There are not in-text citations or references for this chapter.

CALFED. 2000. CALFED Bay-Delta Program Record of Decision. August. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/exhibit4/docs/Public_Draft_BDCP_EIR-EIS_Appendix_3A_-_Attachment_1.sflb.pdf 

California Natural Resources Agency, California Environmental Protection Agency, and California Department of Food and Agriculture. 2020. 2020 Water Resilience Portfolio. July. Available: https://waterresilience.ca.gov/wp-content/uploads/2020/07/Final_California-Water-Resilience-Portfolio-2020_ADA3_v2_ay11-opt.pdf

Sites Project Authority. 2020. Value Planning Report. Available: https://sitesproject.org/wp-content/uploads/2020/04/INT-REP-Value-Planning-Appraisal-Report-FinalV2Compressed.pdf 

Sites Project Authority and U.S. Department of the Interior, Bureau of Reclamation. 2017. Sites Reservoir Project Draft Environmental Impact Report/Environmental Impact Statement. August 2017. Available: https://sitesproject.org/environmental-review/draft-environmental-impact-report-environmental-impact-statement/ 

U.S. Department of the Interior, Bureau of Reclamation. 2020. North-of-the-Delta Offstream Storage Investigation Feasibility Report. July. Available: usbr.gov/mp/nodos/docs/final-fr/main-body-es-sites-feasibility-report-508-1-28-21.pdf

Bureau of Reclamation and California Department of Water Resources. 2006. North-of-the-Delta Offstream Storage Investigation: Initial Alternatives Information Report. May. Available: on SharePoint

California Department of Fish and Wildlife. 2020. Incidental Take Permit for Long-term Operations of the State Water Project in the Sacramento-San Joaquin Delta (2081-20129066-00). March. Available: on SharePoint

California Water Commission. 2021. Proposition 1 Water Storage Investment Program: Funding the Public Benefits of Water Storage Projects. Available at: https://cwc.ca.gov/Water-Storage Available: on SharePoint

Cavallo, B., P. Gaskill, J. Melgo, and S. C. Zeug. 2015. Predicting juvenile Chinook salmon routing in riverine and tidal channels of a freshwater estuary. Environmental Biology of Fishes 98:1571–1582. https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626163.pdf  Available: on SharePoint

Michel, C. J., J. J. Notch, F. Cordoleani, and E. M. Danner. 2021. Ecological nonlinearities inform the design of functional flows for imperiled fish in a highly modified river. Ecosphere 12(5):e03498. 10.1002/ecs2.3498.  https://esajournals.onlinelibrary.wiley.com/doi/10.1002/ecs2.3498 Available: on SharePoint

Michel, C. J., A. J. Ammann, S. T. Lindley, P. T. Sandstrom, E. D. Chapman, M. J. Thomas, G. P. Singer, A. P. Klimley, and R. B. MacFarlane. 2015. Chinook salmon outmigration survival in wet and dry years in California’s Sacramento River. Canadian Journal of Fisheries and Aquatic Sciences 72(11):1749–1759. Copyright protected. See introduction for more information.

National Marine Fisheries Service. 2019. Biological Opinion on Long-term Operations of the CVP and SWP. October. https://repository.library.noaa.gov/view/noaa/22046 Available: on SharePoint

National Marine Fisheries Service. 2018. NOAA Fisheries West Coast Region Anadromous Salmonid Passage Design Guidelines. NOAA Technical Memorandum NMFS-NWFSC1xx, PEER REVIEW DRAFT: August 16, 2018. National Marine Fisheries Service, West Coast Region, Oregon & Washington Coastal Office, Environmental Services Branch, California Coastal Office, Environmental Services Branch. 183pp. Available: on SharePoint

Notch, J. 2017. Out-Migration Survival of Wild Chinook Salmon (Oncorhynchus tshawytscha) Smolts from Mill Creek through the Sacramento River during Drought Conditions. Master's Thesis. University of California, Santa Cruz. https://escholarship.org/uc/item/7bd097f3 Available: on SharePoint

Poytress, W. R., J. J. Gruber, F. D. Carrillo, and S. D. Voss. 2014. Compendium Report of Red Bluff Diversion Dam Rotary Trap Juvenile Anadromous Fish Production Indices for Years 2002–2012. U.S. Fish and Wildlife Service. Red Bluff Fish and Wildlife Office, CA. 151 pp. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1133%20Poytress%20et%20al.%202014.%20Juvenile%20Anadromous%20Fish%20Monitoring%20Compendium%20Report%20(2002-2012).pdf Available: on SharePoint

Sites Project Authority. 2020. Sites Project Value Planning Alternatives Appraisal Report. April. https://sitesproject.org/wp-content/uploads/2020/04/INT-REP-Value-Planning-Appraisal-Report-FinalV2Compressed.pdf Available: on SharePoint

State Water Resources Control Board. 2000. Revised Water Right Decision 1641. March. https://www.waterboards.ca.gov/waterrights/board_decisions/adopted_orders/decisions/d1600_d1649/wrd1641_1999dec29.pdf Available: on SharePoint

U.S. Fish and Wildlife Service. 2019. Biological Opinion for the Reinitiation of Consultation on the Coordinated Operations of the CVP and SWP. Service File No. 08FBTD00-2019-F0164. October. Available: on SharePoint

California Department of Fish and Wildlife. 2020. Long-Term Operation of the State Water Project in the Sacramento–San Joaquin Delta. Incidental Take Permit No. 2081-2019-066-00. March 31, 2020. Sacramento, CA. Available: https://water.ca.gov/-/media/DWR-Website/Web-Pages/Programs/State-Water-Project/Files/ITP-for-Long-Term-SWP-Operations.pdf 

National Marine Fisheries Service. 2019. Biological Opinion on Long-Term Operation of the Central Valley Project and the State Water Project. October 21, 2019. Available: https://repository.library.noaa.gov/view/noaa/22046  

U.S. Department of the Interior, Bureau of Reclamation. 2020. Record of Decision: Reinitiation of Consultation on the Coordinated Long-Term Modified Operations of the Central Valley Project and State Water Project. February 18, 2020. Available: https://www.usbr.gov/mp/nepa/includes/documentShow.php?Doc_ID=42324 Available: on SharePoint

U.S. Fish and Wildlife Service. 2019. Biological Opinion for the Reinitiation of Consultation on the Coordinated Operations of the Central Valley Project and State Water Project. Service File No. 08FBTD00-2019-F-0164. October 21, 2019. Sacramento, CA. Available: on SharePoint

There are not in-text citations or references for this chapter.

Butte County Department of Water and Resource Conservation. 2016. Butte County Water Inventory Analysis. Final Report. June 2016. Available: http://buttecounty.granicus.com/MetaViewer.php?view_id=2&clip_id=341&meta_id=57394 Available: on SharePoint

California Department of Transportation. 2020. Seismic Design Criteria. Version 2.0. https://dot.ca.gov/-/media/dot-media/programs/engineering/documents/seismicdesigncriteria-sdc/202007-seismicdesigncriteria-v2-a11y.pdf Available: on SharePoint

California Department of Water Resources. 1995. Delta Atlas. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/exhibit3/rdeir_sdeis_comments/RECIRC_2646_ATT%203.pdf Available: on SharePoint

California Department of Water Resources. 2005. North of Delta Offstream Storage Investigations, Sites Reservoir Inundation Analysis. Available: on SharePoint

California Department of Water Resources. 2010. Fact Sheet, Sacramento River Flood Control Project Weirs and Flood Relief Structures. Last revised: Unknown. Available: http://www.rd108.org/wp-content/uploads/2015/07/WeirsReliefStructures.pdf  

California Department of Water Resources and U.S. Bureau of Reclamation. 2016. California WaterFix Biological Assessment, Appendix 5A–Attachment 4: Yolo Bypass Floodplain Hydraulics. July. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/exhibit104/docs/App_5.A_CALSIM_RevisedDraftBA.pdf Available: on SharePoint

California Department of Water Resources. 2017a. State Plan of Flood Control Descriptive Document Update. August. Last revised: Unknown. Available at: https://cawaterlibrary.net/wp-content/uploads/2017/10/CVFPP-SPFC-DescriptiveDoc-Aug2017-compiled.pdf Available: on SharePoint

California Department of Water Resources. 2017b. 2017 Flood System Status Report. August. Last revised: Unknown. Available at: https://cawaterlibrary.net/document/2017-flood-system-status-report/ Available: on SharePoint

California Department of Water Resources. 2019. California Water Plan Update 2018. Available: https://water.ca.gov/-/media/DWR-Website/Web-Pages/Programs/California-Water-Plan/Docs/Update2018/Final/California-Water-Plan-Update-2018.pdf 

California Department of Water Resources. 2020. The Final State Water Project Delivery Capability Report 2019. August 26, 2020. Available: https://data.cnra.ca.gov/dataset/state-water-project-delivery-capability-report-dcr-2019/resource/119da5c5-1c47-4142-8896-334628ca61cd Available: on SharePoint

cbec. In preparation. Draft Technical Memorandum: Historic Flow Analysis (14‐1036–Knights Landing Outfall Gates Fish Exclusion Project). Available: on SharePoint

Colusa County Resource Conservation District. 2012. Colusa Basin Watershed Management Plan. December. Last revised: Unknown. https://www.sacramentoriver.org/forum/lib/library/docs/Colusa_Basin_Watershed_Management_Plan_(2012).pdf Available: on SharePoint

Glenn-Colusa Irrigation District. n.d. GCID Fact sheet. Available: https://912afe62-5b11-482e-8c47-c2358db4f96b.filesusr.com/ugd/c88b6b_b5394b07da4d40a280cb0795b19469d9.pdf?index=true Available: on SharePoint

Gray, A.B. and Pasternack, G.B. 2016. Colusa Basin Drainage Area Fluvial Sediments: Dynamics, Environmental Impacts and Recommendations for Future Monitoring of The Colusa Basin Suspended Sediment Project. (SWAMP-MR-RB5-2016-0002.) Prepared for Central Valley Regional Water Quality Control Board, Sacramento, CA. Last revised: Unknown. Available: https://www.waterboards.ca.gov/water_issues/programs/swamp/docs/reglrpts/r5_cbds_reg_mar2016.pdf Available: on SharePoint

H. T. Harvey & Associates, G. Mathias Kondolf, Geomorph, and Blankinship & Associates. 2008. Colusa Basin Watershed Assessment. Prepared for Colusa County Resource Conservation District. December. https://calisphere.org/item/ark:/86086/n28c9v8k/ Available: on SharePoint

Irvine Ranch Water District. 2021. Water Supply & Reliability. Available: https://www.irwd.com/services/water-supply-reliability#:~:text=IRWD's%20drinking%20water%20comes%20from,geographic%20location%20within%20the%20District.&text=into%20the%20future.-,IRWD's%20drinking%20water%20comes%20from%20two%20primary,local%20groundwater%20and%20imported%20water Available: on SharePoint

Jacobs. 2020. Colusa Basin Drain Hydraulic Modeling, Final Technical Memorandum. Prepared for Henry Luu, Sites Program Management Team. August 28, 2020. Available: on SharePoint

Kalb, L. and R. Opshal. 2017. Town of Maxwell floods as worry about Oroville Dam shifts to creeks and canals. The Sacramento Bee. Available: https://www.sacbee.com/news/weather/article133701629.html Copyright protected. See introduction for more information.

National Marine Fisheries Service. 2016. Endangered Species Act Section 7(a)(2) Biological Opinion and Magnuson-Stevens Fishery Conservation and Management Act Essential Fish Habitat Response and Fish and Wildlife Coordination Act Recommendations for Relicensing the Oroville Facilities Hydroelectric Project, Butte County California (FERC Project No. 2100-134). (Oroville Facilities Biological Opinion). Available: https://repository.library.noaa.gov/view/noaa/27563 Available: on SharePoint

National Oceanographic and Atmospheric Administration. 2021. California Nevada River Forecast Center. Sacramento River–Bend Bridge. Available: https://www.cnrfc.noaa.gov/graphicalRVF.php?id=BDBC1 Available: on SharePoint

Northwest Hydraulic Consultants (NHC). 2006. North Delta Sedimentation Study. March. West Sacramento, CA. Prepared for California Department of Water Resources. Available: on SharePoint.

Serna, J. 2017. Shasta Dam makes history as water flows from top gates for first time in 20 years. Los Angeles Times. Available: https://www.latimes.com/local/lanow/la-me-shasta-reservoir-water-release-20170223-story.html  Copyright protected. See introduction for more information.

Sites Project Authority. 2017. Water Storage Investment Program Application: Physical Benefits Tab–Attachment 1: Flood Control Benefits. August. 2017. Available: on SharePoint.

Solis, N. 2017. Shasta County agencies preparing flooding scenarios. Redding Record Searchlight. Available: https://www.latimes.com/local/lanow/la-me-shasta-reservoir-water-release-20170223-story.html  Copyright protected. See introduction for more information.

State Water Resources Control Board. 2018. Water Quality Control Plan for the San Francisco/Sacramento-San Joaquin Delta Estuary. December 12. Available: https://www.waterboards.ca.gov/plans_policies/docs/2018wqcp.pdf Available: on SharePoint.

U.S. Army Corps of Engineers. 2002. Sacramento and San Joaquin River Basins Comprehensive Study, Technical Studies Documentation. Sacramento District. December. https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/bay_delta_plan/water_quality_control_planning/docs/sjrf_spprtinfo/usace_2002.pdf Available: on SharePoint.

U.S. Army Corps of Engineers. 2009. Sacramento River Flood Control Project (SRFCP). Sacramento District. Available: on SharePoint.

U.S. Bureau of Reclamation. 2014. Shasta Lake Water Resources Investigation Final Environmental Impact Statement. Available: https://www.usbr.gov/mp/nepa/nepa_project_details.php?Project_ID=1915 Available: on SharePoint.

U.S. Bureau of Reclamation. 2015. Coordinated Long Term Operation of the CVP and SWP EIS, Appendix 5A CalSim II and DSM2 Modeling. 

U.S. Bureau of Reclamation. 2016. Central Valley Project (CVP) Water Contractors. Available: https://www.usbr.gov/mp/cvp-water/docs/latest-water-contractors.pdf Available: on SharePoint.

U.S. Bureau of Reclamation. 2021a. Projects & Facilities, Dams. Funks Dam Details. Available: https://www.usbr.gov/projects/index.php?id=139. Available: on SharePoint 

U.S. Bureau of Reclamation. 2021b. Projects & Facilities, Dams. Shasta Dam Details. Available: https://www.usbr.gov/projects/index.php?id=241. Available: on SharePoint 

U.S. Bureau of Reclamation. 2021c. Projects & Facilities, Dams. Folsom Dam Details. Available: https://www.usbr.gov/projects/index.php?id=74. Available: on SharePoint 

U.S. Bureau of Reclamation. 2021d. Projects & Facilities, Dams. Nimbus Dam Overview. Available: https://www.usbr.gov/projects/index.php?id=222.  Available: on SharePoint 

U.S. Bureau of Reclamation and California Department of Water Resources. 2008. North-of-the-Delta Off-Stream Storage Investigation: Plan Formulation Report. Prepared for Reclamation by URS Corporation under Contract 06CS204097A. 353pp. Available: http://s3-us-west-2.amazonaws.com/ucldc-nuxeo-ref-media/6a8b0fb3-c504-48cc-86f4-623d280d0ee0. Available: on SharePoint 

U.S. Bureau of Reclamation and California Department of Water Resources. 2019. Yolo Bypass Salmonid Habitat Restoration and Fish Passage Project, Final Environmental Impact Statement/Environmental Impact Report. State Clearinghouse # 2013032004. May. Available: https://www.usbr.gov/mp/nepa/includes/documentShow.php?Doc_ID=38602. Available: on SharePoint 

U.S. Geological Survey. 1982. Guidelines for Determining Flood Flow Frequency. Bulletin #17B of the Hydrology Subcommittee of the Interagency Advisory Committee on Water Data. Available: https://water.usgs.gov/osw/bulletin17b/dl_flow.pdf. Available: on SharePoint 

U.S. Geological Survey. 2010. Annual Data Report, Basin Schematic. Available: https://ca.water.usgs.gov/data/waterdata/Schematics2010/lake.oroville.pdf. Available: on SharePoint

U.S. Geological Survey. 2021a. National Water Information System, Peak Streamflow for the Nation. Stream gage 11390672 Stone Corral C Nr Sites CA. Available: https://nwis.waterdata.usgs.gov/nwis/peak?site_no=11390672&agency_cd=USGS&format=html. Available: on SharePoint 

U.S. Geological Survey. 2021b. StreamStats, Data-Collection Station Report. Station 11390672 Stone Corral C Nr Sites CA. Available: https://streamstatsags.cr.usgs.gov/gagepages/html/11390672.htm.  Available: on SharePoint 

U.S. Geological Survey. 2021c. StreamStats, Data-Collection Station Report. Station 11378000 SACRAMENTO R NR RED BLUFF CA. Available: https://streamstatsags.cr.usgs.gov/gagepages/html/11378000.htm. Available: on SharePoint 

U.S. Geological Survey. 2021d. National Water Information System, Peak Streamflow for the Nation. Stream gage 11378000 SACRAMENTO R NR RED BLUFF CA. Available: https://nwis.waterdata.usgs.gov/nwis/peak/?site_no=11378000.  Available: on SharePoint 

U.S. Geological Survey. 2021e. StreamStats, Data-Collection Station Report. Station 11389500 SACRAMENTO R A COLUSA CA. Available: https://streamstatsags.cr.usgs.gov/gagepages/html/11389500.htm.  Available: on SharePoint 

U.S. Geological Survey. 2021f. National Water Information System, Peak Streamflow for the Nation. Stream gage 11389500 SACRAMENTO R A COLUSA CA. Available: https://nwis.waterdata.usgs.gov/usa/nwis/peak/?site_no=11389500. Available: on SharePoint  

U.S. Geological Survey. 2021g. StreamStats, Data-Collection Station Report. Station 11390500 SACRAMENTO R BL WILKINS SLOUGH NR GRIMES CA. Available: https://streamstatsags.cr.usgs.gov/gagepages/html/11390500.htm#325.  Available: on SharePoint 

U.S. Geological Survey. 2021h. National Water Information System, Peak Streamflow for the Nation. Stream gage 11390500 SACRAMENTO R BL WILKINS SLOUGH NR GRIMES CA. Available: https://nwis.waterdata.usgs.gov/nwis/peak/?site_no=11390500,  Available: on SharePoint

U.S. Geological Survey. 2021i. StreamStats, Data-Collection Station Report. Station 11425500 SACRAMENTO R A VERONA CA. Available: https://streamstatsags.cr.usgs.gov/gagepages/html/11425500.htm, Available: on SharePoint  

U.S. Geological Survey. 2021j. National Water Information System, Peak Streamflow for the Nation. Stream gage 11425500 SACRAMENTO R A VERONA CA. Available: https://nwis.waterdata.usgs.gov/nwis/peak?site_no=11453000&agency_cd=USGS&format=html.  Available: on SharePoint 

U.S. Geological Survey. 2021k. National Water Information System, Mean Daily Discharge. Stream gage 11391021 FREMONT WEIR SPILL TO YOLO BYPASS NR VERONA CA. Available: https://nwis.waterdata.usgs.gov/nwis/dv?cb_00060=on&format=html&site_no=11391021&referred_module=sw&period=&begin_date=1947-01-01&end_date=1975-09-29.  Available: on SharePoint 

U.S. Geological Survey. 2021l. National Water Information System, Peak Streamflow for the Nation. Stream gage 11453000 YOLO BYPASS NR WOODLAND CA. Available: https://nwis.waterdata.usgs.gov/nwis/peak?site_no=11425500&agency_cd=USGS&format=html.  Available: on SharePoint 

U.S. Geological Survey. 2021m. StreamStats, Data-Collection Station Report. Station 11453000 YOLO BYPASS NR WOODLAND CA. Available: https://streamstatsags.cr.usgs.gov/gagepages/html/11453000.htm.  Available: on SharePoint 

U.S. Geological Survey. 2021n. National Water Information System. Available: https://waterdata.usgs.gov/nwis. Data for flow in the Sacramento River below Wilkins Slough and the Yolo Bypass near Woodland. Available: on SharePoint 

Personal Communication

Rude, Pete. Civil Engineer. Jacobs. April 23, 2021—Smartsheet response re: TRR West emergency releases to Nicole Williams, Project Manager, ICF, Sacramento, CA.

Alpers, C., J.A. Fleck, M. Marvin-DiPasquale, C.A. Striker, M. Stephenson, and H.E. Taylor. 2014. Mercury cycling in agricultural and managed wetlands, Yolo Bypass, California: Spatial and seasonal variations in water quality. Science of the Total Environment 484: 276–287. Available: https://www.researchgate.net/publication/259317851_Mercury_cycling_in_agricultural_and_managed_wetlands_Yolo_Bypass_California_Spatial_and_seasonal_variations_in_water_quality. Available: on SharePoint 

Alpers, C. N., C. Eagles-Smith, C. Foe, S. Klasing, M. C. Marvin-DiPasquale, D. G. Slotton, and L. Windham-Meyers. 2008. Sacramento–San Joaquin Delta Regional Ecosystem Restoration Implementation Plan, Ecosystem Conceptual Model. Mercury. January 24. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/usdoi/spprt_docs/doi_inge_2008.pdf. Available: on SharePoint  

Ayers, R. S., and D. W. Westcot. 1985. Water Quality for Agriculture. FAO Irrigation and Drainage Paper 29 Rev. 1. Available: https://www.waterboards.ca.gov/water_issues/programs/tmdl/records/state_board/1985/ref2648.pdf. 

Azimuth Consulting Group Partnership. 2012. Site C – Clean Energy Project in British Columbia, Canada. Volume 2. Appendix J, Part 1. Mercury Technical Synthesis Report. Prepared for BC Hydro Power and Authority. December. Available: https://iaac-aeic.gc.ca/050/documents_staticpost/63919/85328/Vol2_Appendix_J.pdf. 

Bay Delta Live. 2019. North Delta Food Web Action Fact Sheet. Available: https://www.baydeltalive.com/assets/5c92b61032e1bfd2c6a30d4ee74773aa/application/pdf/North_Delta_Food_Web_Study_Fact_Sheet_06272019.pdf. Available: on SharePoint  

Berg, M., and M. Sutula. 2015. Factors Affecting Growth of Cyanobacteria with Special Emphasis on the Sacramento-San Joaquin Delta. August. Prepared for: The Central Valley Regional Water Quality Control Board and The California Environmental Protection Agency State Water Resources Control Board. Technical Report 869. August 2015. Available: https://amarine.com/wp-content/uploads/2018/01/Cyano_Review_Final.pdf. Available: on SharePoint 

Beutel, M.W. 2003. Hypolimnetic Anoxia and Sediment Oxygen Demand in California Drinking Water Reservoirs. Lake and Reservoir Management 19(3):208-221. Available: on SharePoint. Copyright protected. See introduction for more information.

