdf</a >

The Nature Conservancy. 2018. Plant Rooting Depth Database. Last updated: May 25, 2021. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%203/Ch04_ResponsesToComments/The%20Nature%20Conservancy_2018_Plant%20Rooting%20Depth%20Database.pdf</a >

Thomson, R. C., A. N. Wright, and H. B. Shaffer. 2016. California Amphibian and Reptile Species of Special Concern. University of California Press. Oakland. CA. https://wildlife.ca.gov/Conservation/SSC/Amphibians-Reptiles</a >

U.S. Army Corps of Engineers. 2015. Final 2015 Regional Compensatory Mitigation and Monitoring Guidelines for South Pacific Division USACE. Final. January 12. Available: https://www.spd.usace.army.mil/Portals/13/docs/regulatory/mitigation/MitMon.pdf</a >. Accessed: June 21, 2021.

U.S. Army Corps of Engineers. 2022. Regulatory In-lieu Fee and Bank Information Tracking System (RIBITS). Available: https://ribits.ops.usace.army.mil/ords/f?p=107:201:16344960459452::NO</a >. Accessed: May 6, 2022.

U.S. Army Engineer Research and Development Center. 2017. Scenario Analysis of Fremont Weir Notch – Integration of Engineering Designs, Telemetry, and Flow Fields. Technical Memorandum for the Yolo Bypass Salmonid Habitat Restoration and Fish Passage Project. Sacramento, CA.

U.S. Department of the Interior, Office of the Solicitor. 2014. Trinity River Division Authorization’s 50,000 Acre-Foot Proviso and the 1959 Contract between the Bureau of Reclamation and Humboldt County. M-37030. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/PCFFA&IGFR/part2/pcffa_90.pdf</a >

U.S. Fish and Wildlife Service. 2005. Flow-Habitat Relationships for Chinook Salmon Rearing in the Sacramento River between Keswick Dam and Battle Creek. Prepared by Staff of Energy Planning and Instream Flow Branch. Sacramento, CA. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/usfws_2005.pdf</a >

U.S. Fish and Wildlife Service. 2019. Biological Opinion for the Reinitiation of Consultation on the Coordinated Operations of the Central Valley Project and State Water Project. Service File No. 08FBTD00-2019-F-0164. October. https://www.fisheries.noaa.gov/resource/document/biological-opinion-reinitiation-consultation-long-term-operation-central-valley</a >

U.S. Geological Survey. 2011. Status of Groundwater Quality in the Southern, Middle, and Northern Sacramento Valley Study Units, 2005–08: California GAMA Priority Basin Project. Available: https://pubs.usgs.gov/sir/2011/5002/pdf/sir20115002.pdf</a >. Accessed: April 18, 2022.

U.S. Geological Survey. 2021. U.S. Geological Survey Earthquake Hazards Program. M 1.8 – 4km SSE of Hamilton City, CA. Last revised: April 5, 2021. Available: https://earthquake.usgs.gov/earthquakes/eventpage/nc73545750/executive</a >. Accessed: March 28, 2022.

U.S. Geological Survey. 2022. Earthquake Magnitude, Energy Release, and Shaking Intensity. Available: https://www.usgs.gov/programs/earthquake-hazards/earthquake-magnitude-energy-release-and-shaking-intensity</a >. Accessed: May 3, 2022.

Verhille, C. E., J. B. Poletto, D. E. Cocherell, B. DeCourten, S. Baird, J. J. Cech, and N. A. Fangue. 2014. Larval Green and White Sturgeon Swimming Performance in Relation to Water-Diversion Flows. Conservation Physiology 2(1):cou031. https://academic.oup.com/conphys/article/2/1/cou031/329322</a >

Vogel, D. A. 2008. Biological Evaluations of the Fish Screens at the Glenn–Colusa Irrigation District’s Sacramento River Pump Station: 2002–2007. Natural Resource Scientists, Inc., Red Bluff, CA. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626423.pdf</a >

Wagner, R. W., M. Stacey, L. R. Brown, and M. Dettinger. 2011. Statistical Models of Temperature in the Sacramento–San Joaquin Delta under Climate-Change Scenarios and Ecological Implications. Estuaries and Coasts 34:544–556. https://link.springer.com/article/10.1007/s12237-010-9369-z</a >

Yolo Habitat Conservancy. 2018. Yolo Final Habitat Conservation Plan/Natural Community Conservation Plan, Volume 1. Chapter 2. April. Available: https://www.yolohabitatconservancy.org/documents/8f41bd_ab0c1c4cb0684d06b361bd45fd93b9dd.pdf</a >. Accessed: July 18, 2022.

MR 01

California Department of Water Resources. 2022. Draft Environment Impact Report for the Delta Conveyance Project. Available:

California Water Commission. 2021. Water Storage Investment Program: Sites Reservoir Project Continuing Eligibility and Feasibility Determination (Action Item). Available: https://cwc.ca.gov/-/media/CWC-Website/Files/Documents/2021/12_December/December2021_Item_10_SitesFeasibility_Final.pdf</a >. Accessed: May 17, 2022.

California Water Commission. 2022. About Us. Available: https://cwc.ca.gov/About-Us</a >. Accessed: April 28, 2022.

Council on Environmental Quality. 1997. Environmental Justice Guidance Under the National Environmental Policy Act. Available: https://www.epa.gov/sites/default/files/2015-02/documents/ej_guidance_nepa_ceq1297.pdf</a >. Accessed July 14, 2022.

Robie, R. B. 2012. Effective Implementation of the Public Trust Doctrine in California Water Resources Decision-Making: A View From the Bench. UCDL Rev. 45:1155. https://lawreview.law.ucdavis.edu/issues/45/3/topic/45-3_robie.pdf</a >

Sites Project Authority. 2020. Sites Project Authority Final Strategic Plan. December 2020. Available:

Sites Project Authority. 2022a. Frequently Asked Questions. Available:< https://sitesproject.org/frequently-asked-questions/</a >>. Accessed: April 28, 2022.