Bodaly, R.A., Jansen, W.A., Majewski, A.R., Fudge, R.J.P., Strange, N.E., Derksen, A.J., and D.J., and Green, A. 2007. Post-impoundment time course of increased mercury concentrations in fish in hydroelectric reservoirs of northern Manitoba, Canada. Arch. Environ. Contam. Toxicol. 53: 379-389. Available: https://www.researchgate.net/publication/6111455_Postimpoundment_Time_Course_of_Increased_Mercury_Concentrations_in_Fish_in_Hydroelectric_Reservoirs_of_Northern_Manitoba_Canada. Available: on SharePoint 

Bonnema, A. 2014. Quality Assurance Project Plan: A Study of Lakes and Reservoirs with Low Concentrations of Contaminants in Sport Fish. Moss Landing Marine Labs. Prepared for SWAMP BOG. Available: https://www.waterboards.ca.gov/water_issues/programs/swamp/docs/lakes_study/bog_low_conc_qapp_final.pdf. Available: on SharePoint 

Boyer, K. and M. Sutula. 2015. Factors Controlling Submersed and Floating Macrophytes in the Sacramento-San Joaquin Delta. Prepared for Central Valley Regional Water Quality Control Board and California Environmental Protection Agency State Water Resources Control Board. Agreement Number 12-135-250. Southern California Coastal Water Research Project Technical Report 870. Available: https://ftp.sccwrp.org/pub/download/DOCUMENTS/TechnicalReports/870_FactorsControllingSubmersedAndFloatingMacrophytesInSac-SanJoaquinDelta.pdf. Available: on SharePoint 

Brune, G. M. 1953. Trap Efficiency of Reservoirs. June. Transactions, American Geophysical Union 34(3):407–418. Available: on SharePoint. Copyright protected. See introduction for more information.

California Department of Water Resources (DWR). 2021. DSM2: Delta Simulation Model II. Webpage with model information and files available for download. Available: https://water.ca.gov/Library/Modeling-and-Analysis/Bay-Delta-Region-models-and-tools/DeltaSimulation-Model-II. Available: on SharePoint 

California Division of Drinking Water (DDW). 2018. Secondary Drinking Water Standards. Available: https://www.waterboards.ca.gov/drinking_water/certlic/drinkingwater/documents/ddw_secondary_standards.pdf. Available: on SharePoint 

California Division of Drinking Water (DDW). 2020. MCLs, DLRs, PHGs, for Regulated Drinking Water Contaminants. Available: https://www.waterboards.ca.gov/drinking_water/certlic/drinkingwater/documents/mclreview/mcls_dlrs_phgs.pdf. Available: on SharePoint 

California Irrigation Management Information System (CIMIS). 1999. Reference evapotranspiration (ETo) zone map. Available: https://cimis.water.ca.gov/App_Themes/images/etozonemap.jpg. Available: on SharePoint 

Central Valley Regional Water Quality Control Board (Central Valley Board). 2019. Nonpoint Source 319(H) Program Cyanobacteria and Harmful Algal Blooms Evaluation Project Harmful Algal Bloom Primer. November. Available: https://www.waterboards.ca.gov/centralvalley/water_issues/nonpoint_source/harmful_algal_blooms/final_hab_primer.pdf. Available: on SharePoint 

Central Valley Regional Water Quality Control Board. 2018. The Water Quality Control Plan (Basin Plan) for the California Regional Water Quality Control Board, Central Valley Region: The Sacramento River Basin and the San Joaquin River Basin. Fifth Edition. Revised May 2018. Available: on SharePoint

Central Valley Regional Water Quality Control Board. 2010a. Sacramento–San Joaquin Delta Estuary TMDL for Methylmercury. Final Staff Report. April. Prepared by Wood, M., C. Foe, J. Cooke, and L. Stephen. Available online at: https://www.waterboards.ca.gov/rwqcb5/water_issues/tmdl/central_valley_projects/delta_hg/archived_delta_hg_info/april_2010_hg_tmdl_hearing/apr2010_tmdl_staffrpt_final.pdf. Available: on SharePoint.

Central Valley Regional Water Quality Control Board. 2010b. Amendments to the Water Quality Control Plan for the Sacramento River and San Joaquin River Basins for the Control of Methylmercury and Total Mercury in the Sacramento-San Joaquin Delta Estuary. Staff Report. Report prepared by: M. L. Wood, P. Morris, J. Cooke, and S. J. Louie. April 2010. Available: https://www.waterboards.ca.gov/centralvalley/water_issues/tmdl/central_valley_projects/delta_hg/archived_delta_hg_info/april_2010_hg_tmdl_hearing/apr2010_bpa_staffrpt_final.pdf. Available: on SharePoint  

Central Valley Regional Water Quality Control Board. 2002. Upper Sacramento River TMDL for Cadmium, Copper & Zinc. Final Report. April. Available: on SharePoint. Copyright protected. See introduction for more information.

Chu, K.W. and K.L. Chow. 2002. Synergistic toxicity of multiple heavy metals is revealed by a biological assay using a nematode and its transgenic derivative. Aquatic Toxicology 61:53-64. Available: on SharePoint. Copyright protected. See introduction for more information.

Connor, M.S., J.A. Davis, J. Leatherbarrow, B.K. Greenfield, A. Gunther, D. Hardin, T. Mumley, J.J. Oram, C. Werme. 2007. The slow recovery of San Francisco Bay from the legacy of organochlorine pesticides. Environmental Research 105(2007): 87-100. Available: The slow recovery of San Francisco Bay from the legacy of organochlorine pesticides – ScienceDirect. https://www.sfei.org/sites/default/files/biblio_files/Connor_et_al_2007_legacy_pesticides.pdf. Available: on SharePoint 

Conrad, J.L., D. Chapple, E. Bush, E. Hard, J. Caudill, J.D. Madsen, W. Prat, S. Acuna, N. Rasmussen, P. Gilbert, A. Calderaro, and S. Khanna. 2020. Critical Needs for Control of Invasive Aquatic Vegetation in the Sacramento-San Joaquin Delta. Available: https://deltacouncil.ca.gov/pdf/dpiic/meeting-materials/2020-03-02-item-4-aquatic-weeds-paper.pdf. Available: on SharePoint 

Dahm, C.N., A.E. Parker, A.E. Adelson, M.A. Christman, and B.A. Bergamaschi. 2016. Nutrient Dynamics of the Delta: Effects on Primary Producers. San Francisco Estuary and Watershed Science 14(4):1-35. Available: https://escholarship.org/uc/item/1789c0mz. Available: on SharePoint 

Deas, M. L. and C. L. Lowney. 2000. Water Temperature Modeling Review, Central Valley. September. California Water Modeling Forum. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1045%20Bay%20Delta%20Modeling%20Forum%202000.pdf. Available: on SharePoint  

Delta Stewardship Council. 2021. North Bay Aqueduct. Available: https://viewperformance.deltacouncil.ca.gov/pm/north-bay-aqueduct#:~:text=The%20current%20North%20Bay%20Aqueduct,high%2Dquality%20habitat%20for%20listed.  Available: on SharePoint 

Division of Boating and Waterways. 2021. Floating Aquatic Vegetation. Available: https://dbw.parks.ca.gov/?page_id=28995#:~:text=If%20you%20sight%20water%20hyacinth,nearest%20landmark%20of%20the%20sighting. Available: on SharePoint 

Domagalski, J.L. and P.D. Dilaeanis. 2000. Water-Quality Assessment of the Sacramento River Basin, California—Water Quality of Fixed Sites, 1996-1998. U.S. Geological Survey Water-Resources Investigations Report 00-4247. National Water Quality Assessment Program. Available: https://ca.water.usgs.gov/user_projects/sac_nawqa/Publications/WRIR_2000-4247/wrir004247.pdf. Available: on SharePoint 

Dzialowski, A.R., N.C. Lim, P. Liechti, and J. Beury. 2007. Internal Nutrient Recycling in Marion Reservoir. Kansas Biological Survey Report No. 145. October. Available: http://cpcb.ku.edu/media/uploads/work/KBSRept145_Marion.pdf. 

Fafard, P. 2018. How and Why Lakes Stratify and Turn Over: We explain the science behind the phenomena. Available: https://www.iisd.org/ela/blog/commentary/lakes-stratify-turn-explain-science-behind-phenomena/. Available: on SharePoint 

Food and Agriculture Organization of the United Nations (FAO). 1996. Control of Water Pollution from Agriculture – FAO Irrigation and Drainage Paper 55. By E.D. Ongley. Chapter 4: Pesticides as Water Pollutants. Available: http://www.fao.org/3/w2598e/w2598e07.htm#chapter%204:%20pesticides%20as%20water%20pollutants. Available: on SharePoint

Franklin, N.M., J.L Stauber, R.P. Lim, and P. Petocz. 2002. Toxicity of Metal Mixtures to a Tropical Freshwater Alga (Chlorella sp.): The Effect of Interactions between Copper, Cadmium, and Zinc on Metal Cell Binding and Uptake. Environmental Toxicology and Chemistry 21(11):2412-2422. Available: on SharePoint. Copyright protected. See introduction for more information.

Friends of Reservoirs. 2007. Best Management Practices Manual, Chapter 4: Eutrophication. Available: https://www.friendsofreservoirs.com/science/best-management-practices-manual/chapter-4-eutrophication/. Available: on SharePoint 

Gagala, I. and J. Mankiewicz-Boczek. 2012. The Natural Degradation of Microcystins (Cyanobacterial Hepatotoxins) in Fresh Water – the Future of Modern Treatment Systems and Water Quality Improvement. Polish Journal of Environmental Studies 21(5): 1125-1139. Available: https://pdfs.semanticscholar.org/58ad/83ba25a5744edd287df710ba3843b92385b1.pdf. Available: on SharePoint 

Gassel, M., and R.K. Brodberg. 2005. General Protocol for Sport Fish Sampling and Analysis. December. Available: https://oehha.ca.gov/media/downloads/fish/document/fishsamplingprotocol2005.pdf. Available: on SharePoint  

Grabowska, M. and H. Mazur-Marzec. 2014. Vertical distribution of cyanobacteria biomass and cyanotoxin production in the polymictic Siemianowka Dam Reservoir (eastern Poland). Archives of Polish Fisheries 22:41-51. March. Available: https://www.researchgate.net/publication/272559538_Vertical_distribution_of_cyanobacteria_biomass_and_cyanotoxin_production_in_the_polymictic_Siemianowka_Dam_Reservoir_eastern_Poland. Available: on SharePoint 

Graham, J.L., K.A. Loftin, A.C. Ziegler, and M.T. Meyer. 2008. Cyanobacteria in Lakes and Reservoirs: Toxin and Taste-and-Odor Sampling Guidelines. Chapter A7, Section 7.5 of U.S. Geological Survey Techniques of Water-Resources Investigations, Book 7. September. Available: https://www.usgs.gov/publications/chapter-a7-section-75-cyanobacteria-lakes-and-reservoirs-toxin-and-taste-and-odor. Available: on SharePoint

Graham, N.J.D., V.E. Wardlaw, R. Perry and J-Q Jiang. 1998. The significance of algae as trihalomethane precursors. Wat. Sci. Tech. 37(2):83-89. Available: https://www.sciencedirect.com/science/article/abs/pii/S0273122398000134 Available: on SharePoint Copyright protected. See introduction for more information. 

Gunnison, D., R.M. Engler, and W.H. Patrick. 1984. Chemistry and Microbiology of Newly Flooded Soils: Relationship to Reservoir-Water Quality. Abstract. From: Microbial Processes in Reservoirs. December. Available: https://link.springer.com/chapter/10.1007/978-94-009-5514-1_3 Available: on SharePoint. Copyright protected. See introduction for more information.

Hall, B.D., V.L. St. Louis, K.R. Rolfhus, R.A. Bodaly, K.G. Beaty, M.J. Paterson, and K.A. Peech Cherewyk. 2005. Impacts of Reservoir Creation on the Biogeochemical Cycling of Methyl Mercury and Total Mercury in Boreal Upland Forests. Ecosystems 8: 248–266. https://link.springer.com/article/10.1007/s10021-003-0094-3  Available: on SharePoint. Copyright protected. See introduction for more information.

Harke, M.J., M.M. Steffen, C.J Gobler, T.G. Otten, S.W. Wilhelm, S.A. Wood, and H.W. Paerl. 2015. A review of the Global Ecology, Genomics, and Biogeography of the Toxic Cyanobacterium, Microcystis spp. Manuscript. Article for special issue of Harmful Algae on toxic cyanobacteria. Available: http://manuscript.elsevier.com/S1568988315301773/pdf/S1568988315301773.pdf. Available: on SharePoint.

Hogsett, M., H. Li, and R. Goel. 2018. The Role of Internal Nutrient Cycling in a Freshwater Shallow Alkaline Lake. Environmental Engineering Science 36(5). December. https://doi.org/10.1089/ees.2018.0422 Available: on SharePoint. Copyright protected. See introduction for more information.

Integrated Storage Investigations. 2000. North of Delta Offstream Storage Investigation, Draft. Progress Report. February. 

Interagency Working Group on Harmful Algal Bloom Related Illnesses. 2019. Letter to land and water resource managers. June 27. Available: on SharePoint.

Kratzer, C.R., R.H. Kent, D. K Saleh, D.L. Knifong, P.D. Dileanis, and J.L. Orlando. 2011. Trends in Nutrient Concentrations, Loads, and Yields in Streams in the Sacramento, San Joaquin, and Santa Ana Basins, California 1975–2004. National Water-Quality Assessment Program. Scientific Investigation Report 2010–5228. https://pubs.usgs.gov/sir/2010/5228/ Available: on SharePoint.

Lehman, P., K. Marr, G.L. Boyer, S. Acuna, and S.J. Teh. 2013. Long-term trends and causal factors associated with Microcystis abundance and toxicity in San Francisco Estuary and implications for climate change impacts. Hydrobiologica 718: 141-158. Available: on SharePoint. Copyright protected. See introduction for more information.

Maavara, T., Q. Chen, K. Van Meter, L.E. Brown, J. Zhang, J. Ni, and C. Zarfl. 2020. River dam impacts on biogeochemical cycling. Nature Reviews Earth & Environment 1:103-116. Available: on SharePoint. Copyright protected. See introduction for more information.

Maguire, A., C. Stuart, M. Bedwell, B. Davis, and J. Frantzich. 2020. North Delta Flow Action 2019: Continuous Water Quality Monitoring in the Yolo Bypass. Poster presentation at 2020 Interagency Ecological Program Workshop. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=182044. Miller, A., C. Russell, and M. Wiens. 2017. Irrigating Food Crops with Water Containing Cyanobacteria Blooms. October. National Collaborating Centre for Environmental Health. Available: on SharePoint. Copyright protected. See introduction for more information.

Murphy, T., K. Phan, E. Yumvihoze, K. Irvine, K. Wilson, D. Lean, A. Poulain, B. Laird, and L.H.M. Chan. 2018a. Effects of arsenic, iron and fertilizers in soil on rice in Cambodia. Journal of Health & Pollution 8(19): 12pp. Available: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6257173/. Available: on SharePoint.

Murphy, T., K. Phan, E. Yumvihoze, K. Irvine, K. Wilson, D. Lean, B. Ty, A. Poulain, B. Laird, and L.H.M. Chan. 2018b. Groundwater irrigation and arsenic speciation in rice in Cambodia. Journal of Health & Pollution 8(19): 9pp. Available: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6257176/. Available: on SharePoint.

National Academies Press. 2014. Bridge stormwater runoff analysis and treatment options. Available: https://www.nap.edu/catalog/22395/bridge-stormwater-runoff-analysis-and-treatment-options. Available: on SharePoint.

National Oceanic and Atmospheric Administration. 2020. What is nutrient pollution? Available: https://oceanservice.noaa.gov/facts/nutpollution.html. Available: on SharePoint.

National Oceanic and Atmospheric Administration. n.d. Harmful Algal Blooms: Tiny Organisms with a Toxic Punch. Available: https://oceanservice.noaa.gov/hazards/hab/. Available: on SharePoint.

Office of Environmental Health Hazard Assessment. 2012. Toxicological Summary and Suggested Action Levels to Reduce Potential Adverse Health Effects of Six Cyanotoxins. May. Available: on SharePoint.

Open Water Mercury Modeling Workgroup. 2020. Mercury Open Water Final Report for Compliance with the Delta Mercury Control Program. Chapter 5. Delta-Mercury and Methylmercury Modeling Studies. August 31. Available: https://deltacouncil.ca.gov/pdf/science-program/2020-08-31-open-water-workgroup-chapter-5.pdf. Available: on SharePoint.

Orlando, J.L., De Parsia, M., Sanders, C., Hladik, M., and Frantzich, J. 2020. Pesticide concentrations associated with augmented flow pulses in the Yolo Bypass and Cache Slough Complex, California: U.S. Geological Survey Open-File Report 2020–1076, 101 p., https://doi.org/10.3133/ofr20201076. Available: on SharePoint. Copyright protected. See introduction for more information.

Sacramento Regional Wastewater Treatment Plant. n.d. Echo Water Project. Available: https://www.regionalsan.com/echowater-project. 

San Francisco Bay Regional Water Quality Control Board. 2008. Total Maximum Daily Load for PCBs in San Francisco Bay. Final Staff Report for Proposed Basin Plan Amendment. February 13. Available: https://www.waterboards.ca.gov/sanfranciscobay/water_issues/programs/TMDLs/sfbaypcbs/PCBs%20TMDL%20Final%20Staff%20Report%20April2017.pdf. Available: on SharePoint.

Schemel, L.E., M.H. Cox, S.W. Hager, and T.R. Sommer. 2002. Hydrology and Chemistry of Floodwaters in the Yolo Bypass, Sacramento River System, California, During 2000. U.S. Geological Survey Water Resources Investigation Report 02-4202. September. Available: https://pubs.usgs.gov/wri/wri02-4202/WRI02-4202.pdf. Available: on SharePoint.

Sites Project Authority and U.S. Department of the Interior, Bureau of Reclamation. 2017. Sites Reservoir Project Draft Environmental Impact Report/Environmental Impact Statement. August 2017. Available: on SharePoint.

Sites Project Authority. 2021. Final HC Constructability Technical Memorandum. Prepared by Jacobs, Geosyntec, and Vanderwell. April 19. Available: on SharePoint.

Slotton, D.G., J.E. Reuter, and C.R. Goldman. 1995. Mercury uptake patterns of biota in a seasonally anoxic Northern California reservoir. Water, Air, and Soil Pollution 80: 841-850. https://link.springer.com/article/10.1007/BF01189735 Available: on SharePoint.

Starr Consulting, Palencia Consulting Engineers, and Rincon. 2020. Sacramento River Watershed Sanitary Survey 2020 Update Report. December. Available: on SharePoint. Copyright protected. See introduction for more information

State Water Resources Control Board (State Water Board). 2021a. Surface water freshwater harmful algal blooms dataset. From: Surface Water – Freshwater Harmful Algal Blooms. California Open Data Portal, Freshwater Harmful Algal Bloom Reports database. Available: https://data.ca.gov/dataset/surface-water-freshwater-harmful-algal-blooms. Available: on SharePoint. Copyright protected. See introduction for more information

State Water Resources Control Board (SWRCB). 2021b. Water Quality Goals Database. Available: https://public3.waterboards.ca.gov/wqgapps/. Accessed Tables for multiple metals and determined standards by assuming hardness = 50 mg/L. Cadmium – Table 20: https://public3.waterboards.ca.gov/wqgapps/wq_docs/20.xls Chromium III – Table 22: https://public3.waterboards.ca.gov/wqgapps/wq_docs/22.xls Copper – Table 23: https://public3.waterboards.ca.gov/wqgapps/wq_docs/23.xls Lead – Table 24: https://public3.waterboards.ca.gov/wqgapps/wq_docs/24.xls Nickel – Table 25: https://public3.waterboards.ca.gov/wqgapps/wq_docs/25.xls Zinc – Table 30. https://public3.waterboards.ca.gov/wqgapps/wq_docs/30.xls  

State Water Resources Control Board (State Water Board). 2020. Nitrates and Nitrites in Drinking Water. Available: https://www.waterboards.ca.gov/drinking_water/certlic/drinkingwater/Nitrate.html. Available: on SharePoint.

State Water Resources Control Board. 2018. Water Quality Control Plan for the San Francisco/Sacramento-San Joaquin Delta Estuary. December 12. Available: https://www.waterboards.ca.gov/plans_policies/docs/2018wqcp.pdf. Available: on SharePoint.

State Water Resources Control Board (SWRCB). 2017a. Final Part 2 of the Water Quality Control Plan for Inland Surface Waters, Enclosed Bays, and Estuaries of California – Tribal and Subsistence Fishing Beneficial Uses and Mercury Provisions. Available: https://www.waterboards.ca.gov/water_issues/programs/mercury/docs/hg_lang_final.pdf Available: on SharePoint.

State Water Resources Control Board (SWRCB). 2017b. Draft Staff Report for Scientific Peer Review for the Amendment to the Water Quality Control Plan for Inland Surface Waters, Enclosed Bays, and Estuaries of California, Mercury Reservoir Provisions – Mercury TMDL and Implementation Program for Reservoirs. April. Available: https://www.waterboards.ca.gov/water_issues/programs/mercury/reservoirs/docs/peer_review/02_staff_report_scientific_peer_review.pdf. Available: on SharePoint.

State Water Resources Control Board (State Water Board). 2016. California Freshwater Harmful Algal Blooms Assessment and Support Strategy. Prepared by B. Anderson-Abbs, M. Howard, K Taberski, and K. Worcester. SWAMP-SP-2016-0001. Available: on SharePoint.

Ta, J., L.W.J. Anderson, M.A. Christman, S. Khanna, D. Kratville, J.D. Madsen, P.J. Moran, and J.H. Viers. 2017. Invasive Aquatic Vegetation Management in the Sacramento–San Joaquin River Delta: Status and Recommendations. San Francisco Estuary and Watershed Science 15(4):1-19. https://doi.org/10.15447/sfews.2017v15iss4art5 Available: on SharePoint. Copyright protected. See introduction for more information

Tetra Tech. 2006a. Conceptual Model for Nutrients in the Central Valley and Sacramento-San Joaquin Delta. Final Report. September 20. Prepared for U.S. EPA Region IX and Central Valley Drinking Water Policy. https://www.waterboards.ca.gov/centralvalley/water_issues/drinking_water_policy/final_nutrient_report_lowres.pdf Available: on SharePoint.

Tetra Tech. 2006b. Conceptual Model for Organic Carbon in the Central Valley and Sacramento-San Joaquin Delta. Final Report. April 14. Prepared for U.S. EPA Region IX and Central Valley Drinking Water Policy Workgroup. Available: https://www.waterboards.ca.gov/centralvalley/water_issues/drinking_water_policy/oc_model_final.pdf. Available: on SharePoint.

U.S. Environmental Protection Agency. 1980. Ambient Water Quality for Silver. Available: https://www.epa.gov/sites/production/files/2019-03/documents/ambient-wqc-silver-1980.pdf. Available: on SharePoint.

U.S. Environmental Protection Agency. 1986. Quality Criteria for Water 1986 (the “Gold Book”). Available: https://www.epa.gov/sites/production/files/2018-10/documents/quality-criteria-water-1986.pdf. Available: on SharePoint.

U.S. Environmental Protection Agency. 2008. Problem formulation for the environmental fate and ecological risk, endangered species and drinking water assessments in support of the registration review of diazinon. Available: https://www3.epa.gov/pesticides/chem_search/cleared_reviews/csr_PC-057801_26-Mar-08_a.pdf Available: on SharePoint. 

U.S. Environmental Protection Agency. 2016. Aquatic Life Ambient Water Quality Criterion for Selenium – Freshwater. Available: https://www.epa.gov/sites/production/files/2016-07/documents/aquatic_life_awqc_for_selenium_-_freshwater_2016.pdf. Available: on SharePoint.

U.S. Environmental Protection Agency. 2018. Final Aquatic Life Ambient Water Quality Criteria for Aluminum. Available: https://www.epa.gov/sites/production/files/2018-12/documents/aluminum-final-national-recommended-awqc.pdf. Available: on SharePoint. 

U.S. Environmental Protection Agency. 2020a. Learn about Cyanobacteria and Cyanotoxins. Available: https://www.epa.gov/cyanohabs/learn-about-cyanobacteria-and-cyanotoxins. Available: on SharePoint.

U.S. Environmental Protection Agency (USEPA). 2020b. National Recommended Water Quality Criteria – Aquatic Life Criteria Table. Available: https://www.epa.gov/wqc/national-recommended-water-quality-criteria-aquatic-life-criteria-table. Available: on SharePoint.

U.S. Environmental Protection Agency. 2010. Comprehensive Disinfectants and Disinfection Byproducts Rules (Stage 1 and Stage 2): Quick Reference Guide. Available: https://nepis.epa.gov/Exe/ZyPDF.cgi?Dockey=P100C8XW.txt. Available: on SharePoint.

U.S. Environmental Protection Agency. 2000. Water Quality Standards; Establishment of Numeric Criteria for Priority Toxic Pollutants for the State of California; Rule. U.S. Environmental Protection Agency (USEPA). Code of Federal Regulations, Title 40, Part 131, Section 38. In Federal Register: May 18, 2000 (Volume 65, No. 97), Rules and Regulations, pp. 31681-31719. https://www.epa.gov/wqs-tech/water-quality-standards-establishment-numeric-criteria-priority-toxic-pollutants-state Available: on SharePoint.

U.S. Environmental Protection Agency. 1998. National Strategy for the Development of Regional Nutrient Criteria. Available: https://www.epa.gov/sites/production/files/2018-10/documents/nutrient-strategy-1998.pdf. Available: on SharePoint.

U.S. Geological Survey. 2000. Water-Quality Assessment of the Sacramento River Basin, California: Water-Quality, Sediment and Tissue Chemistry, and Biological Data, 1995-1998. Open-File Report 2000-391. Available: on SharePoint.

U.S. Geological Survey. 1915. Springs of California. Water Supply Paper 338. By G.A. Waring. https://doi.org/10.3133/wsp338 Available: on SharePoint. Copyright protected. See introduction for more information

Walker, W.W., Jr. 1983. Significance of eutrophication in water supply reservoirs. Journal AWWA pp. 38-42. Available: http://www.wwwalker.net/pdf/awwa.pdf. Available: on SharePoint.

Watts, W.L. 1894. The Gas and Petroleum Yielding Formations of the Central Valley of California. California State Mining Bureau. Bulletin No. 3. Available: https://books.google.com/books/about/The_Gas_and_Petroleum_Yielding_Formation.html?id=ysRMAAAAMAAJ. Available: on SharePoint. Copyright protected. See introduction for more information

Wiener, J. G., C. C. Gilmour, and D. P. Krabbenhoft. 2003. Mercury Strategy for the Bay-Delta Ecosystem: A Unifying Framework for Science, Adaptive Management, and Ecological Restoration. Final Report to the California Bay-Delta Authority. https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&ved=2ahUKEwiputrIoLKAAxUHJzQIHZEIATMQFnoECA4QAQ&url=https%3A%2F%2Fnrm.dfg.ca.gov%2FFileHandler.ashx%3FDocumentID%3D4071&usg=AOvVaw2p-UJKVIb6FJO5Z61QqZAw&cshid=1690576702442863&opi=89978449 Available: on SharePoint.

Wildman, R.A. 2016. Mercury and methylmercury in a reservoir during seasonal variation in hydrology and circulation. Lake and Reservoir Management 32:89–100. https://doi.org/10.1080/10402381.2015.1133740 Available: on SharePoint.

Wilkinson, A.A., M. Hondzo, and M. Guala. 2020. Vertical heterogeneities of cyanobacteria and microcystin concentrations in lakes using a seasonal In situ monitoring station. Global Ecology and Conservation 21. https://www.sciencedirect.com/science/article/pii/S2351989419305244 Available: on SharePoint.

Yolo County. 2014. Yolo Bypass Drainage and Water Infrastructure Improvement Study. Final Report. Prepared by Yolo Bypass Foundations, cbec, inc., Consero Solutions, and Douglas Environmental. April. Available: https://www.yolocounty.org/home/showdocument?id=23985. Available: on SharePoint.

Personal Communication

Davis, Brittany E., PhD. Environmental Program Manager. California Department of Water Resources. July 6, 2021—Email to John Spranza, Integration Environmental Permitting Lead, HDR, Inc., Sacramento, CA. Available: on SharePoint.

AECOM. 2020. Geology and Seismicity Technical Memorandum. August 18. Sites Program Management Team. Available: on SharePoint.

Brown, C.J. 2000. North of the Delta Offstream Storage Investigation, Progress Report, Appendix D: Fish Survey Summary. September. Prepared for the California Department of Fish and Game with the assistance of Waiman Yip, California Department of Water Resources. https://www.google.com/url?sa=t&rct=j&q=&esrc=s&source=web&cd=&ved=2ahUKEwj71_LrobKAAxXWBTQIHU5TD_8QFnoECA4QAQ&url=https%3A%2F%2Fnrm.dfg.ca.gov%2FFileHandler.ashx%3FDocumentID%3D32808&usg=AOvVaw2K9TxoohCEWu-BICe9zewo&opi=89978449 Available: on SharePoint.

California Resources Agency. 2003. SB 1086, Sacramento River Conservation Area Forum Handbook. September. Prepared for The Resources Agency, State of California by the Sacramento River Advisory Council under Senate Bill 1086, authored by Senator Jim Nielsen. https://www.sacramentoriver.org/forum/index.php?id=handbook Available: on SharePoint.

2008. T. Harvey & Associates, G. Mathias Kondolf, Geomorph, and Blankinship & Associates. 2008. Colusa Basin Watershed Assessment. December. Prepared for Colusa County Resource Conservation District. Available: on SharePoint.

Northwest Hydraulic Consultants. 2010. Comprehensive Geomorphic and Sedimentation Analyses of Lower Sacramento River for Flood Management, Erosion Mitigation and Habitat Enhancement Design. Proceedings from the 2nd Joint Federal Interagency Conference, June 27–July 1, 2010, Las Vegas, NV. https://acwi.gov/sos/pubs/2ndJFIC/Contents/7D_Hall%20_2-26_10.pdf Available: on SharePoint.

Soil Survey Staff. 2020. Web Soil Survey. Natural Resources Conservation Service, United States Department of Agriculture. Available: https://websoilsurvey.sc.egov.usda.gov/App/HomePage.htm. Available: on SharePoint.

Takata, L., T. R. Sommer, J. L. Conrad, and B. M. Schreier. 2017. Rearing and migration of juvenile Chinook salmon (Oncorhynchus tshawytscha) in a large river floodplain. Environmental Biology of Fishes 100(9): 1105–-1120. https://link.springer.com/article/10.1007/s10641-017-0631-0 Available: on SharePoint.

Water Engineering & Technology. 1990. Geomorphic Analysis and Bank Protection Alternatives Report for Sacramento River (RM 78–194) and Feather River (RM 0–28). May. Fort Collins, CO. Prepared for U.S. Army Corps of Engineers, Sacramento District, Sacramento, CA. Available: on SharePoint.

Wilcock, P.R. and J.C. Crowe. 2003. Surface-Based Transport Model for Mixed-Size Sediment. Journal of Hydraulic Engineering 129(2):120-128. https://ascelibrary.org/doi/10.1061/%28ASCE%290733-9429%282003%29129%3A2%28120%29 Available: on SharePoint. Copyright protected. See introduction for more information

Antone, G., Madea, L., Bethurem, N., Brown J., Fullton, A., Lawrence S., Staton K., Spangler D., Ehorn B., McManus D., Hull R., 2012. Coordinated AB 3030 Groundwater Management Plan 2012. Prepared for Tehama County Flood Control & Water Conservation District Board of Directors. Available: on SharePoint 

California Department of Water Resources. 2007. NODOS GW Quality Study Data. Unpublished Raw Water Quality Data. Northern Region Office, Red Bluff, CA. Available: on SharePoint

California Department of Water Resources. 2019. Sustainable Groundwater Management Act (SGMA) Basin Prioritization Data. Colusa, Red Bluff, and Yolo subbasins. Available: https://data.cnra.ca.gov/dataset/sgma-basin-prioritization. Available: on SharePoint

California Department of Water Resources. 2020a. California’s Groundwater. Bulletin 118-03. Antelope Creek and Funks Creek Basins; Colusa, Red Bluff and Yolo Subbasins. Available: https://water.ca.gov/Programs/Groundwater-Management/Bulletin-118. Available: on SharePoint 

California Department of Water Resources. 2020b. Well Completion Reports Map Application. Colusa, Red Bluff and Yolo Subbasins. https://dwr.maps.arcgis.com/apps/webappviewer/index.html?id=181078580a214c0986e2da28f8623b37. Available: on SharePoint

California Water Boards. 2020. Groundwater Ambient Monitoring and Assessment Program (GAMA). Groundwater Information System. Colusa, Red Bluff and Yolo Subbasins. Available: https://gamagroundwater.waterboards.ca.gov/gama/gamamap/public/. Available: on SharePoint

Dudley, T. 2000. Basin Management Objective (BMO) Method of Groundwater Basin Management. Version 1.02. Available: https://www.countyofglenn.net/sites/default/files/Water_Advisory_Committee/BMOConcept.pdf - :~:text=The%20Basin%20Management%20Objective%2C%20or%20BMO%2C%20concept%20was,Glenn%20County%20in%20developing%20their%20groundwater%20management%20ordinance.. Available: on SharePoint

Ekmekci, M. 1990. Impact of Quarries on Karst groundwater Systems. Proceedings of the Antalya Symposium and Field Seminar, October 1990. Available: https://digitalcommons.usf.edu/cgi/viewcontent.cgi?article=3616&context=kip_articles. Available: on SharePoint 

Fahey, M. 2012. Colusa Basin Watershed Management Plan. December 2012. Prepared by the Colusa County Resource Conservation District. Available: https://data.sacriver.org/assets/06942155460a79991fdf1b57f641b1b4/application/pdf/Colusa_Basin_Watershed_Management_Plan_2012.pdf. Available: on SharePoint

Glenn County Water Advisory Committee. 2001. Basin Management Objective (BMO) For Groundwater Surface Elevations in Glenn County, California. August 21, 2001. Prepared for the Glenn County Board of Supervisors. Available: https://www.countyofglenn.net/sites/default/files/Water_Advisory_Committee/GlennCoBMOdocument.pdf. Available: on SharePoint 

Green, J., Pavlish, J., Leete, J., and Alexander, Jr., E. 2003. Quarrying Impacts on Groundwater Flow Paths. Sinkholes and the Engineering and Environmental Impacts of Karst: pp. 216-222. Proceedings of the Ninth Multidisciplinary Conference on Sinkholes and the Engineering and Environmental Impacts of Karst, held in Huntsville, Alabama, September 6-10, 2003. Available: https://conservancy.umn.edu/bitstream/handle/11299/188252/Quarrying impacts on groundwater flow paths_9th sinkhole conference proceedings.pdf?sequence=1&isAllowed=y. Available: on SharePoint

New South Wales Government Department of Primary Industries. 2005. How Salinity is Measured. Available: https://www.dpi.nsw.gov.au/agriculture/soils/more-information/salinity/general-information/measuring - :~:text=Water%20and%20soil%20salinity%20are%20measured%20by%20passing,by%20the%20concentration%20and%20composition%20of%20dissolved%20salts.. Available: on SharePoint 

Sites Project Authority and Bureau of Reclamation. 2017. Sites Reservoir Project Draft EIR/EIS, Chapter 10, Groundwater Resources. Available: https://usbr.gov/mp/nepa/includes/documentShow.php?Doc_ID=29801. Available: on SharePoint

The Nature Conservancy. 2020. Colusa Multi-Benefit Groundwater Recharge: Project Area. Prepared for Colusa Groundwater Authority. August 21, 2020 Available: https://www.vinagsa.org/files/dc00c7f7e/4b_2020_08_14_Colusa+MB+Program_Expanded+Project+Area_August_2020.pdf. Available: on SharePoint

Yolo County Flood Control and Water Conservation District. 2006. Groundwater Management Plan. Final. June 2006. Available: http://www.ycfcwcd.org/documents/gwmp2006final.pdf. Available: on SharePoint

Baldwin, B. G., D. H. Goldman, D. J. Keil, R. Patterson, T. J. Rosatti, and D. H. Wilken (eds). 2012. The Jepson Manual: Vascular Plants of California, second edition, revised. Berkeley, CA: University of California Press. Copyright protected. See introduction for more information.

Calflora. 2021. Information on California plants for education, research, and conservation. Search for Cal-IPC Invasive Plant Species. Available: http://www.calflora.org/. Available: on SharePoint

California Department of Fish and Game. 2008. Land Management Plan for the Yolo Bypass Wildlife Area. Final. June 2008. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=84924&inline. Available: on SharePoint

California Department of Fish and Wildlife. 2018. Protocols for Surveying and Evaluating Impacts to Special Status Native Plant Populations and Sensitive Natural Communities. March 20. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=18959&inline. Available on: SharePoint

California Department of Fish and Wildlife. 2020. California Sensitive Natural Communities. Last revised: September 9, 2020. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=153609&inline. Available: on SharePoint

California Department of Fish and Wildlife. 2021. California Natural Diversity Database, RareFind 5, January 13, 2021 [43 Quadrangles: Balls Ferry, Bend, Bird Valley, Black Butte Dam, Dunnigan, Eldorado Bend, Foster Island, Fruto NE, Gerber, Gilmore Peak, Glenn, Hamilton City, Hough Springs, Kirkville, Kirkwood, Knights Landing, Leesville, Lodoga, Logandale, Los Molinos, Manor Slough, Maxwell, Meridian, Moulton Weir, Nord, Ord Ferry, Orland, Panther Spring, Princeton, Rail Canyon, Red Bank, Red Bluff East, Red Bluff West, Sites, Stone Valley, Sutter Causeway, Taylor Monument, Tuscan Springs, West of Gerber, Wildwood School, Williams, Willows, Zamora]. Available: https://apps.wildlife.ca.gov/rarefind/view/RareFind.aspx.  Copyright protected. See introduction for more information.

California Department of Water Resources. 2000a. North-of-Delta Offstream Storage Investigation Progress Report. January 4. Available: on SharePoint

California Department of Water Resources. 2000b. North-of-Delta Offstream Storage Investigation Progress Report Appendix B: Wetland Delineation Field Studies Report. April. Available: on SharePoint

California Invasive Plant Council. 2021. Inventory of Invasive Plant Species of California. Last revised: February 1, 2017. Available:  https://www.cnps.org/rare-plants/cnps-inventory-of-rare-plants. Available: on SharePoint

California Native Plant Society, Rare Plant Program. 2020. Inventory of Rare and Endangered Plants of California (online edition, v8-03 0.39). Quadrangles searched: 4012242, 4012232, 4012222, 4012212, 4012223, 4012213, 4012214, 4012221, 4012211, 4012127, 3812271, 3812188, 3812177, 3812178, 3812281, 3812187, 3912117, 3912127, 3912128, 3912126, 3912273, 3912271, 3912272, 3912263, 3912262, 3912261, 3912252, 3912251, 3912242, 3912253, 3912241, 3912231, 3912232, 3912233, 3912244, 3912234, 3912224, 3912223, 3912222, 3912168, 3912178, 3912116, and 3812176. Available: http://www.rareplants.cnps.org. Available: on SharePoint

Colusa County. 2012. Colusa County General Plan, Conservation Element. Available: https://countyofcolusa.org/DocumentCenter/View/2722/Conservation-Element_Colusa_Final?bidId=. Available: on SharePoint

County of Yolo. 2009. 2030 Countywide General Plan, Conservation and Open Space Element. Adopted November 2009, Resolution No 09-189. Available: https://www.yolocounty.org/home/showpublisheddocument?id=8005. Available: on SharePoint

Glenn County. 2020. Glenn County General Plan Update Existing Conditions Report. Available: https://static1.squarespace.com/static/5c8a73469b7d1510bee16785/t/5e556b56c253f84cdc287783/1582656403698/GlennCounty-ECR-Final-Feb2020.pdf. Available: on SharePoint

Hill, S. R. 2015. Sidalcea keckii. Flora of North America. Available: http://www.efloras.org/florataxon.aspx?flora_id=1&taxon_id=250101137. Available: on SharePoint

Natural Resources Conservation Service. 2006. Soil Survey of Colusa County, California. USDA, in cooperation with Colusa County Resource Conservation District; State of California, Department of Conservation; Regents of the University of California; United States Department of Agriculture, Forest Service; and United States Department of the Interior, Bureau of Land Management and Fish and Wildlife Service. Available:. Available: on SharePoint

Natural Resources Conservation Service. 2020a. Soil Survey Geographic (SSURGO) Database for Colusa and Glenn counties, California [Online]. U.S. Department of Agriculture. Available: https://websoilsurvey.sc.egov.usda.gov/App/WebSoilSurvey.aspx. Available: on SharePoint

Natural Resources Conservation Service. 2020b. Climate Data for Colusa, California. Available: http://agacis.rcc-acis.org/?fips=06011 and http://agacis.rcc-acis.org/?fips=06021. Available: on SharePoint

Natural Resources Conservation Service. 2020c. Climate Data for Stony Gorge, California. Available: http://agacis.rcc-acis.org/?fips=06011 and http://agacis.rcc-acis.org/?fips=06021. Available: on SharePoint

Sites Project Authority and U.S. Bureau of Reclamation 2017. Sites Reservoir Project Draft Environmental Impact Report/Environmental Impact Statement. August 2017. Available: https://sitesproject.org/environmental-review/draft-environmental-impact-report-environmental-impact-statement/. Available: on SharePoint

Tehama County. 2009. Tehama County General Plan. March. Available: https://www.co.tehama.ca.us/images/stories/planning/2009-2029%20Tehama%20County%20General%20Plan%20r1.pdf. Available: on SharePoint

U.S. Army Corps of Engineers. 2015. Final 2015 Regional Compensatory Mitigation and Monitoring Guidelines for South Pacific Division USACE. Final January 12, 2015. Available: https://www.spd.usace.army.mil/Portals/13/docs/regulatory/mitigation/MitMon.pdf. Available: on SharePoint

U.S. Fish and Wildlife Service. 2021. Information for Planning and Consultation (IPaC). List of threatened and endangered species that may occur in the proposed project, and/or may be affected by the proposed project. (Consultation Code 08ESMF00-2021-SLI-0961.) Available: on SharePoint

U.S. Geological Survey. 2020. Science in Your Watershed, Locate Your Watershed. Hydrological Unit Code 18020104. Available: https://water.usgs.gov/wsc/cat/18020104.html. Last Updated: July 17, 2020. Available: on SharePoint

Yolo Habitat Conservancy. 2018. Yolo Habitat Conservation Plan/Natural Community Conservation Plan. Final. April 2018. Available: https://nrm.dfg.ca.gov/filehandler.ashx?documentid=164158&inline. Available: on SharePoint

Personal Communication

Davis, Brittany E., PhD. Environmental Program Manager. California Department of Water Resources. July 6, 2021—Email to John Spranza, Senior Ecologist/Regulatory Specialist, HDR, Sacramento, CA, and Mallory Bedwell, California Department of Water Resources.