Sites Project Authority. 2022b. Water Availability Analysis for Sites Reservoir Water Right Application. May 10. Prepared by MBK Engineers for Sites Project Authority, Sacramento, CA.

Sites Project Authority. 2022c. Sites Project Authority Application to Appropriate Water and Petition for Partial Assignment and Release from Priority. May 10.

Sites Project Authority. 2023a. Memorandum Responding to the State Water Resources Control Board, Division of Water Rights August 26, 2022 Acceptance Letter. January 6. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%203/Ch03_MasterResponses/MR1_GeneralResponses/Authority_2023_Memo_Sites%20Response%20to%20Aug%2026%20SB%20Letter.pdf</a >

Sites Project Authority. 2023b. Application A025517X01 of Sites Project Authority, Analysis with Voluntary Agreements (JH:A025517X01), with attachments. June 16. Application: (https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%203/Ch03_MasterResponses/MR1_GeneralResponses/Authority%202023b_VA%20Analysis%20Submittal.pdf</a > ); Attachment 1: (https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%203/Ch03_MasterResponses/MR1_GeneralResponses/Authority%202023b_Att1.pdf</a > ); Attachment 2: (https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%203/Ch03_MasterResponses/MR1_GeneralResponses/Authority_2023b_Att2.pdf</a >)

State Water Resources Control Board, California Department of Water Resources, and California Department of Fish and Wildlife. 2023. Draft Scientific Basis Report Supplement in Support of Proposed Voluntary Agreements for the Sacramento River, Delta, and Tributaries Update to the San Francisco Bay/Sacramento-San Joaquin Delta Water Quality Control Plan. January 5. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/2023/202301-bd-draft-sbrsupp.pdf</a >. Accessed: July 1, 2023.

U.S. Department of the Interior. 2017. Departmental Manual: Environmental Quality Programs Part 525, Chapter 1. Available: https://www.doi.gov/sites/doi.gov/files/elips/documents/525-dm-1.pdf</a >. Accessed: July 14, 2022.

Sites Project Authority. 2020. Sites Project Authority Final Strategic Plan. December 2020.

Sites Project Authority. 2020. Sites Project Authority Final Strategic Plan. December 2020.

Sites Project Authority. 2022b. Water Availability Analysis for Sites Reservoir Water Right Application. May 10. Prepared by MBK Engineers for Sites Project Authority, Sacramento, CA.

Sites Project Authority. 2022b. Water Availability Analysis for Sites Reservoir Water Right Application. May 10. Prepared by MBK Engineers for Sites Project Authority, Sacramento, CA.

Sites Project Authority. 2022c. Sites Project Authority Application to Appropriate Water and Petition for Partial Assignment and Release from Priority. May 10.

Sites Project Authority. 2022c. Sites Project Authority Application to Appropriate Water and Petition for Partial Assignment and Release from Priority. May 10.

MR 02

Bureau of Reclamation. 2020. Record of Decision: Reinitiation of Consultation on the Coordinated Long-Term Modified Operations of the Central Valley Project and State Water Project. February 18, 2020. Available: https://www.usbr.gov/mp/nepa/includes/documentShow.php?Doc_ID=42324</a >.

California Department of Fish and Wildlife. 2020. Long-Term Operation of the State Water Project in the Sacramento–San Joaquin Delta. Incidental Take Permit No. 2081-2019-066-00. March 31, 2020. Sacramento, CA. Available: https://water.ca.gov/-/media/DWR-Website/Web-Pages/Programs/State-Water-Project/Files/ITP-for-Long-Term-SWP-Operations.pdf</a >.

Council on Environmental Quality. 2016. Final Guidance for Federal Departments and Agencies on Consideration of Greenhouse Gas Emissions and the Effects of Climate Change in National Environmental Policy Act Reviews. (Withdrawn in April 2017 and then new draft guidance was issued in June 2019.) https://ceq.doe.gov/docs/ceq-regulations-and-guidance/nepa_final_ghg_guidance.pdf</a >

Hassrick, J. L., A. J. Ammann, R. W. Perry, S. N. John, and M. E. Daniels. 2022. Factors Affecting Spatiotemporal Variation in Survival of Endangered Winter‐Run Chinook Salmon Out‐Migrating from the Sacramento River. North American Journal of Fisheries Management 42(2):375–395. https://afspubs.onlinelibrary.wiley.com/doi/full/10.1002/nafm.10748</a >

Michel, C., J. Notch, F. Cordoleani, A. Ammann, and E. Danner. 2021. Nonlinear Survival of Imperiled Fish Informs Managed Flows in a Highly Modified River. Ecosphere. doi: 10.1002/ecs2.3498. https://esajournals.onlinelibrary.wiley.com/doi/full/10.1002/ecs2.3498</a >

Poytress, W. R., J. J. Gruber, F. D. Carrillo, and S. D. Voss. 2014. Compendium Report of Red Bluff Diversion Dam Rotary Screw Trap Juvenile Anadromous Fish Production Indices for Years 2002–2012. Prepared for California Department of Fish and Wildlife Ecosystem Restoration Program and the Bureau of Reclamation. July. U.S. Fish and Wildlife Service, Red Bluff, CA. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1133%20Poytress%20et%20al.%202014.%20Juvenile%20Anadromous%20Fish%20Monitoring%20Compendium%20Report%20(2002-2012).pdf</a >

Steel, A. E., J. J. Anderson, B. Mulvey, and D. L. Smith. 2020. Applying the Mean Free-Path Length Model to Juvenile Chinook Salmon Migrating in the Sacramento River, California. Environmental Biology of Fishes 103:1603–1617. doi: https://doi.org/10.1007/s10641-020-01046-8</a >.