Agronomy Research and Information Center. 2021. Wildlife & Alfalfa, A Natural Partnership. Regents of the University of California, Division of Agriculture and Natural Resources. Available: on Sharepoint

Ahl, J. S. B. 1991. Factors Affecting Contributions of the Tadpole Shrimp, Lepidurus Packardi, to Its Oversummering Egg Reserves. Hydrobiologia 212:137–143. Available: on SharePoint. Copyright protected. See introduction for more information

Alvarez, J. A. 2004. Rana aurora draytonii (California Red-Legged Frog) Microhabitat. Herpetological Review 32(2):162–163. Available: on SharePoint. Copyright protected. See introduction for more information

Andres, B. A., and K. L. Stone. 2009. Conservation Plan for the Mountain Plover (Charadrius montanus), Version 1.0. Manomet Center for Conservation Sciences. Manomet, MA. Available: https://www.nrc.gov/docs/ML1302/ML13022A455.pdf. Available: on SharePoint

Anthony, R. G., R. L. Knight, G. T. Allen, B. R. McClelland, and J. L. Hodges. 1982. Habitat Use by Nesting and Roosting Bald Eagles in the Pacific Northwest. Transactions of the North American Wildlife and Natural Resources Conference 47:332–342. Available: https://digitalcommons.unl.edu/cgi/viewcontent.cgi?article=1033&context=usfwspubs. Available: on SharePoint

Avian Power Line Interaction Committee. 2012. Reducing Avian Collisions with Power Lines: The State of the Art in 2012. Edison Electric Institute and APLIC. Washington, D.C. Available: https://www.resolutionmineeis.us/sites/default/files/references/avian-power-line-2012.pdf. Available: on SharePoint

Bank Swallow Technical Advisory Committee. 2013. Bank Swallow (Riparia riparia) Conservation Strategy for the Sacramento River Watershed, California. Version 1.0. Available: on SharePoint

Barr, C. B. 1991. The Distribution, Habitat, and Status of the Valley Elderberry Longhorn Beetle Desmocerus californicus dimorphus Fisher (Insecta: Coleoptera: Cerambycidae). U.S. Fish and Wildlife Service; Sacramento, California. 134 pp. Available: on SharePoint

Bechard, M. J., C. S. Houston, J. H. Saransola, and A. S. England. 2020. Swainson's Hawk (Buteo swainsoni), version 1.0. In Birds of the World (A. F. Poole, Editor). Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.swahaw.01. Available: on SharePoint Copyright protected. See introduction for more information

Beedy, E. C., W. J. Hamilton, III, R. J. Meese, D. A. Airola, and P. Pyle. 2020. Tricolored Blackbird (Agelaius tricolor), version 1.0. In Birds of the World (P. G. Rodewald, Editor). Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.tribla.01. Available: on SharePoint Copyright protected. See introduction for more information

Beedy, E. C. and W. J. Hamilton III. 1997. Tricolored Blackbird Status Update and Management Guidelines. Jones & Stokes Assoc. Inc., Sacramento CA, Rep. 97-099. Prepared for U.S. Fish and Wildlife Service, Sacramento CA, and California Department of Fish and Game, Sacramento, CA. Available: on SharePoint

Brode, J. M., and R. B. Bury. 1984. The Importance of Riparian Systems to Amphibians and Reptiles. Pages 30–36 in R. E. Warner and K. M. Hendrix (eds.), California Riparian Systems Ecology, Conservation, and Productive Management. Berkeley: University of California Press. Available: on SharePoint. Copyright protected. See introduction for more information

Brown, C. and W. Yip. 2000. North of the Delta Offstream Storage Investigation Progress Report Appendix E: Amphibian and Reptile Survey Summary. April. CALFED Bay-Delta Program. Available: on SharePoint

Buehler, D. A. 2020. Bald Eagle (Haliaeetus leucocephalus), version 1.0. In Birds of the World (A. F. Poole and F. B. Gill, Editors). Introduction, Habitat, Diet and Foraging, and Breeding. Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.baleag.01. Available: on SharePoint Copyright protected. See introduction for more information

California Department of Fish and Game. 1992 Annual Report on the Status of California State-Listed Threatened and Endangered Animals and Plants. Sacramento, CA. Copyright protected. See introduction for more information

California Department of Fish and Game. 1995. Five-Year Status Review: Bank Swallow (Riparia riparia). Prepared for the California Fish and Game Commission. Sacramento, California. Available: https://www.sacramentoriver.org/bans/bans_lib/Five-year Status Review - Bank Swallow (DFG 1995).pdf. Available: on SharePoint

California Department of Fish and Game. 2005. California Wildlife Habitat Relationships System. White-tailed Kite Life History Account. California Interagency Wildlife Task Group. October. Available: https://www.wildlife.ca.gov/Data/CWHR/Life-History-and-Range. Available: on SharePoint

California Department of Fish and Game. 2008. Final Land Management Plan for the Yolo Bypass Wildlife Area. June. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=84924&inline. Available: on SharePoint

California Department of Fish and Game. 1999a. California Wildlife Habitat Relationships System. Bald Eagle Life History Account. California Interagency Wildlife Task Group. October. Available: https://www.wildlife.ca.gov/Data/CWHR/Life-History-and-Range. Available: on SharePoint

California Department of Fish and Game. 1999b. California Wildlife Habitat Relationships System. Bank Swallow Life History Account. Life history accounts for species in the California Wildlife Habitat Relationships System were originally published in: Zeiner, D.C., W.F. Laudenslayer, Jr., K.E. Mayer, and M. White, eds. 1988-1990. California's Wildlife. Vol. I-III. California Department of Fish and Game, Sacramento, California. Available: https://www.wildlife.ca.gov/Data/CWHR/Life-History-and-Range. Available: on SharePoint

California Department of Fish and Game. 2012. Staff Report on Burrowing Owl Mitigation. Sacramento, CA. Prepared by the State of California Natural Resources Agency Department of Fish and Game. Sacramento, CA. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=83843&inline=true. Available: on SharePoint

California Department of Fish and Wildlife. 2016. 5 Year Status Report for Swainson’s Hawk (Buteo Swainsoni). Sacramento, CA. Prepared for the California Fish and Game Commission. Sacramento, CA. Available: on SharePoint

California Department of Fish and Wildlife. 2017. Survey and Monitoring Protocols and Guidelines, Bald Eagle Breeding Survey Instructions. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=83706&inline. Available: on SharePoint 

California Department of Fish and Wildlife. 2021a. California Natural Diversity Database, RareFind 5, January. Search for special-status wildlife within 5 miles of the study area. Sacramento, CA. Available: on SharePoint. Copyright protected. See introduction for more information

California Department of Fish and Wildlife. 2021b. Guide to Wildlife Habitats of California. Available: https://wildlife.ca.gov/Data/CWHR/Wildlife-Habitats. Available: on SharePoint

California Department of Fish and Wildlife. 2021c. Special Animals List. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=109406&inline. Last updated: February 2021. Available: on SharePoint 

California Department of Fish and Wildlife. 2021d. California Natural Diversity Database, RareFind 5, April. Search for California red-legged frog by county. Sacramento, CA. Available: on SharePoint. Copyright protected. See introduction for more information 

California Department of Fish and Wildlife. 2021e. Special Status Invertebrate Species Accounts. Anthicus antiochensis. Available: https://wildlife.ca.gov/Data/CNDDB/Invertebrates#insects-coleoptera. Available: on SharePoint

California Department of Fish and Wildlife. 2021f. Special Status Invertebrate Species Accounts. Anthicus sacramento. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=107587&inline=1. Available: on SharePoint

California Department of Fish and Wildlife. 2021g. Golden Eagles in California. Available: https://wildlife.ca.gov/Conservation/Birds/Golden-Eagles. Available: on SharePoint

California Department of Fish and Wildlife. 2021h. Bald Eagles in California. Available: https://wildlife.ca.gov/Conservation/Birds/Bald-Eagle. Available: on SharePoint

California Department of Water Resources. 2000. North of Delta Offstream Storage Investigation Progress Report, Appendix B: Wetland Delineation and Field Studies Report. Draft. Prepared for Integrated Storage Investigations, CALFED Bay-Delta Program. April 2000. Available: on SharePoint

California Partners in Flight. 2002. Version 2.0. The oak woodland bird conservation plan: a strategy for protecting and managing oak woodland habitats and associated birds in California (S. Zack, lead author). Point Reyes Bird Observatory, Stinson Beach, CA. Available: https://www.fs.usda.gov/psw/publications/documents/gtr-184/081_Zack.pdf - :~:text=The%20Oak%20Woodland%20Bird%20Conservation%20Plan%20%28BCP%29%20has,both%20native%20bird%20populations%20and%20other%20native%20species.. Available: on SharePoint

Cornell Lab of Ornithology. 2019. All About Birds. Last revised: 2019. Available: https://www.allaboutbirds.org/guide/White-tailed_Kite/. Available: on SharePoint

Cornell Lab of Ornithology. 2021. eBird. Search for northern harrier, golden eagle, yellow-breasted chat, and yellow warbler observations in the study area. Last updated: 2021. Available: https://ebird.org/species/norhar2/US-CA. Available on SharePoint 

Dixon, K. L., R. E. Dixon, and J. E. Dixon. 1957. Natural History of the White-tailed Kite in San Diego County, California. Condor 59:156–165. Driscoll, D. E. 2010. Protocol for Golden Eagle Occupancy, Reproduction, and Prey Population Assessment. American Eagle Research Institute, Apache Jct., AZ. 55pp. Available: https://sora.unm.edu/sites/default/files/journals/condor/v059n03/p0156-p0165.pdf - :~:text=For%20the%20past%202%201%20years%20the%20White-tailed,the%20nesting%20of%20kites%20in%2035%20different%20localities. Available: on SharePoint

Dunk, J. R. 2020. White-tailed Kite (Elanus leucurus), version 1.0. In Birds of the World (A. F. Poole and F. B. Gill, Editors). Cornell Lab of Ornithology, Ithaca, NY, USA. Eng, L. L., D. Belk and C. H. Eriksen. 1990. Californian Anostraca: Distribution, Habitat, and Status. Journal of Crustacean Biology 10:247–277. Available: https://birdsoftheworld.org/bow/species/whtkit/cur/introduction. Available: on SharePoint Copyright protected. See introduction for more information

Erichsen, A. L., S. Smallwood, N. D. Ottum, and D. M. Fry. 1994. The White-tailed Kite: GIS Analysis of Habitat Selection in the Sacramento Valley, California with Implications for Conservation of Wildlife in Agricultural Landscapes. Journal of Raptor Research 28:46. Available: on SharePoint

Erichsen, A. L., S. K. Smallwood, A. M. Commandatore, B. W. Wilson, and M. D. Fry. 1996. White-tailed Kite Movement and Nesting Patterns in an Agricultural Landscape. Pp. 165-176 in D. M. Bird, D. E. Varland, and J. J. Negro (eds.), Raptors in Human Landscapes: Adaptations to Built and Cultivated Environments. Academic Press, London. Available: on SharePoint. Copyright protected. See introduction for more information 

Eriksen, C. H., and D. Belk. 1999. Fairy Shrimps of California’s Puddles, Pools, and Playas. Mad River Press. Eureka, CA. Available: on SharePoint. Copyright protected. See introduction for more information 

Estep, J. A. 1989. Biology, Movements and Habitat Relationships of the Swainson’s hawk in the Central Valley of California, 1986-87. Report for the California Department of Fish and Game, Nongame Bird and Mammal Sec. Rep. . Available: on SharePoint. Copyright protected. See introduction for more information 

Fellers, G. M., A. Launer, G. Rathbun, S. Bobzien, J. Alvarez, D. Sterner, R. B. Seymour, and M. Westphal. 2001. Overwintering tadpoles in the California red-legged frog (Rana aurora draytonii). Herpetological Review 32 (3):156157. http://thewildlifeproject.com/images/Fellers.etal.CRLF.Overwintering.pdf. Available: on SharePoint

Garcia, D. 2009. Spatial and Temporal Patterns of the Bank Swallow on the Sacramento River. A Thesis Presented to the Faculty of California State University, Chico, Chico, CA. Available: https://scholarworks.calstate.edu/downloads/v405sb00v?locale=fr. Available: on SharePoint

Garrison, B. A. 1998. Bank Swallow (Riparia riparia). In The Riparian Bird Conservation Plan: A Strategy for Reversing the Decline of Riparian-Associated Birds in California. Available: on SharePoint

Girvetz, E. H., and S. E. Greco. 2009. Multi-Scale Predictive Habitat Suitability Modeling Based on Hierarchically Delineated Patches: An Example for Yellow-Billed Cuckoos Nesting in Riparian Forests, California, USA. Landscape Ecology. Vol. 24. pp. 1315–1329.  Available: Available: on SharePoint

Halstead, B. J, S. M. Skalos, G. D. Wylie, and L. L. Casazza. 2015. Terrestrial Ecology of Semi-Aquatic Giant Gartersnakes (Thamnophis gigas). Herpetological Conservation and Biology 10(2):633–644. Available: https://www.herpconbio.org/Volume_10/Issue_2/Halstead_etal_2015.pdf. Available: on SharePoint

Halterman, M., M. J. Johnson, J. A. Holmes, and S. A. Laymon. 2015. A Natural History Summary and Survey Protocol for the Western Distinct Population Segment of the Yellow-Billed Cuckoo: U.S. Fish and Wildlife Techniques and Methods. 45 pp. Available: https://www.wrc-rca.org/species/survey_protocols/YBCU_SurveyProtocol_FINAL_DRAFT_22Apr2015.pdf. Available: on SharePoint

Helm, B. 1998. Biogeography of Eight Large Branchiopods Endemic to California. Pages 124–139 in C. W. Witham, E. T. Bauder, D. Belk, W. R. Ferrin, Jr., and R. Orduff (eds.), Ecology, Conservation, and Management of Vernal Pool Ecosystems—Proceedings from a 1996 Conference. Sacramento, CA: California Native Plant Society. Available: on SharePoint 

Hughes, J. M. 2015. Yellow-billed Cuckoo (Coccyzus americanus), The Birds of North America Online (A. Poole, Ed.). Ithaca: Cornell Lab of Ornithology; Retrieved from the Birds of North America Online: https://birdsoftheworld.org/bow/species/yebcuc/cur/introduction. Available: on SharePoint

Hunt, W. G., R. E. Jackman, T. L. Hunt, D. E. Driscoll, and L. Culp. 1999. A Population Study of Golden Eagles in the Altamont Pass Wind Resource Area; Population Trend Analysis 1994–1997. Predatory Bird Research Group, University of California, Santa Cruz, CA, USA. Available: https://www.nrel.gov/docs/fy99osti/26092.pdf. Available: on SharePoint

Jackman, R. E and J. M. Jenkins. 2004. Protocol for Evaluating Bald Eagle Habitat and Populations in California. Prepared for Prepared for: U.S. Fish and Wildlife Service Endangered Species Division, Sacramento, CA. Garcia and Associates, San Anselmo and Pacific Gas & Electric Company, San Ramon, CA. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=83707&inline. Available: on SharePoint

Jackman, R. E., W. G. Hunt, J. M. Jenkins, and P. J. Detrich. 1999. Prey of Nesting Bald Eagles in Northern California. Journal of Raptor Research 33:87–96. Available: https://sora.unm.edu/sites/default/files/journals/jrr/v033n02/p00087-p00096.pdf - :~:text=ABSTRACT.---Inland%20nesting%20Bald%20Eagles%20%28Haliaeetus%20leucocephalus%29%20in%20northern,carp%20%28Cyprinus%20carpio%29%20and%20tui%20chub%20%28Gila%20bicolor%29. Available: on SharePoint

Jennings, M. R., and M. P. Hayes. 1985. Pre-1900 overharvest of California red-legged frogs (Rana aurora draytonii): the inducement for bullfrog (Rana catesbeiana) introduction. Herpetologica 41(1): 94–103. Available: on SharePoint. Copyright protected. See introduction for more information 

Jennings, M. R., and M. P. Hayes. 1994. Amphibian and Reptile Species of Special Concern in California. Rancho Cordova, CA: California Department of Fish and Game, Inland Fisheries Division. Available: on SharePoint

Johnsgard, P. A. 1990. Hawks, Eagles and Falcons of North America: Biology and Natural History. Washington and London: Smithsonian Institution Press. Available: on SharePoint. Copyright protected. See introduction for more information 

Katzner, T. E., M. N. Kochert, K. Steenhof, C. L. McIntyre, E. H. Craig, and T. A. Miller. 2020. Golden Eagle (Aquila chrysaetos), version 2.0. In Birds of the World (P. G. Rodewald and B. K. Keeney, Editors). Introduction, Habitat, Diet and Foraging, and Breeding. Cornell Lab of Ornithology, Ithaca, NY, USA. https://doi.org/10.2173/bow.goleag.02. Available: on SharePoint Copyright protected. See introduction for more information

Kintsch, J., S. Jacobson, and P. Cramer. 2015. The Wildlife Crossing Guilds Decision Framework: A Behavior-based Approach to Designing Effective Wildlife Crossing Structures. Available: https://arc-solutions.org/wp-content/uploads/2021/03/08.-ICOET-WildlifeCrossingGuilds-paper.pdf. Available: on SharePoint 

Lay, C. 2008. The Status of the American Badger in the San Francisco Bay Area. MS Thesis. San Jose State University. San Jose, CA. Available: https://scholarworks.sjsu.edu/cgi/viewcontent.cgi?article=4619&context=etd_theses. Available: on SharePoint 

Laymon, S. A. 1998. Yellow-billed Cuckoo (Coccycus americanus). In The Riparian Bird Conservation Plan: A Strategy for Reversing the Decline of Riparian-associated Birds in California. California Partners in Flight. Available: on SharePoint  

Lehman, R. N. 1979. A Survey of Selected Habitat Features of 95 Bald Eagle Nest Sites in California. October. Wildlife Management Branch Administrative Report 79-1. California Department of Fish and Game. Available: on SharePoint 

Mendelsohn, J. M. and F. M. Jaksic. 1989. Hunting behaviour of Black-shouldered Kites in the Americas, Europe and Australia. Ostrich 60:1–12. Available: on SharePoint 

Morey, S.R. 2005. Spea hammondii. In Lannoo, M.J. (Ed.).: Amphibian Declines: The Conservation Status of United States Species. University of California Press, Berkeley, pp.514-517. Available: on SharePoint. Copyright protected. See introduction for more information 

Pagel, J.E., D.M. Whittington, and G.T. Allen. 2010. Interim Golden Eagle Inventory and Monitoring Protocols; and Other Recommendations. Division of Migratory Bird Management, U.S. Fish and Wildlife Service, Carlsbad, CA and Arlington, VA. Available: https://tethys.pnnl.gov/sites/default/files/publications/Pagel-2010.pdf. Available: on SharePoint 

Quinn, J. 2008. The Ecology of the American badger Taxidea taxus in California: Assessing Conservation Needs on Multiple Scales. PhD Thesis. University of California at Davis. Davis, CA. Available: on SharePoint 

Riparian Habitat Joint Venture. 2004. The Riparian Bird Conservation Plan: A Strategy for Reversing the Decline of Riparian-associated Birds in California. Version 2.0. California Partners in Flight. Available: on SharePoint. Copyright protected. See introduction for more information 

Rogers, D.C. 2001. Revision of the Neartic Lepidurus (Notostraca). Journal of Crustacean Biology 21:1002–1005. Available: https://research.nhm.org/pdfs/38894/38894.pdf. Available: on SharePoint 

Rosenberg, K. V., Ohmart, R. D., and Anderson, B. W., 1982. Community Organization of Riparian Breeding Birds: Response to an Annual Resource Peak. Auk 99:260‒274. Available: https://sora.unm.edu/sites/default/files/journals/auk/v099n02/p0260-p0274.pdf. Available: on SharePoint 

Shuford, W. D. and T. Gardali (eds.). 2008. California Bird Species of Special Concern: A Ranked Assessment of Species, Subspecies, and Distinct Populations of Birds of Immediate Conservation Concern in California. Studies of Western Birds 1. Western Field Ornithologists, Camarillo, California, and California Department of Fish and Game, Sacramento, California. Available: https://wildlife.ca.gov/Conservation/SSC/Birds. Available: on SharePoint 

Spencer, W.D., P. Beier, K. Penrod, K. Winters, C. Paulman, H. Rustigian-Romsos, J. Strittholt, M. Parisi, and A. Pettler. 2010. California Essential Habitat Connectivity Project: A Strategy for Conserving a Connected California. Prepared for California Department of Transportation, California Department of Fish and Game, and Federal Highways Administration. Sacramento, CA. Available: on SharePoint

Stebbins, R. C. 2003. A Field Guide to Western Reptiles and Amphibians. 3rd edition. Boston, MA: Houghton Mifflin Company. Available: on SharePoint. Copyright protected. See introduction for more information 

Storer, T. I. 1925. A synopsis of the Amphibia of California. University of California Publications in Zoology 27: 1–342. Available: https://ia801202.us.archive.org/18/items/synopsisofamphib00stor/synopsisofamphib00stor.pdf. Available: on SharePoint 

Swainson’s Hawk Technical Advisory Committee. 2000. Recommended timing and methodology for Swainson’s hawk nesting surveys in California’s Central Valley. May 31. Available: on SharePoint 

Swolgaard, C., K. Reeves, and D. Bell. 2008. Foraging by Swainson’s Hawks in a Vineyard-dominated Landscape. Journal of Raptor Research 42(3):188–196. Available: https://ucanr.edu/sites/CCRC/files/306637.pdf. Available: on SharePoint 

Talley, T. S., D. Wright D, and M. Holyoak. 2006. Assistance with the 5-Year Review of the Valley elderberry longhorn beetle (Desmocerus californicus dimorphus). United States Fish and Wildlife Service, Sacramento, CA. Available: on SharePoint

Talley, T. S., E. Fleishman, M. Holyoak, D. D. Murphy, and A. Ballard. 2007. Rethinking a rare species conservation strategy in an urban landscape: The case of the valley elderberry longhorn beetle. Biological Conservation 135:21–32. Available: on SharePoint 

The Xerces Society for Invertebrate Conservation. 2018. A Petition to the Crotch Bumble Bee (Bombus crotchii), Franklin’s Bumble Bee (Bombus franklini), Suckley Cuckoo Bumble Bee (Bombus suckleyi), and Western Bumble Bee (Bombus occidentalis occidentalis) as Endangered under the California Endangered Species Act. Prepared for the California Fish and Game Commission. Sacramento, CA. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=161902&inline Available: on SharePoint 

U.S. Fish and Wildlife Service. 1999. Draft Recovery Plan for the Giant Garter Snake (Thamnophis gigas). Portland, OR. Available: on SharePoint

U.S. Fish and Wildlife Service. 2002. Recovery Plan for the California Red-Legged Frog (Rana aurora draytonii). Portland, OR. https://www.iucn-amphibians.org/wp-content/uploads/2018/11/California-Red-legged-Frog-Recovery-Plan.pdf Available: on SharePoint 

U.S. Fish and Wildlife Service. 2005a. Recovery Plan for Vernal Pool Ecosystems of California and Southern Oregon. Available: on SharePoint 

U.S. Fish and Wildlife Service. 2005b. Revised Guidance on Site Assessments and Field Surveys for the California Red-legged Frog. August. Sacramento, CA: Ecological Services, Sacramento Field Office. Available: https://petaluma.granicus.com/MetaViewer.php?view_id=3&meta_id=374368 - :~:text=Similar%20to%20the%201997%20Guidance%2C%20two%20procedures%20are,determine%20whether%20CRF%20are%20likely%20to%20be%20present.. Available: on SharePoint 

U.S. Fish and Wildlife Service. 2006a. Valley Elderberry Longhorn Beetle (Desmocerus californicus dimorphus) 5-Year Review. September. Available: on SharePoint

U.S. Fish and Wildlife Service. 2006b. Giant Garter Snake (Thamnophis gigas). 5-Year Review: Summary and Evaluation. U.S. Fish and Wildlife Service, Sacramento Fish and Wildlife Office, Sacramento, California. September 2006. Available: https://biologistshandbook.com/wp-content/uploads/2018/01/5-Year-Review-2006-1.pdf Available: on SharePoint 

U.S. Fish and Wildlife Service. 2007a. Vernal Pool Fairy Shrimp (Branchinecta lynchi) 5-year Review: Summary and Evaluation. U.S. Fish and Wildlife Service Sacramento Fish and Wildlife Office Sacramento, California. September. Available: https://corpora.tika.apache.org/base/docs/govdocs1/235/235385.pdf. Available: on SharePoint 

U.S. Fish and Wildlife Service. 2007b. Vernal Pool Tadpole Shrimp (Lepidurus packardi) 5-Year Review: Summary and Evaluation. U.S. Fish and Wildlife Service Sacramento Fish and Wildlife Office Sacramento, California. September. Available: https://ecos.fws.gov/docs/tess/species_nonpublish/1126.pdf. Available: on SharePoint

U.S. Fish and Wildlife Service. 2012. Conservancy Fairy Shrimp (Branchinecta conservatio) 5-Year Review: Summary and Evaluation. U.S. Fish and Wildlife Service Sacramento Fish and Wildlife Office Sacramento, California. June. Available: https://esadocs.defenders-cci.org/ESAdocs/five_year_review/doc4012.pdf. Available: on SharePoint 

U.S. Fish and Wildlife Service. 2015a. Revised Draft Recovery Plan for Giant Garter Snake (Thamnophis gigas). U.S. Fish and Wildlife Service, Pacific Southwest Region, Region 8. Sacramento, CA. Available: https://meridian.allenpress.com/jfwm/article-supplement/209660/pdf/042016-jfwm-029_s5. Available: on SharePoint 

U.S. Fish and Wildlife Service. 2015b. Survey Guidelines for the Listed Large Branchiopods. May 31. U.S. Fish and Wildlife Service, Pacific Southwest Region, Region 8. Sacramento, CA. Available: on SharePoint 

U.S. Fish and Wildlife Service.2017a. Framework for Assessing Impacts to the Valley Elderberry Longhorn Beetle (Desmocerus californicus dimorphus). U.S. Fish and Wildlife Service; Sacramento, California. 28 pp. May 2017. Available: https://www.fws.gov/sites/default/files/documents/survey-guidelines-for-valley-elderberry-longhorn-beetle.pdf. Available: on SharePoint

U.S. Fish and Wildlife Service. 2017b. Recovery Plan for the Giant Garter Snake (Thamnophis gigas). U.S. Fish and Wildlife Service, Pacific Southwest Region, Sacramento, California. vii + 71 pp. Available: https://ecos.fws.gov/docs/recovery_plan/20170928_Signed Final_GGS_Recovery_Plan.pdf. Available: on SharePoint 

U.S. Fish and Wildlife Service. 2017c. Recommended Buffer Zones for Human Activities around Nesting Sites of Bald Eagles in California and Nevada. December. Great Basin Region Migratory Birds Program. Available: https://www.fws.gov/sites/default/files/documents/USFWS-California-Great-Basin-bald-eagle-nest-buffer-recommendations-Dec2017_0.pdf. Available: on SharePoint 

U.S. Fish and Wildlife Service. 2019a. Species Assessment and Listing Priority Assignment Form for Yellow-billed Cuckoo (Coccyzus americanus). September 10, 2019. Available: on SharePoint 

U.S. Fish and Wildlife Service. 2019b. Pollinators. June 17. Available: on SharePoint 

U.S. Fish and Wildlife Service. 2019c. Species Status Assessment for the Tricolored Blackbird (Agelaius tricolor). Version 1.1. Sacramento, CA. Prepared by U.S. Fish and Wildlife Service Sacramento Field Office, Sacramento, CA. Available: https://ecos.fws.gov/ServCat/DownloadFile/166302. Available: on SharePoint 

U.S. Fish and Wildlife Service. 2020a. U.S. Fish and Wildlife Service Finds Endangered Species Act Listing for Monarch Butterfly Warranted but Precluded. Available: https://www.fws.gov/news/ShowNews.cfm?ref=u.s.-fish-and-wildlife-service-finds-endangered-species-act-listing-for-&_ID=36817. Available; on SharePoint 

U.S. Fish and Wildlife Service. 2020b. Updated Eagle Nest Survey Guidance. Available: https://www.fws.gov/sites/default/files/documents/eagle-nest-survey-guidance-updated-protocol.pdf. Available: on SharePoint 

U.S. Fish and Wildlife Service. 2020c. Recommended Buffer Zones for Ground-based Human Activities around Nesting Sites of Golden Eagles in California and Nevada. October. Great Basin Region Migratory Birds Program. Available: on SharePoint 

U.S. Fish and Wildlife Service. 2021. IPaC Resource List for the project area. Obtained from the Information for Planning and Consultation (IPaC). Available: on SharePoint 

U.S. Geological Survey. n.d. Bat Research in California. Available: https://www.usgs.gov/centers/werc/science/bat-research-california?qt-science_center_objects=0#qt-science_center_objects. Available: on SharePoint 

Williams, D. F. 1986. Mammalian Species of Concern in California. California Department of Fish and Game Report 86-1. California Department of Fish and Game, Sacramento, CA. 112 pages. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=83760&inline. Available: on SharePoint 

Yarnal, C. 2019. Best Management Practices for the Conservation of Western Pond Turtle Populations in California. Master Thesis. University of San Francisco. San Francisco, CA. Available: https://repository.usfca.edu/cgi/viewcontent.cgi?article=2149&context=capstone. Available: on SharePoint 

Yolo Habitat Conservancy. 2018. Yolo Habitat Conservation Plan/Natural Community Conservation Plan. Final. April 2018. Available: https://www.yolohabitatconservancy.org/documents. Available: on SharePoint 

Zeiner, D. C., W. F. Laudenslayer, Jr., and K. E. Mayer (eds.). 1988. California’s Wildlife. Volume I: Amphibians and Reptiles. California Statewide Wildlife Habitat Relationships System. Sacramento, CA: California Department of Fish and Game. Available: on SharePoint. Copyright protected. See introduction for more information 

Zeiner, D. C., W. F. Laudenslayer, Jr., and K. E. Mayer (eds.). 1990a. California Statewide Wildlife Habitat Relationships System. Sacramento, CA: California Department of Fish and Game. Available: on SharePoint. Copyright protected. See introduction for more information

Zeiner, D. C., W. F. Laudenslayer, Jr., and K. E. Mayer (eds.). 1990b. California’s Wildlife. Volume III: Mammals. California Statewide Wildlife Habitat Relationships System. Sacramento, CA: California Department of Fish and Game. Available: on SharePoint. Copyright protected. See introduction for more information

Personal Communication

Davis, Brittany E. Environmental Program Manager. California Department of Water Resources. July 6, 2021—Email to John Spranza, Senior Ecologist/Regulatory Specialist, HDR, Sacramento, CA, and Mallory Bedwell, California Department of Water Resources.

Acuña, S., D. Baxa, and S. Teh. 2012a. Sublethal Dietary Effects of Microcystin Producing Microcystis on Threadfin Shad, Dorosoma petenense. Toxicon 60(6): 1191–1202. Available: on SharePoint 

Acuña, S., D. Deng, P. Lehman, S. Teh. 2012b. Sublethal Dietary Effects of Microcystis on Sacramento Splittail, Pogonichthys macrolepidotus. Aquatic Toxicology 110-111: 1–8. doi: 10.1016/j.aquatox.2011.12.004. Available: on SharePoint 

Acuña, S., D. Baxa, P. Lehman, F. C. Teh, D. F. Deng, and S. Teh. 2020. Determining the exposure pathway and impacts of Microcystis on Threadfin shad, Dorosoma petenense, in San Francisco Estuary. Environmental Toxicology and Chemistry 39(4):787-798. Available: on SharePoint 

Alpers, C., C. Eagles-Smith, C. Foe, S. Klasing, M. Marvin-DiPasquale, D. Slotton, and L. Winham-Myers. 2008. Mercury Conceptual Model. Sacramento (CA): Delta Regional Ecosystem Restoration Implementation Plan. Available: on SharePoint 

American River Water Agencies. 2017. Modified Flow Management Standard Proposed Water-Right Terms and Conditions. Exhibit ARWA-502. November. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/PCWA/ARWA_308.pdf. Available: on SharePoint 

Anderson, J. 2018. Using River Temperature to Optimize Fish Incubation Metabolism and Survival: A Case for Mechanistic Models. Researchgate Preprint. 10.1101/257154. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/Anderson %282018%29.pdf. Available: on SharePoint 

Armor, C., R. Baxter, B. Bennett, R. Bruer, M. Chotkowski, P. Coulston, D. Denton, B. Herbold, W. Kimmerer, K. Larsen, M. Nobriga, K. Rose, T. Sommer, and M. Stacey. 2005. Interagency Ecological Program Synthesis of 2005 Work to Evaluate the Pelagic Organism Decline (POD) in the Upper San Francisco Estuary. Interagency Ecological Program, Sacramento, CA. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/swrcb/swrcb_armor2005.pdf. Available: on SharePoint 

Arthur, J. F., M. D. Ball, and S. Y. Baughman. 1996. Summary of Federal and State Water Project Environmental Impacts in the San Francisco Bay-Delta Estuary, California. In The San Francisco Bay: The Ecosystem, edited by J. T. Hollibaugh, 445–495. Seventy-fifth annual meeting of the Pacific Division, American Association for the Advancement of Science. Held at San Francisco State University, June 19–24, 1994. San Francisco, CA. Available: on SharePoint. Copyright protected. See introduction for more information

Azat, J. 2019. GrandTab 2019.05.07. California Central Valley Chinook Population Database Report. California Department of Fish and Wildlife. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=84381. Available: on SharePoint 

Baerwald, M. R., B. M. Schreier, G. Schumer, and B. May. 2012. Detection of Threatened Delta Smelt in the Gut Contents of the Invasive Mississippi Silverside in the San Francisco Estuary Using TaqMan Assays. Transactions of the American Fisheries Society 141: 1600–1607. Available: https://gvl.ucdavis.edu/sites/g/files/dgvnsk6021/files/inline-files/Baerwald et al 2012.pdf. Available: on SharePoint 

Bartholomew, J. L. 2012. 3.2.4 Salmonid ceratomyxosis. AFS-FHS (American Fisheries Society-Fish Health Section). FHS Blue Book: Suggested Procedures for the Detection and Identification of Certain Finfish and Shellfish Pathogens, 2014 Edition. Available: on SharePoint. Copyright protected. See introduction for more information

Baxter, R., K. Hieb, S. DeLeón, K. Fleming, and J. Orsi. 1999. Report on the 1980-1995 fish, shrimp, and crab sampling in the San Francisco Estuary, California. Interagency Ecological Program for the Sacramento-San Joaquin Estuary, Technical Report 63, California Department of Fish and Game, Stockton, CA, 503 p. 

Baxter, R., R. Breuer, L. Brown, M. Chotkowski, F. Feyrer, M. Gingras, B. Herbold, A. Mueller-Solger, M. Nobriga, T. Sommer, and K. Souza. 2008. Pelagic Organism Decline Progress Report: 2007 Synthesis of Results. Technical Report 227. Interagency Ecological Program for the San Francisco Estuary. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/srcsd/baxterreport.pdf. Available: on SharePoint 

Baxter, R., R. Breuer, L. Brown, L. Conroy, F. Feyrer, S. Fong, K. Gehrts, L. Grimaldo, B. Herbold, P. Hrodey, A. Mueller-Solger, T. Sommer, and K. Souza. 2010. Pelagic Organism Decline Work Plan and Synthesis of Results. Interagency Ecological Program for the San Francisco Estuary. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/FOTR/for_60.pdf. Available: on SharePoint 

Beamesderfer, R., M. Simpson, G. Kopp, J. Inman, A. Fuller, and D. Demko. 2004. Historical and Current Information on Green Sturgeon Occurrence in the Sacramento and San Joaquin Rivers and Tributaries. Prepared by for State Water Contractors, Sacramento, CA. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1130 Beamesderfer_et_al_2004_green_sturgeon_spawning_locations.pdf. Available: on SharePoint 

Beckon, W.N., and T.C. Maurer. 2008. Potential Effects of Selenium Contamination on Federally Listed Species Resulting from Delivery of Federal Water to the San Luis Unit. U.S. Fish and Wildlife Service. Sacramento Fish and Wildlife Office. Environmental Contaminants Division. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/cwin/cwin_exh25.pdf - :~:text=Selenium%20concentrations%20in%20agricultural%20drainwater%20from%20this%20area,strictly%20terrestrial%20wildlife%20may%20be%20impacted%20as%20well.. Available: on SharePoint 

Beckvar, N., T. M. Dillon, and L. B. Read. 2005. Approaches for linking whole‐body fish tissue residues of mercury or DDT to biological effects thresholds. Environmental Toxicology and Chemistry: An International Journal 24(8):2094-2105. Available: on SharePoint. Copyright protected. See introduction for more information

Bellido-Leiva, F., R. A. Lusardi, and J. R. Lund. 2021. Modeling the Effect of Habitat Availability and Quality on Endangered Winter-Run Chinook Salmon (Oncorhynchus tshawytscha) Production in the Sacramento Valley. Ecological Modelling 447. Available: on SharePoint. Copyright protected. See introduction for more information

Bennett, W. A. 2005. Critical Assessment of the Delta Smelt Population in the San Francisco Estuary, California. San Francisco Estuary and Watershed Science 3: Article 1. Available: https://watershed.ucdavis.edu/sites/g/files/dgvnsk8531/files/products/2021-11/eScholarship UC item 0725n5vk.pdf. Available: on SharePoint 

Bennett, W. A., and J. R. Burau. 2015. Riders on the Storm: Selective Tidal Movements Facilitate the Spawning Migration of Threatened Delta Smelt in the San Francisco Estuary. Estuaries and Coasts 38(3): 826–835. Available: on SharePoint 

Bennett, W. A., J. A. Hobbs, and S. J. Teh. 2008. Interplay of Environmental Forcing and Growth-Selective Mortality in the Poor Year Class Success of Delta Smelt in 2005. Final Report. Fish Otolith and Condition Study 2005. Prepared for the Pelagic Organism Decline Management Team. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/bennett_etal_2008.pdf. Available: on SharePoint 

Bever, A. and M. MacWilliamson. 2018. Evaluation of Sedimentation in the Low Salinity Zone. Presented to the California Water and Environmental Modeling Forum 2018 Annual Meeting, April 2018. 

Blake, A., and M. J. Horn. 2006. Acoustic Tracking of Juvenile Chinook Salmon Movement in the Vicinity of the Delta Cross Channel, Sacramento River, California – 2001 Study Results. Draft report. United States Geological Survey. Available: on SharePoint 

Blake, A., P. Stumpner, and J. Burau. 2017. A Simulation Method for Combining Hydrodynamic Data and Acoustic Tag Tracks to Predict the Entrainment of Juvenile Salmonids onto the Yolo Bypass under Future Engineering Scenarios. July 21. West Sacramento, CA: U.S. Geological Survey. Available: on SharePoint. Copyright protected. See introduction for more information

Bratovich, P., J. Weaver, C. Addley, and C. Hammersmark. 2017. Lower American River. Biological Rationale, Development and Performance of the Modified Flow Management Standard. Exhibit ARWA-702. Prepared for Water Forum. Sacramento, CA. Available: https://waterforum.org/wp-content/uploads/2017/12/ARWA-702-Biological-Rationale-Development-and-Performance-of-the-Modified-Flow-Management-Standard-00023990xE2E14.pdf. Available: on SharePoint 

Brege, D. A., L. G. Gilbreath, R. A. Absolon, B. J. Sandford, and G. M. Matthews. 2005. Studies to Evaluate the Effectiveness of Extended-Length Screens at John Day Dam, 2004. October. Seattle, WA: National Marine Fisheries Service, Northwest Fisheries Science Center, Fish Ecology Division. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626523.pdf. Available: on SharePoint 

Brooks, M. L., E. Fleishman, L. R. Brown, P. W. Lehman, I. Werner, N. Scholz, C. Mitchelmore, J. R. Lovvorn, M. L. Johnson, D. Schlenk, and S. van Drunick. 2012. Life Histories, Salinity Zones, and Sublethal Contributions of Contaminants to Pelagic Fish Declines Illustrated with a Case Study of San Francisco Estuary, California, USA. Estuaries and Coasts 35(2):603-621. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626546.pdf. Available: on SharePoint 

Brown, C. J. 2000. North of the Delta Offstream Storage Investigation Progress Report. Appendix D: Fish Survey Summary. Assisted by W. Yip, G. Gorden, G. Low, and A. Scholzen. CALFED Bay-Delta Program. Available: on SharePoint 

Brown, L., and P. Moyle. 2005. Native Fishes of the Sacramento–San Joaquin Drainage, California: A History of Decline. American Fisheries Society Symposium 45:75–98. Available: on SharePoint 

Brown, L. R., and D. Michniuk. 2007. Littoral Fish Assemblages of the Alien dominated Sacramento–San Joaquin Delta, California 1980–1983 and 2001–2003. Estuaries and Coasts 30: 186–200. Available: on SharePoint. Copyright protected. See introduction for more information

Brown, R., B. Cavallo, and K. Jones. 2004. The Effects of the Feather River Hatchery on Naturally Spawning Salmonids. Oroville Facilities Relicensing (FERC Project Number 2100). Draft Report SP-F9. Prepared by California Department of Water Resources, Sacramento, California, and Pacific States Marine Fisheries Commission, Portland, OR. Available: on SharePoint 

Burau, J. R., S. G. Monismith, M. T. Stacey, R. N. Oltmann, J. R. Lacy, and D. H. Schoellhamer. 2000. Recent research on the hydrodynamics of the Sacramento-San Joaquin River Delta and North San Francisco Bay. IEP Newsletter 13(2): 45-55. Interagency Ecological Program for the Sacramento-San Joaquin Estuary, Sacramento, California. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/ccwd/spprt_docs/ccwd_burau_etal_1999.pdf. Available: on SharePoint 

Burau, J., A. Blake, and R. Perry. 2007. Sacramento/San Joaquin River Delta Regional Salmon Outmigration Study Plan: Developing Understanding for Management and Restoration. December 10. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/nmfs/spprt_docs/nmfs_exh4_burau_etal_2007.pdf. Available: on SharePoint 

Bush, E. E. 2017. “Migratory Life Histories and Early Growth of the Endangered Estuarine Delta Smelt (Hypomesus transpacificus).” MS Thesis. University of California, Davis. Davis, CA. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2_rebuttal/dwr_1268.pdf. Available: on SharePoint 

Cain, J. and C. Monohan, 2008. Estimating Ecologically Based Flow Targets for the Sacramento and Feather Rivers. April. The Natural Heritage Institute. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1126 Cain_and_Monohan_2008_Sacramento-and-Feather-Env-Flows-Doc_April2008.pdf. Available: on SharePoint 

CALFED Bay-Delta Program. 2000a. Ecosystem Restoration Program Plan. Volume I: Ecological Attributes of the San Francisco Bay-Delta Watershed. Available: on SharePoint 

CALFED Bay-Delta Program. 2000b. Ecosystem Restoration Program Plan - Volume II: Ecological Management Zone Visions. Final Programmatic EIS/EIR Technical Appendix. Sacramento, CA. Available: on SharePoint  

California Department of Fish and Game. 1992. A Re-examination of Factors Affecting Striped Bass Abundance in the Sacramento-San Joaquin Estuary. WRINT-DFG-Exhibit 2. Entered by the California Department of Fish and Game for the State Water Resources Control Board 1992 Water Rights Phase of the Bay-Delta Estuary Proceedings. Available: on SharePoint 

California Department of Fish and Game. 2003. Fisheries Studies at Stony Creek, Thomes Creek, Sites Newville Projects, and Colusa Basin Drain Report. California Department of Fish and Game, Central Valley Bay-Delta Branch. 

California Department of Fish and Game. 2008. California Aquatic Invasive Species Management Plan. January. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=3868&inline=1. Available: on SharePoint 

California Department of Fish and Game. 2009. California Endangered Species Act Incidental Take Permit No. 2081-2009-001-03. Department of Water Resources California State Water Project Delta Facilities and Operations. Yountville, CA: California Department of Fish and Game, Bay Delta Region. Available: on SharePoint 

California Department of Fish and Wildlife. 2018. Franks Tract Future? Exploring options for Multi-Benefit Restoration and Increased Resilience in the Central Delta Corridor. June 2018. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=159294&inline. Available: on SharePoint 

California Department of Fish and Wildlife. 2020. California Endangered Species Act Incidental Take Permit No. 2081-2019-066-00. Long-Term Operation of the State Water Project in the Sacramento San Joaquin Delta. Sacramento, CA: California Department of Fish and Game, Ecosystem Conservation Division. Available: on SharePoint 

California Department of Transportation. 2015. Technical Guidance for Assessment and Mitigation of the Hydroacoustic Effects of Pile Driving on Fish. California Department of Transportation, Sacramento, CA. Available: on SharePoint 

California Department of Water Resources. 1985. Sacramento River Spawning Gravel Studies, Executive Summary. June. Available: on SharePoint 

California Department of Water Resources. 1994. Sacramento River Bank Erosion Investigation. Memorandum Progress Report. September 23. Available: on SharePoint 

California Department of Water Resources. 2002. Optimum Chinook Salmon flow suitability for spawning California Department of Water Resources - Evaluation of Lake Oroville Water Surface Elevation Reduction on Bass (Micropterus spp.) Spawning Success. Oroville FERC Relicensing (Project No. 2100), Interim Progress Report, SP-F3, Task 2C. 

California Department of Water Resources. 2004. SP F-16 Phase 2 Report. Oroville Facilities Relicensing, FERC Project No. 2100. 

California Department of Water Resources. 2005. Bulletin 250. Fish Passage Improvement: An Element of CALFED’s Ecosystem Restoration Program. 263 pp. Available from https://cawaterlibrary.net/wp-content/uploads/2017/05/CalFed-Fish-Passage-Report.pdf. Available: on SharePoint 

California Department of Water Resources. 2006. Settlement Agreement for Licensing of the Oroville Facilities. FERC Project No. 2100. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/water_quality_cert/docs/oroville_ferc2100/oroville2006settlementagreement.pdf. Available: on SharePoint 

California Department of Water Resources. 2007. Oroville Facilities Relicensing FERC Project No. 2100 Draft Environmental Impact Report. May. Available: on SharePoint 

California Department of Water Resources. 2010. State Plan of Flood Control Descriptive Document. Available: https://h8b186.p3cdn2.secureserver.net/wp-content/uploads/2017/05/SPFC_Descriptive_Doc_20100115.pdf. Available: on SharePoint  

California Department of Water Resources. 2016. Biological Assessment for the California WaterFix. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/exhibit104/docs/1_Cover_TitlePage_TOC_RevisedDraftBA.pdf. Available: on SharePoint 

California Department of Water Resources. 2019a. California EcoRestore Projects. https://water.ca.gov/Programs/All-Programs/EcoRestore#. Available: on SharePoint 

California Department of Water Resources. 2019b. Work Plan for Monitoring and Assessment of Proposed Suisun Marsh Salinity Control Gates Action, 2019. West Sacramento, CA: California Department of Water Resources, Division of Environmental Sciences. June 3. Available: on SharePoint 

California Department of Water Resources. 2019c. North Delta Flow Action Study – 2019 Operation Plan, May 2019. 