U.S. Department of Interior and California Department of Water Resources. 2018. Addendum to the Agreement Between the United States of America and the State of California for the Coordinated Operation of the Central Valley Project and the State Water Project. https://water.ca.gov/-/media/DWR-Website/Web-Pages/Programs/State-Water-Project/Files/Coordinated-Agreement-between-Reclamation-and-DWR_a_y20.pdf</a >

U.S. Geological Survey. 2021. National Water Information System, Peak Streamflow for the Nation. Stream gage 11390672 Stone Corral C Nr Sites CA. Available: https://nwis.waterdata.usgs.gov/nwis/peak?site_no=11390672&agency_cd=USGS&format=html</a >. Accessed: February 2021.

U.S. Geological Survey. 2022. StreamStats, Peak-Flow Statistics Flow Report [2012 5113 Region 1 North Coast]. https://pubs.usgs.gov/sir/2012/5113/

MR 03

Bureau of Reclamation. 2008. Central Valley Project and State Water Project Operations Criteria and Plan Biological Assessment. Appendix D, CalSim-II Model. May. https://www.usbr.gov/mp/cvo/OCAP/docs/OCAP_BA_2008.pdf</a >

Bureau of Reclamation. 2020. Record of Decision: Reinitiation of Consultation on the Coordinated Long-Term Modified Operations of the Central Valley Project and State Water Project. February 18, 2020. Available: https://www.usbr.gov/mp/nepa/includes/documentShow.php?Doc_ID=42324</a >.

Bureau of Reclamation and California Department of Water Resources. 1986. Agreement between the United States of America and the State of California for Coordinated Operation of the Central Valley Project and the State Water Project. November. https://water.ca.gov/-/media/DWR-Website/Web-Pages/Programs/State-Water-Project/Files/Coordinated-Agreement-between-Reclamation-and-DWR_a_y20.pdf</a >

California Department of Fish and Wildlife. 2020. Incidental Take Permit for Long-Term Operation of the State Water Project in the Sacramento–San Joaquin Delta (2081-2019-066-00). March 31. https://water.ca.gov/-/media/DWR-Website/Web-Pages/Programs/State-Water-Project/Files/ITP-for-Long-Term-SWP-Operations.pdf</a >

California Department of Water Resources. 2008. Oroville Facilities Relicensing Final Environmental Impact Report. https://vdocuments.mx/final-environmental-impact-report-final-environmental-impact-report-oroville.html?page=1</a >

California Department of Water Resources. 2016. Estimates of Natural and Unimpaired Flows for the Central Valley of California: Water Years 1922–2014. Draft. CSC-SC-75. March. https://data.ca.gov/dataset/estimates-of-natural-and-unimpaired-flows-for-the-central-valley-of-california-wy-1922-2014</a >

California Department of Water Resources. 2022. Draft Environment Impact Report for the Delta Conveyance Project. Available: https://cadwr.app.box.com/s/gyecr8xrc4gogrprmdnf2mxdipw4hnvg</a >

CH2M HILL. 2011. USRDOM Development, Calibration, and Application. Final. Sacramento, CA. Prepared for Bureau of Reclamation, Mid Pacific Region, CA.

Close, A., W. M. Haneman, J. W. Labadie, D. P. Loucks, J. R. Lund, D. C. McKinney, and J. R. Stedinger. 2003. A Strategic Review of CALSIM II and Its Use for Water Planning, Management, and Operations in Central California. Submitted to the California Bay Delta Authority Science Program Association of Bay Governments. Oakland, CA. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/PCFFA&IGFR/PCFFA_20_review.pdf</a >

Draper, A. J., A. Munévar, S. K. Arora, E. Reyes, N. L. Parker, F. I. Chung, and L. E. Peterson. 2004. CalSim: Generalized Model for Reservoir System Analysis. American Society of Civil Engineers. Journal of Water Resources Planning and Management 130(6): 480-489. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/dd_jardins/ddj_x57.pdf</a >

U.S. Army Corps of Engineers. 2022. Draft Environmental Impact Statement for the Delta Conveyance Project. Available: deltaconveyanceproject.com Accessed: December 19, 2022.

U.S. Fish and Wildlife Service. 2019. Biological Opinion for the Reinitiation of Consultation on the Coordinated Operations of the Central Valley Project and State Water Project. Service File No. 08FBTD00-2019-F-0164. October 21, 2019. Sacramento, CA. https://www.fisheries.noaa.gov/resource/document/biological-opinion-reinitiation-consultation-long-term-operation-central-valley

MR 04

Arienzo, M., L. Ferrara, M. Trifuoggi, and M. Toscanesi. 2022. Advances in the Fate of Rare Earth Elements, REE, in Transitional Environments: Coasts and Estuaries. Water 14(3):401. DOI: https://doi.org/10.3390/w14030401</a >.

Ashby, S.L. 2000. Removal of Manganese in Reservoir Tailwaters as a Function of Reservoir Operations and River Substrate. LSU Historical Dissertations and Theses. 7335. Available: https://digitalcommons.lsu.edu/gradschool_disstheses/7335</a >.

Ashby, S.L., S.P. Faulkner, R.P. Gambrell, and B.A. Smith. 2004. Assessing Iron Dynamics in the Release from a Stratified Reservoir. Lake and Reservoir Management 20(1):65–75. DOI: 10.1080/07438140409354101. https://www.tandfonline.com/doi/abs/10.1080/07438140409354101</a >

Baker, L.A., and V.D. Adams. 1982. Predicted Limnology of the Proposed Ridges Basin Reservoir. Utah Water Research Laboratory Paper 615. Available: https://digitalcommons.usu.edu/water_rep/615</a >. Accessed: September 11, 2022.

Beutel, M.W. 2003. Hypolimnetic Anoxia and Sediment Oxygen Demand in California Drinking Water Reservoirs. Lake and Reservoir Management 19(3):208–221. DOI:10.1080/07438140309354086. https://www.tandfonline.com/doi/abs/10.1080/07438140309354086</a >

Brune, G. M. 1953. Trap Efficiency of Reservoirs. June. Transactions, American Geophysical Union 34(3):407–418.