California Department of Water Resources. 2019d. Incidental Take Permit Application for Long-Term Operation of the California State Water Project. December 13. Available: https://water.ca.gov/-/media/DWR-Website/Web-Pages/Programs/State-Water-Project/Files/1_DWR_LTO_ITP_Application_2019-12-13_a_y19.pdf. Available: on SharePoint 

California Department of Water Resources. 2020. Final Environmental Impact Report for Long-term Operation of the California State Water Project. State Clearinghouse No. 2019049121. March. Available: https://water.ca.gov/News/Public-Notices/2020/March-2020/Final-EIR-for-SWP-Operations. Available: on SharePoint 

California Department of Water Resources and U.S. Bureau of Reclamation. 2008. North-of-the-Delta Offstream Storage Investigation Plan Formulation Report. September. 

California Department of Water Resources, U.S. Bureau of Reclamation, U.S. Fish and Wildlife Service, and National Marine Fisheries Service. 2013. Environmental Impact Report/ Environmental Impact Statement for the Bay Delta Conservation Plan. Draft. December. 

California Hatchery Scientific Review Group. 2012. California Hatchery Review Report. Prepared for the U.S. Fish and Wildlife Service and Pacific States Marine Fisheries Commission. June. Available: on SharePoint 

California Natural Resources Agency. 2016. Delta Smelt Resiliency Strategy – July 2016. Available: https://resources.ca.gov/CNRALegacyFiles/docs/Delta-Smelt-Resiliency-Strategy-FINAL070816.pdf. Available: on SharePoint 

California Natural Resources Agency. 2017. Delta Smelt Resiliency Strategy – Progress Report, June 2017. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2_rebuttal/dwr_1235.pdf. Available: on SharePoint 

Castillo, G., J. Morinaka, J. Lindberg, R. Fujimura, B. Baskerville-Bridges, J. Hobbs, G. Tigan, L. Ellison. 2012. Pre-screen Loss and Fish Facility Efficiency for Delta Smelt at the South Delta’s State Water Project, California. San Francisco Estuary and Watershed Science 10(4). Available: https://escholarship.org/content/qt28m595k4/qt28m595k4_noSplash_8a8a93645e932a9214b4d7aabb20057d.pdf?t=q5a12g. Available: on SharePoint 

Cavallo, B., R. Brown, and D. Lee. 2009. Hatchery and Genetic Management Plan for Feather River Hatchery Spring-run Chinook Salmon Program. June. Auburn, California: Cramer Fish Sciences. Available: on SharePoint 

Cavallo, B., J. Merz, and J. Setka. 2012. Effects of Predator and Flow Manipulation on Chinook Salmon (Oncorhynchus tshawytscha) Survival in an Imperiled Estuary. Environmental Biology of Fishes 96(2–3): 393–403. doi. 10.1007/s10641-012-9993-5. Available: on SharePoint 

Cavallo, B., P. Gaskill, J. Melgo, and S.C. Zeug. 2015. Predicting juvenile Chinook Salmon routing in riverine and tidal channels of a freshwater estuary. Environmental Biology of Fishes, 98(6), 1571-1582. Available: on SharePoint 

Chapman, E. D., A. R. Hearn, C. J. Michel, A. J. Ammann, S. T. Lindley, M. J. Thomas, P. T. Sandstrom, G. P. Singer, M. L. Peterson, R. B. MacFarlane, and A. P. Klimley. 2013. Diel Movements of Out-migrating Chinook Salmon (Oncorhynchus tshawytscha) and Steelhead Trout (Oncorhynchus mykiss) Smolts in the Sacramento/San Joaquin Watershed. Environmental Biology of Fishes 96(2-3): 273–286. Available: on SharePoint 

Clark, K. W., M. D. Bowen, R. B. Mayfield, K. P. Zehfuss, J. D. Taplin, and C. H. Hanson. 2009. Quantification of Pre-Screen Loss of Juvenile Steelhead in Clifton Court Forebay. March. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/srcsd/juvisteelheadlossquantification.pdf. Available: on SharePoint 

Columbia Basin Research, University of Washington. 2020. SacPAS CDFW GrandTab Adult Escapement. Available: http://www.cbr.washington.edu/sacramento/data/query_adult_grandtab.html.  Available: on SharePoint 

Conrad, J. L., A. J. Bibian, K. L. Weinersmith, D. De Carion, M. J. Young, P. Crain, E. L. Hestir, M. J. Santos, and A. Sih. 2016. Novel Species Interactions in a Highly Modified Estuary: Association of Largemouth Bass with Brazilian Waterweed Egeria densa. Transactions of the American Fisheries Society 145(2):249-263. Available: on SharePoint. Copyright protected. See introduction for more information

Connon, R. E., S. Beggel, L. S. D'Abronzo, J. P. Geist, J. Pfeiff, A. V. Loguinov, C. D. Vulpe, and I. Werner. 2011. Linking molecular biomarkers with higher level condition indicators to identify effects of copper exposures on the endangered delta smelt (Hypomesus transpacificus). Environmental Toxicology and Chemistry 30(2):290-300. Available: on SharePoint. Copyright protected. See introduction for more information

Cordoleani, F., E. Holmes, and C. Jeffres. 2020. Evaluating the Role(s) of the Butte Sink and Sutter Bypass for Butte Creek Spring- Run Chinook Salmon and Other Central Valley Juvenile Salmonid Populations - 2019 Study Year. Available: on SharePoint 

Cramer, S. P., D. B. Demko, C. G. Chapman, M. L. Simpson, and G. J. R. Kopp. 2005. Potential Fish Benefits from Screens or Screening Modifications at Sutter Mutual Water Company, Reclamation District 108, and M&T Ranch/Llano Seco. Technical Memorandum. S.P. Cramer & Associates. June 29. Available: on SharePoint 

Cramer Fish Sciences. 2016. Coleman National Fish Hatchery Adaptive Management Plan. Public Review Draft, March 1. Prepared for Bureau of Reclamation, Mid-Pacific Region. Auburn, CA. Available: https://usbr.gov/mp/battlecreek/docs/cnfh-amp-final-nov2016.pdf. Available: on SharePoint 

Cunningham, C., N. Hendrix, E. Dusek-Jennings, R. Lessard, and R. Hilborn. 2015. Delta Chinook Final Report to the Delta Science Panel. Available: on SharePoint 

David Evans and Associates, Inc., MWH Americas, Inc., and R2 Resource Consultants. 2007. Clean Water Services Tualatin Basin Water Supply Project. Fish Habitat, Draft Technical Report. Portland, OR. Available: on SharePoint 

Davis B., M. Bedwell, H. Wright, and J. Martinez. (2019). North Delta flow action 2019: Delta smelt and salmonids report. Department of Water Resources. Available: https://www.baydeltalive.com/assets/5c92b61032e1bfd2c6a30d4ee74773aa/application/pdf/North_Delta_Food_Web_Study_Fact_Sheet_06272019.pdf. Available: on SharePoint 

Delaney, D., P. Bergman, B. Cavallo, and J. Melgo. 2014. Stipulation Study: Steelhead Movement and Survival in the South Delta with Adaptive Management of Old and Middle River Flows. Prepared under the direction of Kevin Clark, Bay-Delta Office, Biotelemetry and Special Investigations Unit. California Department of Water Resources. Available: on SharePoint 

Dinehart, R. L., and J. R. Burau. 2005. Averaged Indicators of Secondary Flow in Repeated Acoustic Doppler Current Profiler Crossings of Bends. Water Resources Research 41(9):W09405. Available: https://agupubs.onlinelibrary.wiley.com/doi/epdf/10.1029/2005WR004050. Available: on SharePoint 

Dugdale, R. C., F. P. Wilkerson, V. E. Hogue, and A. Marchi. 2007. The Role of Ammonium and Nitrate in Spring Bloom Development in San Francisco Bay. Estuarine, Coastal and Shelf Science 73: 17–29. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/dugdale_etal_2007.pdf. Available: on SharePoint 

East Bay Municipal Utility District. 2012. Mokelumne River hatchery fish information received by Jose Setka, Fisheries and Wildlife Division. Available: on SharePoint 

Edmunds, J. L., K. M. Kuivila, B. E. Cole, and J. E. Cloern. 1999. Do Herbicides Impair Phytoplankton Primary Production in the Sacramento-San Joaquin River Delta? In Proceedings of the Technical Meeting: Toxic Substances Hydrology Program. Volume 2: Contamination of Hydrologic Systems and Related Ecosystems. U.S. Geological Survey Water Resources Investigation Report 99.4018B. Available: https://ca.water.usgs.gov/archive/reports/wrir994018/Edmunds.pdf Available: on SharePoint 

Engle, J., C. Enos, K. McGourty, T. Porter, B. Reed, J. Scammell-Tinling, K. Schaeffer, S. Siegel, and E. Crumb. 2010. Suisun Marsh Tidal Marsh and Aquatic Habitats Conceptual Model. Chapter 2: Aquatic Environment. Final Review Draft. Suisun Marsh Habitat Management, Restoration, and Preservation Plan. Available: on SharePoint 

Enos, C., J. Sutherland, and M. L. Nobriga. 2007. Results of a Two Year Fish Entrainment Study at Morrow Island Distribution System in Suisun Marsh. IEP Newsletter 20(1): 10-19. Available: on SharePoint 

Federal Energy Regulatory Commission. 2007. Final Environmental Impact Statement for Hydropower License, Oroville Facilities, FERC Project No. 2100-052, California. 

Federal Register. 2005. “Endangered and threatened species: proposed rule to list the Southern DPS of the North American green sturgeon as threatened.” 70FR17386. 

Feyrer, F., B. Herbold, S. A. Matern, and P. B. Moyle. 2003. Dietary Shifts in a Stressed Fish Assemblage: Consequences of a Bivalve Invasion in the San Francisco Estuary. Environmental Biology of Fishes 67: 277–288. Available: on SharePoint 

Feyrer, R., T. R. Sommer, and R. D. Baxter. 2005. Spatial-Temporal Distribution and Habitat Associations of Age-0 Splittail in the Lower San Francisco Watershed. Copeia 2005(1):159–168. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1123  Feyrer_et_al_2005_splittail_distribution_age-0.pdf. Available: on SharePoint 

Feyrer, F., Sommer, T., and W. Harrell. 2006a. Managing floodplain inundation for native fish: production dynamics of age-0 splittail (Pogonichthys macrolepidotus) in California’s Yolo Bypass. Hydrobiologia, 573(1), 213-226. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/swrcb/swrcb_feyrer2006.pdf. Available: on SharePoint 

Feyrer, F., T. Sommer, and W. Harrell, 2006b. Importance of flood dynamics versus intrinsic physical habitat in structuring fish communities: evidence from two adjacent engineered floodplains on the Sacramento River, California. North American Journal of Fisheries Management 26: 408–417. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/swrcb/swrcb_feyrer2006_2.pdf. Available: on SharePoint 

Feyrer, F., M. L. Nobriga, and T. R. Sommer. 2007. Multi-decadal Trends for Three Declining Fish Species: Habitat Patterns and Mechanisms in the San Francisco Estuary, California, U.S.A. Canadian Journal of Fisheries and Aquatic Sciences 64: 723–734. Available: on SharePoint 

Feyrer, F., T. Sommer, and S. B. Slater. 2009. Old School vs. New School: Status of Threadfin Shad (Dorosoma petenense) Five Decades After Its Introduction to the Sacramento–San Joaquin Delta. San Francisco Estuary and Watershed Science 7(1). Available: on SharePoint 

Feyrer F., J. Hobbs, and T. Sommer. 2010. Salinity Inhabited by Age-0 Splittail (Pogonichthys macrolepidotus) as Determined by Direct Field Observation and Retrospective Analyses with Otolith Chemistry [Online]. San Francisco Estuary and Watershed Science 8(2). Available: http://escholarship.org/uc/item/14j5160h. Available: on SharePoint 

Feyrer, F, K. Newman, M. Nobriga, and T. Sommer. 2011. Modeling the Effects of Future Freshwater Flow on the Abiotic Habitat of an Imperiled Estuarine Fish. Estuaries and Coasts 34: 120–128. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/0.7.115.6279-000002.pdf. Available: on SharePoint 

Feyrer, F., K. Newman, M. Nobriga, and T. Sommer. 2015. Delta Smelt Habitat in the San Francisco Estuary: A Reply to Manly, Fullerton, Hendrix, and Burnham’s “Comments on Feyrer et al. Modeling the Effects of Future Outflow on the Abiotic Habitat of an Imperiled Estuarine Fish”. Estuaries and Coasts 39(1):287-289. Available: https://ca.water.usgs.gov/pubs/2015/FeyrerEtAl2015.pdf. Available: on SharePoint 

Fish, M. A. 2010. A White Sturgeon Year-Class Index for the San Francisco Estuary and Its Relation to Delta Outflow. IEP Newsletter 23(2). Spring. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentId=26542&inline. Available: on SharePoint 

Fisher, F.W. 1992. Chinook Salmon, Oncorhynchus tshawytscha, growth and occurrence in the Sacramento–San Joaquin River System. Sacramento (CA): California Department of Fish and Game, Inland Fisheries Division. 

Fisheries Hydroacoustic Working Group. 2008. Agreement in Principal for Interim Criteria for Injury to Fish from Pile Driving Activities. National Marine Fisheries Service Northwest and Southwest Regions, U.S. Fish and Wildlife Service Regions 1 and 8, California/Washington/Oregon Departments of Transportation, California Department of Fish and Game, and U.S. Federal Highway Administration. Memorandum to Applicable Agency Staff. June 12. Available: https://wsdot.wa.gov/sites/default/files/2021-10/ENV-FW-BA_InterimCriteriaAgree.pdf. Available: on SharePoint 

Fong, S., S. Louie, I. Werner, J. Davis, and R. E. Connon. 2016. Contaminant Effects on California Bay–Delta Species and Human Health. San Francisco Estuary and Watershed Science 14(4). Available: http://www.escholarship.org/uc/item/52m780xj. Available: on SharePoint 

Frantzich, J., T. Sommer, and B. Schreier. 2018. Physical and Biological Responses to Flow in a Tidal Freshwater Slough Complex. San Francisco Estuary and Watershed Science 16(1). Available: https://escholarship.org/content/qt6s50h3fb/qt6s50h3fb.pdf?t=q4i5u2. Available: on SharePoint 

Fris, M. B. and R. W. DeHaven. 1993. A Community-Based Habitat Suitability Index Model for Shaded Riverine Aquatic Cover, Selected Reaches of the Sacramento River System. February. U.S. Fish and Wildlife Service, Ecological Services. Sacramento Field Office. Sacramento, CA. Available: on SharePoint 

Foott, J. S. 2014. Sacramento and Feather River Juvenile Chinook Pathogen Survey Spring 2014. U.S. Fish and Wildlife Service California – Nevada Fish Health Center, Anderson, CA. Available: on SharePoint 

Foott J. S., R. Stone, S. Voss, and K. Nichols. 2017. Ceratonova shasta and Parvicapsula minibicornis (Phylum Cnidaria: Myxosporea) infectivity for juvenile Chinook salmon (Oncorhynchus tshawytscha) in the Upper Sacramento River: July–November 2016. U.S. Fish and Wildlife Service California – Nevada Fish Health Center, Anderson, CA. Available: on SharePoint 

Gahan, G., M. Healey, C. McKibbin, H. Kubo, and C. Purdy. 2016. Colusa Basin Drain and Wallace Weir Fish Trapping and Relocation Efforts. November 2013 – June 2014. California Department of Fish and Wildlife, North Central Region. August. Available: on SharePoint 

Gingras, M. 1997. Mark/Recapture Experiments at Clifton Court Forebay to Estimate Pre-screening Loss to Juvenile Fishes, 1976-1993. Technical Report 55. Interagency Ecological Program for the San Francisco Bay/Delta Estuary. September. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentId=35431&inline. Available: on SharePoint 

Glenn-Colusa Irrigation District. 2001. Fish Screen Project: long-term protection for fisheries. Brochure published by GCID. 4 pp. https://912afe62-5b11-482e-8c47-c2358db4f96b.filesusr.com/ugd/c88b6b_36f9a9e00f8942b8960ff2b404ebd0af.pdf. Available: on SharePoint 

Glibert, P. M., D. Fullerton, J. M. Burkholder, J. C. Cornwell, and T. M. Kana. 2011. Ecological Stoichiometry, Biogeochemical Cycling, Invasive Species, and Aquatic Food Webs: San Francisco Estuary and Comparative Systems. Reviews in Fisheries Science 19:(4): 358–417. Available: on SharePoint 

Glibert, P. M., F. P. Wilkerson, R. C. Dugdale, A. E. Parker, J. Alexander, S. Blaser, and S. Murasko. 2014. Phytoplankton communities from San Francisco Bay Delta respond differently to oxidized and reduced nitrogen substrates—even under conditions that would otherwise suggest nitrogen sufficiency. Frontiers in Marine Science, Vol 1, Article 17, 1–16. Available: on SharePoint 

Goodman, D. H. and S. B. Reid. 2012. Pacific Lamprey (Entosphenus tridentatus) Assessment and Template for Conservation Measures in California. U.S. Fish and Wildlife Service, Arcata, California. Available: https://ifrmp.net/wp-content/uploads/2020/09/USFWS_2012_0526_Pacific-Lamprey-Entosphenus-tridentatus.pdf. Available: on SharePoint 

Goodman, D. H., S. B. Reid, N. A. Som, and W. R. Poytress. 2015. The punctuated seaward migration of Pacific lamprey (Entosphenus tridentatus): environmental cues and implications for streamflow management. Canadian Journal of Fisheries and Aquatic Sciences 72(12):1817-1828. Available: on SharePoint 

Goodman, D. H., Reid, S. B., Reyes, R. C., Wu, B. J., and B.B. Bridges. 2017. Screen efficiency and implications for losses of lamprey macrophthalmia at California’s largest water diversions. North American Journal of Fisheries Management, 37(1), 30-40. Available: on SharePoint 

Gould, Alison & Kimmerer, WJ. (2010). Development, growth, and reproduction of the cyclopoid copepod Limnoithona tetraspina in the upper San Francisco Estuary. Marine Ecology-progress Series - MAR ECOL-PROGR SER. 412. 163-177. 10.3354/meps08650. Available: on SharePoint 

Graham, R. J. and D. J. Orth. 1986. Effects of Temperature and Streamflow on Time and Duration of Spawning by Smallmouth Bass. Transactions of the American Fisheries Society 115: 693–702. Available: on SharePoint 

Greene, V. E., L. J. Sullivan, J. K. Thompson, W. J. Kimmerer. 2011. Grazing Impact of the Invasive Clam Corbula amurensis on the Microplankton Assemblage of the Northern San Francisco Estuary. Marine Ecology Progress Series Vol. 431: 183–193. Available: on SharePoint 

Greenfield, B. K., S. J. Teh, J. R. M. Ross, J. Hunt, G. H. Zhang, J. A. Davis. G. Ichikawa, D. Crane, S. O. Hung, D. F. Deng, F. C. Teh, P. G. Green. 2008. Contaminant Concentrations and Histopathological Effects in Sacramento Splittail (Pogonichthys macrolepidotus). Environmental Contamination & Toxicology 55(2): 270–281. August. Available: on SharePoint 

Greenwood, M. 2018. Potential Effects on Zooplankton From California WaterFix Operations. Technical Memorandum to California Department of Water Resources. July 2. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2_rebuttal/dwr_1349.pdf. Available: on SharePoint 

Gregory, R. S., and C. D. Levings. 1998. Turbidity Reduces Predation on Migrating Juvenile Pacific Salmon. Transactions of the American Fisheries Society 127(2):275-285. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/dwr/dwr_exh9.pdf. Available: on SharePoint 

Grimaldo, L. F., R. E. Miller, C. M. Peregrin, and Z. P. Hymanson. 2004. Spatial and Temporal Distribution of Native and Alien Ichthyoplankton in Three Habitat Types of the Sacramento–San Joaquin Delta. American Fisheries Society Symposium 39: 81–96. Available: on SharePoint 

Grimaldo, L. F., T. Sommer, N. Van Ark, G. Jones, E. Holland, P. B. Moyle, B. Herbold, and P. Smith. 2009. Factors Affecting Fish Entrainment into Massive Water Diversions in a Freshwater Tidal Estuary: Can Fish Losses be Managed? North American Journal of Fisheries Management 29: 1253–1270. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/srcsd/grimaldo2009.pdf. Available: on SharePoint 

Grimaldo, L., R. E. Miller, C. M. Peregrin, and Z. Hymanson. 2012. Fish Assemblages in Reference and Restored Tidal Freshwater Marshes of the San Francisco Estuary. San Francisco Estuary and Watershed Science 10(1). Available: on SharePoint 

Grossman, G. D., T. Essington, B. Johnson, J. Miller, N. E. Monsen, and T. N. Pearsons. 2013. Effects of Fish Predation on Salmonids in the Sacramento River-San Joaquin Delta and Associated Ecosystems. September 25. Available: on SharePoint 

Hallock, R. J., R. F. Elwell, and D. H. Fry, Jr. 1970. Migrations of Adult King Salmon, Oncorhynchus tshawytscha, in the San Joaquin Delta. California Department of Fish and Game Bulletin 151: 1–92. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/wq_control_plans/1995wqcp/exhibits/doi/doi-exh-46m.pdf. Available: on SharePoint 

Hamilton, S. A., and D. D. Murphy. 2020. Use of affinity analysis to guide habitat restoration and enhancement for the imperiled delta smelt. Endangered Species Research 43:103-120. Available: on SharePoint 

Hanson, C. H., and H. W. Li. 1978. A Research Program to Examine Fish Behavior in Response to Hydraulic Flow Fields – Development of Biological Design Criteria for Proposed Water Diversions. Completion report for Project C-7679, Grant No. 14-34-001-7254, Office of Water Research and Technology, United States Department of the Interior. February. Davis, CA: University of California. Available: on SharePoint 

Hanson, C. H. 2001. Are Juvenile Chinook Salmon Entrained at Unscreened Diversions in Direct Proportion to the Volume of Water Diverted? Contributions to the Biology of Central Valley Salmonids. California Department of Fish and Game Fish Bulletin 179: 331–342. Available: on SharePoint 

Hanson, M. B., Baird, R. W., Ford, J. K. B., Hempelmann, J. A., Van Doornik, D. M., Candy, J. R., Emmons, C. K., Schorr, G. S., Gisborne, B., Ayres, K. L., Wasser, S. K., Balcomb, K. C., Balcomb-Bartok, K., Sneva, J. G., and Ford, M. J. 2010. Species and stock identification of prey consumed by endangered Southern Resident Killer Whales in their summer range. Endangered Species Research. Vol. 11. pp. 69–82. doi: 10.3354/esr00263. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626166.pdf. Available: on SharePoint 

Harrell, W. C., and T. R. Sommer. 2003. Patterns of Adult Fish Use on California’s Yolo Bypass Floodplain. California Riparian Systems: Processes and Floodplain Management, Ecology, and Restoration. Pages 88–93 in P. M. Faber, editor, California Riparian Systems: Processes and Floodplain Management, Ecology, and Restoration. 2001 Riparian Habitat and Floodplains Conference Proceedings. Riparian Habitat Joint Venture. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/swrcb/swrcb_harrell2003.pdf. Available: on SharePoint 

Harvey, B. N., D. P. Jacobson, and M. A. Banks. 2014. Quantifying the Uncertainty of a Juvenile Chinook Salmon Race Identification Method for a Mixed-Race Stock. North American Journal of Fisheries Management 34(6):1177-1186. Available: on SharePoint 

Hastings, M. C., and A. N. Popper. 2005. Effects of sound on fish. Report prepared for California Department of Transportation. Jones & Stokes, Sacramento, CA. Available: https://www.pge.com/includes/docs/pdfs/shared/edusafety/systemworks/dcpp/hastings_and_popper_2005_effects_of_sound_on_fish.pdf. Available: on SharePoint 

Henderson, M. J., I. S. Iglesias, C. J. Michel, A. J. Ammann, and D. D. Huff. 2019. Estimating spatial-temporal differences in Chinook salmon outmigration survival with habitat and predation related covariates. Canadian Journal of Fisheries and Aquatic Sciences 76(9):1549-1561. Available: on SharePoint 

Hendrix, N., A. Criss, E. Danner, C. M. Greene, H. Imaki, A. Pike, and S. T. Lindley. 2014. Life cycle modeling framework for Sacramento River winter-run Chinook salmon. Technical Memorandum NOAA-TM-NMFS-SWFSC-530. July. National Marine Fisheries Service, Southwest Fisheries Science Center, Long Beach, CA Available: on SharePoint 

Hennessy, A., and T. Enderlein. 2013. Zooplankton Monitoring 2011. IEP Newsletter 26(1): 23–30. Available: on SharePoint 

Hennessy, A., and Z. Burris. 2017. Preliminary analysis of current relationships between zooplankton abundance and freshwater outflow in the upper San Francisco Estuary. Memorandum to S. Louie, Senior Environmental Scientist, California Department of Fish and Wildlife, Water Branch. February 21. Stockton, CA: California Department of Fish and Wildlife, Bay-Delta Region. Available: on SharePoint 

Herren, J. R., and S. S. Kawasaki. 2001. Inventory of Water Diversions in Four Geographic Areas in California’s Central Valley. Contributions to the Biology of Central Valley Salmonids. Edited by R. L. Brown. California Department of Fish and Game Fish Bulletin 179(2): 343–355. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626293.pdf. Available: on SharePoint 

Hestir, E. L., D. H. Schoellhamer, J. Greenberg, T. Morgan-King, and S. L. Ustin. 2016. The Effect of Submerged Aquatic Vegetation Expansion on a Declining Turbidity Trend in the Sacramento-San Joaquin River Delta. Estuaries and Coasts 39(4):1100-1112. Available: http://dx.doi.org/10.1007/s12237-015-0055-z. Available: on SharePoint 

Heublein, J. C., J. T. Kelly, C. E. Crocker, A. P. Klimley, and S. T. Lindley. 2009. Migration of Green Sturgeon (Acipenser medirostris) in the Sacramento River. Environmental Biology of Fishes 84: 245–258. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626160.pdf. Available: on SharePoint 

Heublein, J., R. Belmer, R. D. Chase, P. Doukakis, M. Gingras, D. Hampton, J. A. Israel, Z. J. Jackson, R. C. Johnson, O. P. Langness, S. Luis, E. Mora, M. L. Moser, L. Rohrbach, A. M. Seesholtz, T. Sommer, and J. S. Stuart. 2017. Life History and Current Monitoring Inventory of San Francisco Estuary Sturgeon. National Marine Fisheries Service, NOAA Technical Memorandum NOAA-TM-NMFS-SWFSC-589. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626323.pdf. Available: on SharePoint 

Hilborn, R., S. P. Cox, F. M. D. Gulland, D. G. Hankin, N. T. Hobbs, D. E. Schindler, and A. W. Trites. 2012. The Effects of Salmon Fisheries on Southern Resident Killer Whales: Final Report of the Independent Science Panel. Prepared for National Marine Fisheries Service and Fisheries and Oceans Canadas. Available: https://www.raincoast.org/wp-content/uploads/2009/07/kw-effects_of_salmon_fisheries_on_srkw-final-rpt.pdf. Available: on SharePoint 

Hinrichsen, R. A., D, J. Hasselman, C. C. Ebbesmeyer, B. A. Shields. 2013. The Role of Impoundments, Temperature, and Discharge on Colonization of the Columbia River Basin, USA. Transactions of the American Fisheries Society 142(4): 887–900 Available: on SharePoint 

Houlton, Benjamin, Jay Lund. (University of California, Davis). 2018. Sacramento Summary Report. California’s Fourth Climate Change Assessment. Publication number: SUM-CCCA4-2018-002. Available: https://www.energy.ca.gov/sites/default/files/2019-11/Reg_Report-SUM-CCCA4-2018-002_SacramentoValley_ADA.pdf. Available: on SharePoint 

Huber, E. R., and S. M. Carlson. 2015. Temporal Trends in Hatchery Releases of Fall-Run Chinook Salmon in California's Central Valley. San Francisco Estuary and Watershed Science 13(2). Available: https://nature.berkeley.edu/carlsonlab/wp-content/uploads/2016/01/Huber_Carlson_2015_SFEWS.pdf. Available: on SharePoint 

Hutton, P. H., J. S. Rath, L. Chen, M. J. Ungs, and S. B. Roy. 2015. Nine Decades of Salinity Observations in the San Francisco Bay and Delta: Modeling and Trend Evaluations. Journal of Water Resources Planning and Management 142(3):04015069. Available: https://pdfs.semanticscholar.org/3699/94b86b4be682760639bb345f1396e566c025.pdf. Available: on SharePoint 

ICF International. 2015. Butte Regional Conservation Plan Public Draft Environmental Impact Statement/Environmental Impact Report. May. (ICF 00736.10.) Sacramento, CA. Prepared for Butte County Association of Governments, Chico, CA. Available: on SharePoint 

ICF International. 2016. Biological Assessment for the California WaterFix. July. (ICF 00237.15.) Sacramento, CA. Prepared for U.S. Department of the Interior, Bureau of Reclamation, Sacramento, CA. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/exhibit104/docs/1_Cover_TitlePage_TOC_RevisedDraftBA.pdf. Available: on SharePoint 

Independent Review Panel. 2011. Report of the 2011 Independent Review Panel (IRP) on the Implementation of Reasonable and Prudent Alternative (RPA) Actions Affecting the Operations Criteria And Plan (OCAP) for State/Federal Water Operations. Prepared by J. J. Anderson, J. A. Gore, R. T. Kneib, M.S. Lorang, and J. Van Sickle. Delta Stewardship Council/Delta Science Program. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/2019-04-22_IRP_OCAP_RPA_2011_Final_Report_v2.pdf. Available: on SharePoint 

Interagency Ecological Program Management, Analysis, and Synthesis Team (IEP MAST). 2015. An updated conceptual model of Delta Smelt biology: our evolving understanding of an estuarine fish. Technical Report 90. January. Interagency Ecological Program for the San Francisco Bay/Delta Estuary, Sacramento, CA. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1089 IEP_MAST_Team_2015_Delta_Smelt_MAST_Synthesis_Report_January 2015.pdf. Available: on SharePoint 

Jabusch, T., A. Melwani, K. Ridolfi, and M. Connor. 2008. Effects of Short-term Water Quality Impacts Due to Dredging and Disposal on Sensitive Fish Species in San Francisco Bay. Prepared for U.S. Army Corps of Engineers, San Francisco District. September. Oakland, CA: San Francisco Estuary Institute. Available: https://www.spn.usace.army.mil/Portals/68/docs/Dredging/LMTS/S and S/6 - Water Quality.pdf. Available: on SharePoint 

Jassby, A. D., W. J. Kimmerer, S. G. Monismith, C. Armor, J. E. Cloern, T. M. Powell, J. R. Schubel, and T. J. Vendlinski. 1995. Isohaline Position as a Habitat Indicator for Estuarine Populations. Ecological Applications 5: 272–289. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/SWC/swc_3.pdf. Available: on SharePoint 

Jassby, A. D., J. E. Cloern, and B. E. Cole. 2002. Annual Primary Production: Patterns and Mechanisms of Change in a Nutrient-rich Tidal Ecosystem. Limnology and Oceanography 47: 698–712. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/srcsd/engle52bjassby.pdf. Available: on SharePoint 

Jeffries, K. M., R. E. Connon, B. E. Davis, L. M. Komoroske, M. T. Britton, T. Sommer, A. E. Todgham, and N. A. Fangue. 2016. Effects of high temperatures on threatened estuarine fishes during periods of extreme drought. Journal of Experimental Biology 219(11):1705-1716. Available: https://cob.silverchair-cdn.com/cob/content_public/journal/jeb/219/11/10.1242_jeb.134528/5/jeb134528.pdf?Expires=1693322221&Signature=xg2gLGX8EOtm0GeuNlPkIuMdQRq6rV0s0BAO1uksJDGPTIkbpXqcE6349rkF3pqe29frcTbAYvH2tR5F6t85nJ72Ra2NgG1-P8o0tMgqX3h5rvsTpijn9Ty7oawBABJxrDUFGogzc2lcmRm~k9f2ur6i1citETew0Y5-el9KEUdAyGEXXKYRt-VmFZbmiFpKCkfh~mflTzFwC~GAoqkfSS8-fR3AgU6U2zcAWGm5SzGzscHN6uDjcXP8yWG7sHCTqJ4JqUfeewFxgwz-~uqV4mnqsO5rmIK3WSqDJ~JMgRG-3zM2e1zoLM52inBC1drviS2N4VUVrVSkxQ5XeEQTLA__&Key-Pair-Id=APKAIE5G5CRDK6RD3PGA. Available: on SharePoint 

Johnson, R. R., D. C. Weigand, and F. W. Fisher. 1992. Use of Growth Data to Determine the Spatial and Temporal Distribution of Four Runs of Juvenile Chinook Salmon in the Sacramento River, California. North Central Valley Fishery Resource Office, Red Bluff, CA. Available: on SharePoint 

Johnson, M. L, I. Werner, S. J. Teh, and F. Loge. 2010. Evaluation of Chemical, Toxicological, and Histopathologic Data to Determine Their Role in the Pelagic Organism Decline. Available: Final report to the California State Water Resources Control Board and Central Valley Regional Water Quality Control Board. University of California, Davis. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626347.pdf. Available: on SharePoint 

Johnston, M., J. Frantzich, M. B. Espe, P. Goertler, G. Singer, T. Sommer, and A. P. Klimley. 2020. Contrasting the migratory behavior and stranding risk of White Sturgeon and Chinook Salmon in a modified floodplain of California. Environmental Biology of Fishes 103:481-493. Available: on SharePoint. Copyright protected. See introduction for more information

Katz, J. V., C. Jeffres, J. L. Conrad, T. R. Sommer, J. Martinez, S. Brumbaugh, N. Corline, and P. B. Moyle. 2017. Floodplain Farm Fields Provide Novel Rearing Habitat for Chinook Salmon. PLOS ONE. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626626.pdf. Available: on SharePoint 

Kimmerer, W. J. 2002a. Physical, biological, and management responses to variable freshwater flow into the San Francisco Estuary. Estuaries 25: 1275–1290. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/sldmwa/kimmerer2002b.pdf. Available: on SharePoint 

Kimmerer, W. J. 2002b. Effects of freshwater flow on abundance of estuarine organisms: physical effects or trophic linkages. Marine Ecology Progress Series 243:39–55. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/swrcb/swrcb_kimmerer2002.pdf. Available: on SharePoint 

Kimmerer, W. J. 2004. Open Water Processes of the San Francisco Estuary: from Physical Forcing to Biological Responses. San Francisco Estuary and Watershed Science 2 (1). Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/dwr_575.pdf. Available: on SharePoint 

Kimmerer, W. J. 2005a. Long-Term Changes in Apparent Uptake of Silica in the San Francisco Estuary. Limnology and Oceanography 50:793–798. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/srcsd/kimmererestuary.pdf. Available: on SharePoint 

Kimmerer, W.J. 2006. 6—Response of Anchovies Dampens Effects of the Invasive bivalve Corbula amurensis on 26 the San Francisco Estuary Foodweb. Marine Ecology Progress Series 324:207–218. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/sfwc/spprt_docs/sfwc_exh3_kimmerer_resoponse_of_anchovies.pdf. Available: on SharePoint 

Kimmerer, W. J., and M. Nobriga. 2008. Investigating Particle Transport and Fate in the Sacramento San Joaquin Delta Using a Particle Tracking Model. San Francisco Estuary and Watershed Science 6(1). Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/dd_jardins/part2_surrebuttal/ddj_336.pdf. Available: on SharePoint 

Kimmerer, W. J. and J. K. Thompson. 2014. Phytoplankton Growth Balanced by Clam and Zooplankton Grazing and Net Transport into the Low-Salinity Zone of the San Francisco Estuary. Estuaries and Coasts, Pre-print published online: January 7. Available: on SharePoint 

Kimmerer, W. J., E. Gartside, and J. J. Orsi. 1994. Predation by an Introduced Clam as the Likely Cause of Substantial Declines in Zooplankton of San Francisco Bay. Marine Ecology Progress Series 113:81–-93. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/sfwc/spprt_docs/sfwc_exh3_kimmerer_predation_by_introduced_clam.pdf - :~:text=is%20the%20cause%20of%20the%20reduced%20survlval%20of,composltlon%20of%20inshore%20zooplankton%20KEY%20WORDS-%20Potamocorbula%20amurensls.. Available: on SharePoint 

Kimmerer, W. J., J. R. Burau, W. A. Bennett. 1998. Tidally Oriented Vertical Migration and Position Maintenance of Zooplankton in a Temperate Estuary. Limnol. Oceanogr. 43(7): 1697–1709. Available: https://aslopubs.onlinelibrary.wiley.com/doi/pdf/10.4319/lo.1998.43.7.1697. Available: on SharePoint 

Kimmerer, W. J., J. H. Cowan, Jr., L. W. Miller, and K. A. Rose. 2000. Analysis of an Estuarine Striped Bass (Morone saxatilis) Population: Influence of Density-dependent Mortality Between Metamorphosis and Recruitment. Canadian Journal of Fisheries and Aquatic Sciences 57: 478–486. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/sldmwa/kimmereretal2000.pdf. Available: on SharePoint 

Kimmerer, W. J., N. Ferm, M. H. Nicolini, C. Penalva. 2005b. Chronic Food Limitation of Egg Production in Populations of Copepods of the Genus Acartia in the San Francisco Estuary. Estuaries 28(4): 541–550. August. Available: on SharePoint  

Kimmerer, W., L. Brown, S. Culberson, P. Moyle, M. Nobriga, and J. Thompson. 2008. Aquatic Ecosystems. Pages 73–101 in M. Healey, editor, The State of Bay-Delta Science. CALFED Science Program. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/swrcb/swrcb_kimmerer2008_2.pdf. Available: on SharePoint 

Kimmerer, W. J., E. S. Gross, and M. L. MacWilliams. 2009. Is the Response of Estuarine Nekton to Freshwater Flow in the San Francisco Estuary Explained by Variation in Habitat Volume? Estuaries and Coasts 32:375–389. Doi 10.1007/s12237-008-9124-x. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/kimmerer_etal_ec_2009.pdf. Available: on SharePoint 

Kimmerer, W. J., T. R. Ignoffo, K. R. Kayfetz, and A. M. Slaughter. 2018. Effects of Freshwater Flow and Phytoplankton Biomass on Growth, Reproduction, and Spatial Subsidies of the Estuarine Copepod Pseudodiaptomus forbesi. Hydrobiologia 807:113–130. Available: https://link.springer.com/content/pdf/10.1007/s10750-017-3385-y.pdf. Available: on SharePoint 

Kimmerer, W. J., E. S. Gross, A. M. Slaughter, and J. R. Durand. 2019. Spatial Subsidies and Mortality of an Estuarine Copepod Revealed Using a Box Model. Estuaries and Coasts 42(1):218–236. Available: on SharePoint 

Kuivila, K. M., and C. G. Foe. 1995. Concentrations, Transport and Biological Effects of Dormant Spray Pesticides in the San Francisco Estuary, California. Environmental Toxicology and Chemistry 14: 1141–1150. Available: on SharePoint. Copyright protected. See introduction for more information

Lee, D. P., and J. Chilton. 2007. Hatchery and Genetic Management Plan for Nimbus Fish Hatchery Winter-Run Steelhead Program. Draft Report. Prepared by CDFG under Contract 03CS200006 Modification 0004 with Bureau of Reclamation, Folsom, CA, and Nimbus Fish Hatchery, Rancho Cordova, CA. Available: on SharePoint 

Lee, G. F., and A. Jones-Lee. 2003. Summary of Findings on the Causes and Factors Influencing Low DO in the San Joaquin River Deep Water Ship Channel near Stockton, CA. Report of G. Fred Lee & Associates, El Macero, CA. March. Available: https://www.gfredlee.com/SJR-Delta/SynthesisRptpaper.pdf. Available: on SharePoint 

Lee, J. W., De Riu, N., Lee, S., Bai, S. C., Moniello, G., and S.S. Hung. 2011. Effects of dietary methylmercury on growth performance and tissue burden in juvenile green (Acipenser medirostris) and white sturgeon (A. transmontanus). Aquatic Toxicology, 105(3-4): , 227–-234. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626412.pdf. Available: on SharePoint 

Lee, P., and J. Manning. 2020. Mercury Imports and Exports of Four Tidal Wetlands in the Sacramento-San Joaquin Delta, Yolo Bypass, and Suisun Marsh for Delta Mercury Control Program Compliance. California Department of Water Resources. 

Lehman, P. W., G. Boyer, C. Hall, and K. Gehrts. 2005. Distribution and Toxicity of a New Colonial Microcystis aeruginosa Bloom in the San Francisco Bay Estuary, California. Hydrobiologia (2005) 541: 87–99. DOI 10.1007/s10750-004-4670-0. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/DWR-721.pdf. Available: on SharePoint 

Lehman, P. W., T. Sommer, and L. Rivard. 2008a. The Influence of Floodplain Habitat on the Quantity of Riverine Phytoplankton Carbon Produced During the Flood Season in San Francisco Estuary. Aquatic Ecology 42: 363–378. Available: on SharePoint 

Lehman, P. W., G. Boyer, M. Satchwell, and S. Waller. 2008b. The Influence of Environmental Conditions on the Seasonal Variation of Microcystis Cell Density and Microcystins Concentration in San Francisco Estuary. Hydrobiologia 600(1): 187–204. Available: on SharePoint 

Lehman, P. W., S. J. Teh, G. L. Boyer, M. L. Nobriga, E. Bass, C. Hogle. 2010. Initial Impacts of Microcystis aeruginosa Blooms on the Aquatic Food Web in the San Francisco Estuary. Hydrobiologia (2010) 637: 229–248. DOI 10.1007/s10750-009-9999-y.  Available: on SharePoint 

Lindley, S. T., R. Schick, E. Mora, P. B. Adams, J. J. Anderson, S. Greene, C. Hanson, B. P. May, D. R. McEwan, R. B. MacFarlane, C. Swanson, and J. G. Williams. 2007. Framework for Assessing Viability of Threatened and Endangered Chinook Salmon and steelhead in the Sacramento-San Joaquin Basin. San Francisco Estuary and Watershed Science 5: 26. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/nmfs/spprt_docs/nmfs_exh4_lindley_etal_2007.pdf. Available: on SharePoint 

Linville, R.G., Luoma, S.N., Cutter, L. and Cutter, G.A., 2002. Increased selenium threat as a result of invasion of the exotic bivalve Potamocorbula amurensis into the San Francisco Bay-Delta. Aquatic Toxicology, 57(1-2), pp.51-64. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626750.pdf - :~:text=Following%20the%20aggressive%20invasion%20of%20the%20bivalve%2C%20Potamocorbula,earlier%20studies%2C%20and%201990%20concentrations%20in%20benthic%20predators. Available: on SharePoint 

Loboschefsky, E., G. Benigno, T. Sommer, K. Rose, T. Ginn, A. Massoudieh, and F. Loge. 2012. Individual-level and Population-level Historical Prey Demand of San Francisco Estuary Striped Bass Using a Bioenergetics Model. San Francisco Estuary and Watershed Science, 10(1). Available: https://escholarship.org/uc/item/1c788451. Available: on SharePoint 

Lukas, J. A. and D. J. Orth. 1995. Factors Affecting Nesting Success of Smallmouth Bass in a Regulated Virginia Stream. Transactions of the American Fisheries Society 124: 726–735.McKechnie 1966. Available: https://www.researchgate.net/publication/254328688_Factors_Affecting_Nesting_Success_of_Smallmouth_Bass_in_a_Regulated_Virginia_Stream. Available: on SharePoint 

Mac Nally, R., Thomson, J. R., Kimmerer, W. J., Feyrer, F., Newman, K. B., Sih, A. et al. 2010. Analysis of Pelagic Species Decline in the Upper San Francisco Estuary Using Multivariate Autoregressive Modeling (MAR). Ecological Applications 20(5): 1417–1430. Available: macnallyetal2010.pdf (ca.gov). Available: on SharePoint 

Maguire, A., C. Stuart, M. Bedwell, B. Davis, and J. Frantzich. 2020. North Delta Flow Action 2019: Continuous Water Quality Monitoring in the Yolo Bypass. Poster presentation at 2020 Interagency Ecological Program Workshop. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=182044. Available: on SharePoint 

Mahardja, B., J. L. Conrad, L. Lusher. And B. Schreier. 2016. Abundance Trends, Distribution, and Habitat Associations of the Invasive Mississippi Silverside (Menidia audens) in the Sacramento–San Joaquin Delta, California, USA. San Francisco Estuary and Watershed Science, 14(1). Available: https://www.researchgate.net/publication/298901391_Abundance_Trends_Distribution_and_Habitat_Associations_of_the_Invasive_Mississippi_Silverside_Menidia_audens_in_the_Sacramento-San_Joaquin_Delta_California_USA. Available: on SharePoint 

Mahardja, B., M. J. Farruggia, B. Schreier, and T. Sommer. 2017. Evidence of a Shift in the Littoral Fish Community of the Sacramento-San Joaquin Delta. PLoS ONE 12(1):e0170683. Available: (PDF) Evidence of a Shift in the Littoral Fish Community of the Sacramento-San Joaquin Delta (researchgate.net). Available: on SharePoint 

Marhardja, B., J. A. Hobbs, N. Ikemiyagi, A. Benjamin, and A. J. Finger. 2019. Role of Freshwater Floodplain-Tidal Slough Complex in the Persistence of the Endangered Delta Smelt. PLOS ONE 14(1):e2o8084. Available: https://doi.org/10.1371/journal.pone.0208084. 