Chu, K.W. and K.L. Chow. 2002. Synergistic toxicity of multiple heavy metals is revealed by a biological assay using a nematode and its transgenic derivative. Aquatic Toxicology 61:53–64. https://www.sciencedirect.com/science/article/abs/pii/S0166445X02000176?via%3Dihub</a >

Colman, J.A., A.J. Massey, and S.B. Levin. 2016. Determination of Dilution Factors for Discharge of Aluminum-Containing Wastes by Public Water-Supply Treatment Facilities into Lakes and Reservoirs in Massachusetts (ver. 1.1, December 2016). U.S. Geological Survey Scientific Investigations Report 2011–5136. 36 p. Available: https://pubs.usgs.gov/sir/2011/5136/</a >. Accessed: April 27, 2023.

Cyanobacteria and Harmful Algal Bloom Network of the California Water Quality Monitoring Council. 2022. California Voluntary Guidance for Response to HABs in Recreational Inland Waters. List of key resources in the HAB Response Plan. Available: https://www.mywaterquality.ca.gov/habs/resources/habs_response.html#advisory_signs</a >.

Feng, J., Y. Gao, Y. Ji, L. Zhu. 2018. Quantifying the interactions among metal mixtures in toxicodynamic process with generalized linear model. Abstract. Journal of Hazardous Materials 345:97–106. Available: https://www.sciencedirect.com/science/article/abs/pii/S030438941730835X</a >.

Franklin, N.M., J.L Stauber, R.P. Lim, and P. Petocz. 2002. Toxicity of Metal Mixtures to a Tropical Freshwater Alga (Chlorella sp.): The Effect of Interactions between Copper, Cadmium, and Zinc on Metal Cell Binding and Uptake. Environmental Toxicology and Chemistry 21(11):2412–2422. https://setac.onlinelibrary.wiley.com/doi/abs/10.1002/etc.5620211121?sid=nlm%3Apubmed</a >

Giles, C., P.D.F. Isles, T. Manley, Y. Xu, G.K. Druschel, and A.W. Schroth. 2015. The mobility of phosphorus, iron, and manganese through the sediment-water continuum of a shallow eutrophic freshwater lake under stratified and mixed water-column conditions. Biogeochemistry 127(1). Available: https://www.researchgate.net/publication/287506409_The_mobility_of_phosphorus_iron_and_manganese_through_the_sediment-water_continuum_of_a_shallow_eutrophic_freshwater_lake_under_stratified_and_mixed_water-column_conditions</a >.

He, Y.T., and P.F. Ziemkiewicz. 2016. Bias in Determining Aluminum Concentrations: Comparison of Digestion Methods and Implications of Al Management. Chemosphere 159:570–576. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%203/Ch03_MasterResponses/MR4_WaterQuality/He%20and%20Ziemkiewicz_2016_Bias%20in%20Determining%20Aluminum%20Concentrations.pdf?csf=1&web=1&e=GvvDTe</a >

Hesslein, R.H., W.S. Broecker, and D.W. Schindler. 1980. Fates of Metal Radiotracers Added to a Whole Lake: Sediment-Water Interactions. Can. J. Fish. Aquat. Sci. 37:378–386. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%203/Ch03_MasterResponses/MR4_WaterQuality/Hesslein%20et%20al_1980_%20Sediment-Water%20Interactions.pdf?csf=1&web=1&e=AiG8q7</a >

Lall, S.P., and S.J. Kaushik. 2021. Review. Nutrition and Metabolism of Minerals in Fish. Animals 11:2711. DOI: https://doi.org/10.3390/ani11092711</a >.

Langmuir, D., P. Chrostowski, B. Vigneault, and R. Chaney. 2004. Issue Paper on the Environmental Chemistry of Metals. Submitted to USEPA Risk Assessment Forum by ERG, August 19. Contract #68-C-02-060. https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&cad=rja&uact=8&ved=2ahUKEwiOs52gq62BAxUVJUQIHUsKBJUQFnoECBkQAQ&url=https%3A%2F%2Foaspub.epa.gov%2Feims%2Feimscomm.getfile%3Fp_download_id%3D437514&usg=AOvVaw0O9UmR9GqXQ2v34PqMY7wA&opi=89978449</a >

Lynch, N.R, T.C. Hoang, and T.E O’Brien. 2016. Acute toxicity of binary-metal mixtures of copper, zinc, and nickel to Pimephales promelas: Evidence of more-than-additive effect. Environmental Toxicology & Chemistry 35(2):446–457. Available: https://webpages.math.luc.edu/~tobrien/research/2016_ETC_paper.pdf</a >.

Niyogi, S, and C. M. Wood. 2004. Biotic Ligand Model, a Flexible Tool for Developing Site-Specific Water Quality Guidelines for Metals. Environmental Science & Technology 38 (23):6177–6192. https://pubmed.ncbi.nlm.nih.gov/15597870/</a >

Olayinka-Olagunju, J.O., A.A. Dosumu, and A.M. Olatunji-Ojo. 2021. Bioaccumulation of Heavy Metals in Pelagic and Benthic Fishes of Ogbese River, Ondo State, South-Western Nigeria. Water, Air, and Soil Pollution 232:44. Available: https://link.springer.com/article/10.1007/s11270-021-04987-7</a >.

Pachana, K., A. Wattanakornsiri, and J. Nanuam. 2010. Heavy Metal Transport and Fate in the Environmental Compartments. NU Science Journal 7(1) :1–11. Available : https://www.researchgate.net/publication/257410426_Heavy_Metal_Transport_and_Fate_in_the_Environmental_Compartments</a >.

Rader, K.J., R.F. Carbonaro, E.D. van Hullebusch, S. Baken, and K. Delbeke. 2019. The Fate of Copper Added to Surface Water: Field, Laboratory, and Modeling Studies. Environmental Toxicology and Chemistry 38(7):1386–1399. doi: 10.1002/etc.4440. Available: https://setac.onlinelibrary.wiley.com/doi/epdf/10.1002/etc.4440</a >.

Rahayu, D.R., S. Anggoro, T.R. Soeprobowati. 2020. Metal Concentrations and Bio-Concentration Factor (BCF) in Surface Water and Economical Fish Species from Wadaslintang Multipurpose Dam, Wonosobo, Indonesia. The South-East Asian+ Conference on Biodiversity and Biotechnology 2018. IOP Conf. Ser.: Earth Environ. Sci. 593 012024. Available: https://www.researchgate.net/publication/347080773_Metal_Concentrations_and_Bio-Concentration_Factor_BCF_in_Surface_Water_and_Economical_Fish_Species_from_Wadaslintang_Multipurpose_Dam_Wonosobo_Indonesia</a >.

Rüdel, H., C. Díaz Muñiz, H. Garelick, N. G. Kandile, B. W. Miller, L. Pantoja Munoz, W. J. G. M. Peijnenburg, D. Purchase, Y. Shevah, P. van Sprang, M. Vijver, J. P.M. Vink. 2015. Consideration of the bioavailability of metal/metalloid species in freshwaters: experiences regarding the implementation of biotic ligand model-based approaches in risk assessment frameworks. Environmental Science and Pollution Research 22:7405–7421. DOI: 10.1007/s11356-015-4257-5. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%203/Ch03_MasterResponses/MR4_WaterQuality/R%C3%BCdel%20et%20al_2015_Bioavailability%20of%20Mtal-Metalloid%20Species%20in%20Freshwaters.pdf</a >

Sakata, M. 1985. Diagenetic remobilization of manganese, iron, copper and lead in anoxic sediment of a freshwater pond. Abstract. Water Research 19(8):1033–1038. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%203/Ch03_MasterResponses/MR4_WaterQuality/Sakata_1985_Diagenetic%20Remobilization.pdf</a >

Smith, K. S., L. S. Balistrieri, and A.S. Todd. 2015. Using biotic ligand models to predict metal toxicity in mineralized systems. Applied Geochemistry 57:55–72. DOI: http://dx.doi.org/10.1016/j.apgeochem.2014.07.005</a >.

State Water Resources Control Board. 2016. A Compilation of Water Quality Goals. 17th Edition. January. Available: https://www.waterboards.ca.gov/water_issues/programs/water_quality_goals/docs/wq_goals_text.pdf</a >.

State Water Resource Control Board. 2017a. Spreadsheet of Water Quality-Based Assessment Thresholds Derived using the Assessment Threshold Algorithms in the Water Quality Goals Staff Report. Available : https://www.waterboards.ca.gov/water_issues/programs/water_quality_goals/</a >.

U.S. Department of Health and Human Services. 2008. Toxicological Profile for Aluminum. September. Available: https://www.atsdr.cdc.gov/ToxProfiles/tp22.pdf</a >.

U.S. Department of Health and Human Services. 2022. Toxicological Profile for Copper, Draft for Public Comment. April. Available: https://www.atsdr.cdc.gov/ToxProfiles/tp132.pdf</a >.

MR 05

Bush, E. E. 2017. Migratory Life Histories and Early Growth of the Endangered Estuarine Delta Smelt (Hypomesus transpacificus). MS thesis. University of California, Davis. Davis, CA.

California Department of Fish and Game. 2009. California Endangered Species Act Incidental Take Permit No. 2081-2009-001-03. Department of Water Resources California State Water Project Delta Facilities and Operations. Yountville, CA: California Department of Fish and Game, Bay-Delta Region. https://www.waterboards.ca.gov/waterrights//water_issues/programs/bay_delta/docs/cmnt081712/dfg/cdfg2009.pdf</a >

California Department of Water Resources. 2020. Final Environmental Impact Report for Long-term Operation of the California State Water Project. State Clearinghouse No. 2019049121. March. https://water.ca.gov/-/media/DWR-Website/Web-Pages/Programs/State-Water-Project/Files/Deliv-42DEIRv1-120519-Volume-I508.pdf</a >

Environmental Science Associates. 2021. Tule Red Tidal Restoration. Annual Monitoring Report – Year 1 2020 Prepared for Westervelt Ecological Services and State and Federal Water Contractors Agency. February. https://www.ecoatlas.org/upfiles/5754/Tule%20Red%202020%20Y1%20Monitoring%20Annual%20Report%202021-02-28.pdf</a >

Gross, E., W. Kimmerer, J. Korman, L. Lewis, S. Burdick, and L. Grimaldo. 2022. Hatching Distribution, Abundance, and Losses to Freshwater Diversions of Longfin Smelt Inferred Using Hydrodynamic and Particle-Tracking Models. Marine Ecology Progress Series 700:179–196.

Hassrick, J. L., A. J. Ammann, R. W. Perry, S. N. John, and M. E. Daniels. 2022. Factors Affecting Spatiotemporal Variation in Survival of Endangered Winter‐Run Chinook Salmon Out‐Migrating from the Sacramento River. North American Journal of Fisheries Management 42(2):375–395. Available: https://doi.org/10.1002/nafm.10748</a >.

Henderson, M. J., I. S. Iglesias, C. J. Michel, A. J. Ammann, and D. D. Huff. 2019. Estimating Spatial-Temporal Differences in Chinook Salmon Outmigration Survival with Habitat and Predation Related Covariates. Canadian Journal of Fisheries and Aquatic Sciences 76(9):1549–1561. https://www.researchgate.net/publication/328974658_Estimating_spatial-temporal_differences_in_Chinook_salmon_outmigration_survival_with_habitat_and_predation_related_covariates</a >

Hennessy, A., and Z. Burris. 2017. Preliminary Analysis of Current Relationships between Zooplankton Abundance and Freshwater Outflow in the Upper San Francisco Estuary. Memorandum to S. Louie, Senior Environmental Scientist, California Department of Fish and Wildlife, Water Branch. February 21. Stockton, CA: California Department of Fish and Wildlife, Bay-Delta Region.

Jungbluth, M., C. Lee, C. Patel, T. Ignoffo, B. Bergamaschi, and W. Kimmerer. 2021. Production of the Copepod Pseudodiaptomus forbesi Is Not Enhanced by Ingestion of the Diatom Aulacoseira granulata during a Bloom. Estuaries and Coasts 44:1083–1099. https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&cad=rja&uact=8&ved=2ahUKEwjb69u4pa2BAxXgJkQIHSQmDWEQFnoECBYQAQ&url=https%3A%2F%2Fnrm.dfg.ca.gov%2FFileHandler.ashx%3FDocumentID%3D211225&usg=AOvVaw0Mbbo6T9jih2cGFJjSlaXS&opi=89978449</a >

Kimmerer, W., and E. Gross. 2022. Population Abundance and Diversion Losses in a Threatened Estuarine Pelagic Fish. Estuaries and Coasts 45:2728–2745. https://link.springer.com/article/10.1007/s12237-022-01101-w</a >

Kimmerer, W. J. 2002. Physical, Biological, and Management Responses to Variable Freshwater Flow into the San Francisco Estuary. Estuaries 25:1275–1290. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/COSJ%20et%20al/part2sur_rebuttal/SJC_452.pdf</a >

Kratville, D. 2010. California Department of Fish and Game Rationale for Effects of Exports. California Department of Fish and Game, Sacramento, CA. https://cawaterlibrary.net/document/department-of-fish-and-game-rationale-for-effects-of-exports/</a >

Michel, C. J. 2019. Decoupling Outmigration from Marine Survival Indicates Outsized Influence of Streamflow on Cohort Success for California’s Chinook Salmon Populations. Canadian Journal of Fisheries and Aquatic Sciences 76:1398–1410. https://www.researchgate.net/publication/328361701_Decoupling_outmigration_from_marine_survival_indicates_outsized_influence_of_streamflow_on_cohort_success_for_California%27s_Chinook_salmon_populations</a >

Munsch, S. H., C. M. Greene, R. C. Johnson, W. H. Satterthwaite, H. Imaki, and P. L. Brandes. 2019. Warm, Dry Winters Truncate Timing and Size Distribution of Seaward‐Migrating Salmon across a Large, Regulated Watershed. Ecological Applications 29(4):e01880. https://esajournals.onlinelibrary.wiley.com/doi/10.1002/eap.1880</a >

Munsch, S. H., C. M. Greene, R. C. Johnson, W. H. Satterthwaite, H. Imaki, P. L. Brandes, and M. R. O’Farrell. 2020. Science for Integrative Management of a Diadromous Fish Stock: Interdependencies of Fisheries, Flow, and Habitat Restoration. Canadian Journal of Fisheries and Aquatic Sciences 77(9):1487–1504. https://tspace.library.utoronto.ca/bitstream/1807/101847/1/cjfas-2020-0075.pdf</a >

Notch, J. J., A. S. McHuron, C. J. Michel, F. Cordoleani, M. Johnson, M. J. Henderson, and A. J. Ammann. 2020. Outmigration Survival of Wild Chinook Salmon Smolts through the Sacramento River during Historic Drought and High Water Conditions. Environmental Biology of Fishes. https://link.springer.com/article/10.1007/s10641-020-00952-1</a >

Perry, R. W., A. C. Pope, J. G. Romine, P. L. Brandes, J. R. Burau, A. R. Blake, A. J. Ammann, and C. J. Michel. 2018. Flow-Mediated Effects on Travel Time, Routing, and Survival of Juvenile Chinook Salmon in a Spatially Complex, Tidally Forced River Delta. Canadian Journal of Fisheries and Aquatic Sciences 75(11):1886–1901. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626756.pdf</a >

Polansky, L., K. B. Newman, and L. Mitchell. 2021. Improving Inference for Nonlinear State-Space Models of Animal Population Dynamics Given Biased Sequential Life Stage Data. Biometrics 77(1):352–361. https://onlinelibrary.wiley.com/doi/full/10.1111/biom.13267</a >

Simenstad, C., J. Van Sickle, N. Monsen, E. Peebles, G. T. Ruggerone, and H. Gosnell. 2016. Independent Review Panel Report for the 2016 California WaterFix Aquatic Science Peer Review. Sacramento, CA: Delta Stewardship Council, Delta Science Program. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/dd_jardins/part2/ddj_216.pdf</a >

Smith, W. E., L. Polansky, and M. L. Nobriga. 2021. Disentangling Risks to an Endangered Fish: Using a State-Space Life Cycle Model to Separate Natural Mortality from Anthropogenic Losses. Canadian Journal of Fisheries and Aquatic Sciences 78(8):1008–1029. https://tspace.library.utoronto.ca/bitstream/1807/106567/1/cjfas-2020-0251.pdf</a >

Stern, M. A., L. E. Flint, A. L. Flint, N. Knowles, and S. A. Wright. 2020. The Future of Sediment Transport and Streamflow Under a Changing Climate and the Implications for Long-Term Resilience of the San Francisco Bay-Delta. Water Resources Research 56(9):e2019WR026245. https://www.google.com/search?q=USFWS+08FBTD00-2019-0164+The+Future+of+Sediment+Transport+and+Streamflow+Under+a+Changing+Climate+and+the+Implications+for+Long-Term+Resilience+of+the+San+Francisco+Bay-Delta&sca_esv=565672122&biw=1865&bih=969&sxsrf=AM9HkKnaeQ4T-QnlTbIzsa8QuujGCeGDkw%3A1694803057519&ei=caQEZcOhH_yWkPIPv7mRmAk&ved=0ahUKEwiDntSxoa2BAxV8C0QIHb9cBJMQ4dUDCBE&uact=5&oq=USFWS+08FBTD00-2019-0164+The+Future+of+Sediment+Transport+and+Streamflow+Under+a+Changing+Climate+and+the+Implications+for+Long-Term+Resilience+of+the+San+Francisco+Bay-Delta&gs_lp=Egxnd3Mtd2l6LXNlcnAirgFVU0ZXUyAwOEZCVEQwMC0yMDE5LTAxNjQgVGhlIEZ1dHVyZSBvZiBTZWRpbWVudCBUcmFuc3BvcnQgYW5kIFN0cmVhbWZsb3cgVW5kZXIgYSBDaGFuZ2luZyBDbGltYXRlIGFuZCB0aGUgSW1wbGljYXRpb25zIGZvciBMb25nLVRlcm0gUmVzaWxpZW5jZSBvZiB0aGUgU2FuIEZyYW5jaXNjbyBCYXktRGVsdGEyBRAAGKIEMgUQABiiBDIFEAAYogRI1jhQ8gpYph1wAngAkAEAmAF6oAHpAaoBAzAuMrgBA8gBAPgBAfgBAuIDBBgBIEGIBgE&sclient=gws-wiz-serp</a >

MR 06

Beedy, E. C., W. J. Hamilton, III, R. J. Meese, D. A. Airola, and P. Pyle. 2020. Tricolored Blackbird (Agelaius tricolor), version 1.0. In Birds of the World (P. G. Rodewald, Editor). Cornell Lab of Ornithology, Ithaca, NY, USA. Available: https://doi.org/10.2173/bow.tribla.01</a >

Beedy, E. C. and W. J. Hamilton III. 1997. Tricolored Blackbird Status Update and Management Guidelines. Jones & Stokes Assoc. Inc., Sacramento CA, Rep. 97-099. Prepared for U.S. Fish and Wildlife Service, Sacramento CA, and California Department of Fish and Game, Sacramento, CA. https://www.sandiegocounty.gov/content/dam/sdc/pds/ceqa/JVR/AdminRecord/IncorporatedByReference/Appendices/Appendix-D—Biological-Resources-Report/Beedy%20and%20Hamilton%201997.pdf</a >

California Department of Fish and Wildlife. 2018. A Status Review of the Tricolored Blackbird (Agelaius tricolor) in California. Report to the Fish and Game Commission. February 2018. https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&cad=rja&uact=8&ved=2ahUKEwjWkKyxoK2BAxVWI0QIHT6vB0QQFnoECA8QAQ&url=https%3A%2F%2Fnrm.dfg.ca.gov%2FFileHandler.ashx%3FDocumentID%3D154287&usg=AOvVaw1wyw8d777Ca5tcSYjfM0YK&opi=89978449</a >

California Department of Fish and Wildlife. 2021b. California Natural Diversity Database, RareFind 5, January. Search for special-status wildlife within 5 miles of the study area, along the Sacramento River, and for selected species records in Glenn and Colusa Counties. Sacramento, CA. https://wildlife.ca.gov/Data/CNDDB/Maps-and-Data</a >

Cook, L. F., and C.A. Toft. 2005. Dynamics of Extinction: Population Decline in the Colonially Nesting Tricolored Blackbird Agelaius tricolor. Bird Conservation International 15:73–88. https://www.cambridge.org/core/services/aop-cambridge-core/content/view/717C6884A1D18511CBDC312318AF0E22/S0959270905000067a.pdf/dynamics-of-extinction-population-decline-in-the-colonially-nesting-tricolored-blackbird-agelaius-tricolor.pdf</a >

DeHaven, R.W., F.T. Crase, and P.D. Woronecki. 1975. Breeding Status of the Tricolored Blackbird, 1969-1972. California Fish and Game 61:166–180. https://tricolor.ice.ucdavis.edu/sites/g/files/dgvnsk3096/files/inline-files/DeHaven%20Crase%20Woronecki%201975%20Breeding%20Status.pdf</a >

Environmental Laboratory. 1987. Corps of Engineers Wetland Delineation Manual. Technical Report Y-87-1. Vicksburg, MS: U.S. Army Waterways Experiment Station. https://www.lrh.usace.army.mil/Portals/38/docs/USACE%2087%20Wetland%20Delineation%20Manual.pdf</a >

Google Earth. 2021. Aerial Imagery for the Study Area. Various dates between 1994 and 2019. Accessed: Various dates between September 2020 and February 2021. Available: https://earth.google.com/web/</a >.

Hamilton, W.J., III. 2004. Tricolored Blackbird Management Recommendations and 2005 Survey Priorities. Report prepared for California Resource Management Institute. https://tricolor.ice.ucdavis.edu/sites/g/files/dgvnsk3096/files/inline-files/Hamilton%202004%20Management%20Recommendations%20and%20Survey%20Priorities.pdf</a >

Meese, R.J. 2017. Results of the 2017 Tricolored Blackbird Statewide Survey. University of California, Davis. Department of Fish and Wildlife, Wildlife Branch, Nongame Wildlife Program Report 2017-04, Sacramento, CA. file:///C:/Users/msavage/Downloads/2017%20Statewide%20Survey%20Final%20Report.pdf</a >

Natural Resources Conservation Service. 2006. Soil Survey of Colusa County, California. USDA, in cooperation with Colusa County Resource Conservation District; State of California, Department of Conservation; Regents of the University of California; United States Department of Agriculture, Forest Service; and United States Department of the Interior, Bureau of Land Management and Fish and Wildlife Service.

Natural Resources Conservation Service. 2020. Soil Survey Geographic (SSURGO) Database for Colusa and Glenn counties, California [Online]. U.S. Department of Agriculture. Available: https://websoilsurvey.sc.egov.usda.gov/App/WebSoilSurvey.aspx</a >. Accessed: October 21, 2020.

Neff, J. A. 1937. Nesting Distribution of the Tricolored Red-wing. Condor 39:61–81. https://tricolor.ice.ucdavis.edu/sites/g/files/dgvnsk3096/files/inline-files/Emlen%201941.pdf</a >

Orians, G.H. 1961. The Ecology of Blackbird (Agelaius) Social Systems. Ecological Monographs 31:285–312. https://esajournals.onlinelibrary.wiley.com/doi/10.2307/1948556</a >

U.S. Fish and Wildlife Service. 2019. Species Status Assessment for the Tricolored Blackbird (Agelaius tricolor). Version 1.1 February 2019. Available: https://ecos.fws.gov/ServCat/DownloadFile/166302</a >.

Personal Communications

Roberts, Matthew. Senior Project Manager. U.S. Army Corps of Engineers, Regulatory Division, Sacramento District, CA. October 1, 2020—Email to Lisa Webber, Botanist/Wetland Ecologist, ICF, Sacramento, CA; John Spranza, Integration Environmental Permitting Lead, HDR, Inc., Sacramento, CA; Monique Briard, Project Manager, ICF, Sacramento, CA; and Michael Vondergeest, Regulatory Specialist, ICF, Sacramento, CA. https://sitesreservoirproject.riptideweb.com/references/REF23/Volume%203/Ch03_MasterResponses/MR6_VegWetlandWildlife/Roberts_2020_Pers%20Comm_Sites%20Reservoir%20(SPK-2001-00055)%20Delineation.pdf

MR 07

Bureau of Land Management. 2004. H-8120-1 General Procedure Guidance for Native American Consultation. December 3, 2004. https://www.blm.gov/sites/blm.gov/files/Manual%20-%20Foundations%20for%20Managing%20Cultural%20Resources.pdf</a >

Central Valley Regional Water Quality Control Board. 2021. Staff Report for Proposed Amendments to the Water Quality Control Plans for the Sacramento River and San Joaquin River Basins and Tulare Lake Basin. November 17. Available: https://www.waterboards.ca.gov/centralvalley/water_issues/basin_plans/tribal_beneficial_uses/tbu_defs_20211201_staffrpt.pdf</a >. Accessed: March 18, 2022.

Central Valley Regional Water Quality Control Board. 2022a. Tribal Beneficial Uses Designations. Webpage updated October 4, 2022. Available: https://www.waterboards.ca.gov/centralvalley/water_issues/basin_plans/tribal_beneficial_uses/</a >. Accessed: December 5, 2022.

Central Valley Regional Water Quality Control Board. 2022b. Amendments to the Water Quality Control Plans for the Sacramento River and San Joaquin River Basins and the Tulare Lake Basin to Incorporate the Definitions for Tribal Beneficial Uses. Available: https://www.waterboards.ca.gov/centralvalley/board_decisions/adopted_orders/resolutions/r5-2022-0018_res.pdf</a >. Accessed: June 8, 2022.

State Water Resources Control Board. 2020. Tribal Beneficial Uses Fact Sheet. November. Available: https://www.waterboards.ca.gov/tribal_affairs/docs/tbu_fact_sheet_v04.pdf

MR 08

Bureau of Reclamation. 2000. Record of Decision Trinity River Mainstem Fishery Restoration Final Environmental Impact Statement/Environmental Impact Report. U.S. Department of Interior, Washington, D.C. Available: https://www.trrp.net/library/document/?id=227</a >.

Bureau of Reclamation. 2017. Record of Decision, Long-Term Plan to Protect Adult Salmon in the Lower Klamath River Final Environmental Impact Statement. Available: https://www.usbr.gov/mp/nepa/includes/documentShow.php?Doc_ID=28314</a >.

Bureau of Reclamation. 2019. Final Environmental Impact Statement for the Reinitiation of Consultation on the Coordinated Long-term Operations of the Central Valley Project and State Water Project. https://www.usbr.gov/mp/nepa/includes/documentShow.php?Doc_ID=41664</a >

U.S. Department of the Interior, Office of the Solicitor. 2014. Trinity River Division Authorization’s 50,000 Acre-Foot Proviso and the 1959 Contract between the Bureau of Reclamation and Humboldt County. M-37030. https://www.doi.gov/sites/doi.opengov.ibmcloud.com/files/uploads/M-37030.pdf

MR 09

Bureau of Reclamation and Department of Water Resources. 2006. North-of-the-Delta Offstream Storage Investigation Final Initial Alternatives Information Report. May.

Bureau of Reclamation and Department of Water Resources. 2008. North-of-the-Delta Offstream Storage Investigation Plan Formulation Report (PFR). http://s3-us-west-2.amazonaws.com/ucldc-nuxeo-ref-media/6a8b0fb3-c504-48cc-86f4-623d280d0ee0</a >

Sites Project Authority. 2022. Sites Project Authority Application to Appropriate Water and Petition for Partial Assignment and Release from Priority. May 10.

Sites Project Authority. 2022. Sites Project Authority Application to Appropriate Water and Petition for Partial Assignment and Release from Priority. May 10.

Sites Project Authority. 2022. Sites Project Authority Application to Appropriate Water and Petition for Partial Assignment and Release from Priority. May 10.

Final EIR/EIS References 2023

Introduction

Volume 1

Volume 2

Chapter 5, Surface Water Resources

Chapter 6, Surface Water Quality

Chapter 7, Fluvial Geomorphology

Chapter 8, Groundwater Resources

Chapter 9, Vegetation and Wetland Resources

Chapter 10, Wildlife Resources

Chapter 11, Aquatic Biological Resources

Chapter 12, Geology and Soils

Chapter 13, Minerals

Chapter 14, Land Use

Chapter 15, Agriculture and Forestry Resources

Chapter 16, Recreation Resources

Chapter 17, Energy

Chapter 18, Navigation, Transportation, and Traffic

Chapter 19, Noise

Chapter 20, Air Quality

Chapter 21, Greenhouse Gas Emissions

Chapter 22, Cultural Resources

Chapter 23, Tribal Cultural Resources

Chapter 24, Visual Resources

Chapter 25, Population and Housing

Chapter 26, Public Services and Utilities

Chapter 27, Public Health and Environmental Hazards

Chapter 28, Climate Change

Chapter 29, Indian Trust Assets

Chapter 30, Environmental Justice and Socioeconomics

Appendix 11J