Manly, B. F. J., D. Fullerton, A. N. Hendrix, and K. P. Burnham. 2015. Comments on Feyrer et al. “Modeling the Effects of Future Outflow on the Abiotic Habitat of an Imperiled Estuarine Fish”. Estuaries and Coasts 38(5):1815–1820. Available: https://www.researchgate.net/publication/270516736_Comments_on_Feyrer_et_al_Modeling_the_Effects_of_Future_Outflow_on_the_Abiotic_Habitat_of_an_Imperiled_Estuarine_Fish. Available: on SharePoint 

Marschall, E. A., D. C. Glover, M. E. Mather, D. L. Parrish. 2020. Modeling larval American shad recruitment in a large river. Special Section: 4th Mississippi–Yangtze River Basins Symposium. North American Journal of Fisheries Management. Available: on SharePoint. Copyright protected. See introduction for more information

Marston, D., C. Mesick, A. Hubbard, D. Stanton, S. Fortmann-Roe, S. Tsao, and T. Heyne. 2012. Delta Flow Factors Influencing Stray Rate of Escaping Adult San Joaquin River fall-run Chinook Salmon (Oncorhynchus tshawytscha). San Francisco Estuary and Watershed Science, 10(4). Available: https://escholarship.org/content/qt6f88q6pf/qt6f88q6pf_noSplash_358d88d7303534df0bf00c41458125d2.pdf?t=q5a12f. Available: on SharePoint 

Martin, B. T., A. Pike, S. N. John, N. Hamda, J. Roberts, S. T. Lindley, and E. M. Danner. 2016. Phenomenological vs. biophysical models of thermal stress in aquatic eggs. Ecology Letters 2016. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/Martin_et_al-2017-Ecology_Letters.pdf. Available: on SharePoint 

Martin, B. T., A. Pike, S. N. John, N. Hamda, J. Roberts, S. T. Lindley, and E. M. Danner. 2017. Phenomenological vs. biophysical models of thermal stress in aquatic eggs. Ecology Letters 20: 50–59. doi: 10.1111/ele.12705. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/Martin_et_al-2017-Ecology_Letters.pdf. Available: on SharePoint 

Matern, S. A., P. B. Moyle, and L. C. Pierce. 2002. Native and Alien Fishes in a California Estuarine Marsh: Twenty-one Years of Changing Assemblages. Transactions of the American Fisheries Society 131(5): 797–816, DOI: 10.1577/1548-8659(2002)131<0797:NAAFIA>2.0.CO;2. Available: https://www.researchgate.net/publication/237621948_Native_and_Alien_Fishes_in_a_California_Estuarine_Marsh_Twenty-One_Years_of_Changing_Assemblages. Available: on SharePoint 

McCauley, R., J. Fewtrell, and A. Popper. 2003. High Intensity Anthropogenic Sound Damages Fish Ears. The Journal of the Acoustical Society of America 113:638–42. 10.1121/1.1527962. Available: https://www.researchgate.net/publication/10925877_High_intensity_anthropogenic_sound_damages_fish_ears. Available: on SharePoint 

McMillen, LLC. 2013. Glenn-Colusa Irrigation District (GCID) Gradient Facility, Sacramento River, CA. Water Data Technical Memorandum. June 21. Available: on SharePoint 

Mefford, B., and Z. Sutphin. 2008. Intake Diversion Dam Fish Screens. Evaluation of Fish Screens for Protecting Early Life Stages of Pallid Sturgeon. Hydraulic Laboratory Report HL-2007-010. Draft. September. Denver, CO: U.S. Bureau of Reclamation, Technical Service Center, Water Resources Research Laboratory. Available: https://usbr.gov/gp/mtao/loweryellowstone/EA/Final EA/Support/Reclamation 2008 Intake Diversion Dams Fish Screens.pdf. Available: on SharePoint 

Merz, J., B. Rook, C. Watry, and S. Zeug. 2012. Evaluation of the 2008-2010 Sailor Bar Gravel Placements on the Lower American River, California. 2010-2011 Data Report. Prepared for City of Sacramento Water Forum, and U.S. Bureau of Reclamation and U.S. Fish and Wildlife Service, CVPIA Gravel Program. Contract 2010-1049. Available: https://www.researchgate.net/publication/267365136_Evaluation_of_the_2008-2010_Sailor_Bar_Gravel_Placements_on_the_Lower_American_River_California. Available: on SharePoint 

Merz, J., P. Bergman, J. Melgo, and S. Hamilton. 2013. Longfin Smelt: Spatial Dynamics and Ontogeny in the San Francisco Estuary, California. California Fish and Game 99:122–148. Available: https://www.researchgate.net/publication/259641846_Longfin_smelt_spatial_dynamics_and_ontogeny_in_the_San_Francisco_Estuary_California. Available: on SharePoint 

Michel, C. J. 2010. River and Estuarine Survival and Migration of Yearling Sacramento River Chinook Salmon (Oncorhynchus tshawytscha) Smolts and the Influence of Environment. Master’s Thesis. University of California, Santa Cruz. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/michel_2010.pdf. Available: on SharePoint 

Michel, C. J., A. J. Ammann, S. T. Lindley, P. T. Sandstrom, E. D. Chapman, M. J. Thomas, G. P. Singer, A. P. Klimley, and R. B. MacFarlane. 2015. Chinook Salmon Out-Migration Survival in Wet and Dry Years in California's Sacramento River. Canadian Journal of Fisheries and Aquatic Sciences 72: 1749–1759. Available: https://www.researchgate.net/publication/282620085_Chinook_salmon_outmigration_survival_in_wet_and_dry_years_in_California's_Sacramento_River. Available: on SharePoint 

Michel, C. J. 2018. Decoupling outmigration from marine survival indicates outsized influence of streamflow on cohort success for California's Chinook salmon populations. Canadian Journal of Fisheries and Aquatic Sciences. Available: https://doi.org/10.1139/cjfas-2018-0140. Available: on SharePoint 

Michel, C., J. Notch, F. Cordoleani, A. Ammann, and E. Danner. 2021. Nonlinear survival of imperiled fish informs managed flows in a highly modified river. Ecosphere. DOI: 10.1002/ecs2.3498. Available: https://esajournals.onlinelibrary.wiley.com/doi/epdf/10.1002/ecs2.3498. Available: on SharePoint 

Mitchell, C. P. J, T. E. Jordan, A. Heyes, and C. C. Gilmour. 2012. Tidal Exchange of Total Mercury and Methylmercury Between a Salt Marsh and a Chesapeake Bay Sub-Estuary. Biogeochemistry 111 (1-3):583–600. Available: https://doi.org/10.1007/s10533-011-9691-y. Available: on SharePoint

Moser, M. L., A. D. Jackson, M. C. Lucas, and R. P. Mueller. 2015. Behavior and potential threats to survival of migrating lamprey ammocoetes and macrophthalmia. Reviews in Fish Biology and Fisheries 25(1):103-116. Available: https://www.salmonrecovery.gov/doc/default-source/default-document-library/behavior-and-potential-threats-to-survival-of-migrating-ammocoetes-and-macrophthalmiadb2d23bab16b6cf0b057ff00002e0fb7.pdf?sfvrsn=0. Available: on SharePoint 

Mount, J., W. Bennett, J. Durand, W. Fleenor, E. Hanak, J. Lund, and P. B. Moyle. 2012. Aquatic Ecosystem Stressors in the Sacramento–San Joaquin Delta. Public Policy Institute of California, San Francisco. Available: https://www.ppic.org/wp-content/uploads/content/pubs/report/R_612JMR.pdf. Available: on SharePoint 

Moyle, P. B. 2002. Inland Fishes of California. Second edition. University of California Press, Berkeley.  Copyright protected. See introduction for more information

Moyle, P. B., R. D. Baxter, T. Sommer, T. C. Foin, and S. A. Matern. 2004. Biology and Population Dynamics of Sacramento Splittail (Pogonichthys macrolepidotus) in the San Francisco Estuary: a Review. San Francisco Estuary and Watershed Science 2:3. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1119 Moyle_et_al_2004_splittail.pdf. Available: on SharePoint 

Moyle, P. B., and W. A. Bennett. 2008. The Future of the Delta Ecosystem and Its Fish. Technical Appendix D, Comparing Futures for the Sacramento–San Joaquin Delta. Public Policy Institute of California, San Francisco. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/sldmwa/moyleandbennett2008.pdf. Available: on SharePoint 

Moyle, P., W. Bennett, J. Durand, W. Fleenor, B. Gray, E. Hanak, J. Lund, and J. Mount. 2012. Where the Wild Things Aren’t: Making the Delta a Better Place for Native Species. Public Policy Institute of California, San Francisco, CA. Available: http://www.ppic.org/content/pubs/report/R_612PMR.pdf. Available: on SharePoint 

Moyle, P. B., R. M. Quiñones, J. V. Katz and J. Weaver. 2015. Fish Species of Special Concern in California. Sacramento: California Department of Fish and Wildlife. Available:https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=104268&inline. Available: on SharePoint 

Mueller-Solger, A. B., A. D. Jassby, and D. C. Muller-Navarra. 2002. Nutritional Quality of Food Resources for Zooplankton (Daphnia) in a Tidal Freshwater System (Sacramento–San Joaquin River Delta). Limnol. Oceanogr. 47(5): 1468–1476. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/CDWA et al/SDWA_231.pdf. Available: on SharePoint 

Murphy, D.D. and P.S. Weiland. 2019. The Low-Salinity Zone in the San Francisco Estuary as a Proxy for Delta Smelt Habitat: A Case Study in the Misuse of Surrogates in Conservation Planning. Ecological Indicators 105:29–35. Available: https://doi.org/10.1016/j.ecolind.2019.05.053. Available: on SharePoint 

Mussen, T. D., D. Cocherell, J. B. Poletto, J. S. Reardon, Z. Hockett, A. Ercan, H. Bandeh, M. L. Kavvas, J. J. Cech, and N. A. Fangue. 2014. Unscreened Water-Diversion Pipes Pose an Entrainment Risk to the Threatened Green Sturgeon, Acipenser medirostris. PLoS ONE 9: e86321. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626224.pdf. Available: on SharePoint 

Myrick, C. A., and J. J. Cech. 2000. Swimming Performances of Four California Stream Fishes: Temperature Effects. Environmental Biology of Fishes 58(3):289–295. Available: https://www.fs.usda.gov/biology/nsaec/fishxing/fplibrary/Myrick and Cech-2000.pdf. Available: on SharePoint 

National Marine Fisheries Service. 2008. Biological Opinion on 24,000 Linear Feet of Sacramento River Bank Protection Project, Phase II. 2007/07158. July 2, 2008. Long Beach, CA. Available: on SharePoint 

National Marine Fisheries Service. 2009. Biological Opinion and Conference Opinion on the Long-Term Operations of the Central Valley Project and State Water Project. National Marine Fisheries Service Southwest Region. June 4. Available: https://www.fisheries.noaa.gov/resource/document/biological-opinion-and-conference-opinion-long-term-operations-central-valley. Available: on SharePoint 

National Marine Fisheries Service. 2014. Recovery Plan for the Evolutionarily Significant Units of Sacramento River Winter-Run Chinook Salmon and Central Valley Spring-Run Chinook Salmon and the Distinct Population Segments of California Central Valley Steelhead. National Marine Fisheries Service West Coast Region. July. Available: https://www.fisheries.noaa.gov/resource/document/recovery-plan-evolutionarily-significant-units-sacramento-river-winter-run. Available: on SharePoint 

National Marine Fisheries Service. 2016. Central Valley Recovery Domain 5-Year Review: Summary and Evaluation of California Central Valley Steelhead Distinct Population Segment. National Marine Fisheries Service, West Coast Region. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626245.pdf. Available: on SharePoint 

National Marine Fisheries Service. 2017. Endangered Species Act Section 7(a)(2) Biological Opinion, Magnuson-Stevens Fishery Conservation and Management Act Essential Fish Habitat Response, and Fish and Wildlife Coordination Act Recommendations for the California WaterFix Project in Central Valley, California. NMFS Consultation Number: WCR-2016-5506. June 16. Portland, OR: United States Department of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service, West Coast Region. Available: on SharePoint 

National Marine Fisheries Service. 2018a. NOAA Fisheries West Coast Region Anadromous Salmonid Passage Design Guidelines. Review Draft. August 16. National Marine Fisheries Service, West Coast Region, Portland, Oregon. Available: on SharePoint 

National Marine Fisheries Service. 2018b. Recovery Plan for the Southern Distinct Population Segment of North American Green Sturgeon (Acipenser medirostris). California Central Valley Area Office, National Marine Fisheries Service, Sacramento, CA. Available: https://www.fisheries.noaa.gov/resource/document/final-recovery-plan-southern-distinct-population-segment-north-american-green Available: on SharePoint

National Marine Fisheries Service. 2019a. Biological Opinion on Long-term Operation of the Central Valley Project and the State Water Project. Consultation Tracking Number: WCRO-2016-00069. West Coast Region, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, U.S. Department of Commerce. October 21. Available: https://repository.library.noaa.gov/view/noaa/22046. Available: on SharePoint 

National Marine Fisheries Service. 2019b. Endangered Species Act Section 7(a)(2) Biological Opinion, and Magnuson-Stevens Fishery Conservation and Management Act Essential Fish Habitat Response for the Yolo Bypass Salmonid Habitat Restoration and Fish Passage Project. May 10. West Coast Region, National Marine Fisheries Service, Sacramento, CA. Available: on SharePoint 

National Research Council. 2012. Sustainable Water and Environmental Management in the California Bay-Delta. Prepared by the Committee on Sustainable Water and Environmental Management in the California Bay Delta. The National Academies Press, Washington, D.C. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/dfg/cdfgnationalresearchcouncil2012a.pdf. Available: on SharePoint 

Nixon, S. W. 1988. Physical Energy Inputs and the Comparative Ecology of Lake and Marine Ecosystems. Limnology and Oceanography, Part II 33: 1005–1025. Available: https://aslopubs.onlinelibrary.wiley.com/doi/epdf/10.4319/lo.1988.33.4part2.1005. Available: on SharePoint 

Nobriga, M. L., T. R. Sommer, F. Feyrer, and K. Fleming. 2008. Long-Term Trends in Summertime Habitat Suitability for Delta Smelt, Hypomesus transpacificus. San Francisco Estuary and Watershed Science 6:Article 1. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/nobriga_etal_2008.pdf. Available: on SharePoint 

Nobriga, M. L. 2009. Bioenergetic Modeling Evidence for a Context-dependent Role of Food Limitation in California’s Sacramento–San Joaquin Delta. California Fish and Game 95(3): 111–121. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/nobriga_2009.pdf. Available: on SharePoint 

Nobriga, M. L., and F. Feyrer. 2007. Shallow-Water Piscivore-Prey Dynamics in California’s Sacramento–San Joaquin Delta. San Francisco Estuary and Watershed Science 5(2): Article 4. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/sfwc/spprt_docs/sfwc_exh3_nobriga_shallow_water_piscivore.pdf. Available: on SharePoint 

Nobriga, M. L., Z. Matica, and Z. P. Hymanson. 2004. Evaluating Entrainment Vulnerability to Agricultural Irrigation Diversions: A Comparison among Open-Water Fishes. In F. Feyrer, L. R. Brown, R. L. Brown, and J. J. Orsi, editors, Early Life History of Fishes in the San Francisco Estuary and Watershed. American Fisheries Society Symposium 39: 281–295. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/wq_control_plans/1995wqcp/exhibits/doi/doi-exh-48l.pdf. Available: on SharePoint 

Nobriga, M. L., F. Feyrer, R. D. Baxter, and M. Chotkowski. 2005. Fish Community Ecology in an Altered River Delta: Spatial Patterns in Species Composition, Life History Strategies and Biomass. Estuaries 28(5): 776–785. Available: on SharePoint. Copyright protected. See introduction for more information

Nobriga, M. L., F. Feyrer, and R. D. Baxter. 2006. Aspects of Sacramento Pikeminnow Biology in Nearshore Habitats of the Sacramento-San Joaquin Delta, California. Western North American Naturalist 66(1):106–114. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/swrcb/swrcb_nobriga2006.pdf. Available: on SharePoint 

Nobriga, M. L., T. R. Sommer, F. Feyrer, and K. Fleming. 2008. Long-term Trends in Summertime Habitat Suitability for Delta Smelt, Hypomesus transpacificus. San Francisco Estuary and Watershed Science 6: Article 1. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/nobriga_etal_2008.pdf. Available: on SharePoint 

Nobriga, M. L., and J. A. Rosenfield. 2016. Population Dynamics of an Estuarine Forage Fish: Disaggregating Forces Driving Long-Term Decline of Longfin Smelt in California's San Francisco Estuary. Transactions of the American Fisheries Society 145(1):44-58. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/NRDC_TBI_DOW/NRDC-36.pdf. Available: on SharePoint 

Northern California Water Association. 2018. Food Production Program Continues to Improve Delta Smelt Conditions. October 8. Available: https://mavensnotebook.com/wp-content/uploads/2018/10/FoodWeb_PressRelease_FactSheet.pdf. Available: on SharePoint 

Orlando, J. L., M. De Parsia, C. Sanders, M. Hladik, and J. Frantzich. 2020. Pesticide concentrations associated with augmented flow pulses in the Yolo Bypass and Cache Slough Complex, California. Open-File Report 2020-1076. Reston, VA: US Geological Survey. Available: https://pubs.usgs.gov/of/2020/1076/ofr20201076.pdf. Available: on SharePoint  

Orsi, J. and W. L. Mecum. 1986. Zooplankton Distribution and Abundance in the Sacramento–San Joaquin Delta in Relation to Certain Environmental Factors. Estuaries 9(4B):326–339. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/dfg/spprt_docs/1987/cdfg_exh35.pdf. Available: on SharePoint 

Pacific Fishery Management Council. 2018. Salmon Rebuilding Plan for Sacramento River Fall Chinook. Pacific Fishery Management Council, Portland, OR. Available: https://www.pcouncil.org/documents/2019/07/sacramento-river-fall-chinook-salmon-rebuilding-plan-regulatory-identifier-number-0648-bi04-july-2019.pdf/. Available: on SharePoint 

Palmer-Zwahlen, M., and B. Kormos. 2012. Recovery of Coded-Wire Tags from Chinook salmon in California’s Central Valley Escapement and Ocean Harvest in 2011. Fisheries Branch Administrative Report 2013-02. Available: https://www.bing.com/ck/a?!&&p=c017d38b9773f62bJmltdHM9MTY5MDMyOTYwMCZpZ3VpZD0wZWI3NzY0Zi05NWI4LTYwZjYtMjUyMS02NTdkOTRkNzYxNTImaW5zaWQ9NTE3NA&ptn=3&hsh=3&fclid=0eb7764f-95b8-60f6-2521-657d94d76152&psq=Recovery+of+Coded-Wire+Tags+from+Chinook+salmon+in+California%e2%80%99s+Central+Valley+Escapement+and+Ocean+Harvest+in+2011.+Fisheries+Branch+Administrative+Report+2013-02&u=a1aHR0cHM6Ly9ucm0uZGZnLmNhLmdvdi9GaWxlSGFuZGxlci5hc2h4P0RvY3VtZW50SUQ9MTYyMzU1JnVzZz1BT3ZWYXczd1NiZC16SmsxZVFhMDg1WHV4aXln&ntb=1. Available: on SharePoint 

Payne, T. R. and M. Allen. 2004. Evaluation of Project Effects on Instream Flows and Fish Habitat. Phase 2 Interim Report. SP F-16. Sacramento, CA. Prepared for T. J. Mills, T. Sommer, and B. Cavallo, Oroville Facilities Relicensing Environmental Work Group, DWR. Sacramento, CA. Available: on SharePoint 

Perry, R. W. 2010. Survival and migration dynamics of juvenile Chinook Salmon (Oncorhynchus tshawytscha) in the Sacramento–San Joaquin River Delta. Doctoral dissertation. University of Washington, Seattle. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/perry_et_al_2010.pdf. Available: on SharePoint 

Perry, R. W., J. G. Romine, S. J. Brewer, P. E. LaCivita, W. N. Brostoff, and E. D. Chapman. 2012. Survival and Migration Route Probabilities of Juvenile Chinook Salmon in the Sacramento-San Joaquin River Delta During the Winter of 2009–10. U.S. Geological Survey Open-File Report 2012-1200, 30 p. Available: https://pubs.usgs.gov/of/2012/1200/pdf/ofr20121200.pdf. Available: on SharePoint 

Perry, R. W., P. L. Brandes, J. R. Burau, P. T. Sandstrom, and J. R. Skalski. 2015. Effect of Tides, River Flow, and Gate Operations on Entrainment of Juvenile Salmon into the Interior Sacramento–San Joaquin River Delta. Transactions of the American Fisheries Society 144: 445–455. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626727.pdf. Available: on SharePoint 

Perry, R. W., A. C. Pope, J. G. Romine, P. L. Brandes, J. R. Burau, A. R. Blake, A. J. Ammann, C. J. Michel. 2018. Flow-Mediated Effects on Travel Time, Routing, and Survival of Juvenile Chinook Salmon in a Spatially Complex, Tidally Forced River Delta. Canadian Journal of Fisheries and Aquatic Sciences 75(11): 1886–1901. Available: on SharePoint. Copyright protected. See introduction for more information

Perry, R. W., A. C. Hansen, S. D. Evans, and T. J. Kock. 2019. Using the STARS Model to Evaluate the Effects of Two Proposed Projects for the Long-Term Operation of the State Water Project Incidental Take Permit Application and CEQA Compliance. Open-File Report 2019-1127. Version 2.0. February. U. S. Geological Survey, Reston, VA. Available: https://pubs.usgs.gov/of/2019/1127/ofr20191127.pdf. Available: on SharePoint 

Plumb, J. M., N. S. Adams, R. W. Perry, C. M. Holbrook, J. G. Romine, A. R. Blake, and J. R. Burau. 2016. Diel Activity Patterns of Juvenile Late Fall-run Chinook Salmon with Implications for Operation of a Gated Water Diversion in the Sacramento–San Joaquin River Delta. River Research and Applications 32(4):711–720. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626468.pdf. Available: on SharePoint 

Popper, A., and M. Hastings. 2009. The effects of anthropogenic sources of sound on fishes. Journal of Fish Biology 75(3):455-489. Available: https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1095-8649.2009.02319.x. Available: on SharePoint 

Poytress, W. R., J. J. Gruber, and J. P. Van Eenennaam. 2011. 2011 Upper Sacramento River Green Sturgeon Spawning Habitat and Larval Migration Surveys. Annual Report of U.S. Fish and Wildlife Service to Bureau of Reclamation, Red Bluff, CA. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626385.pdf. Available: on SharePoint 

Poytress, W. R., J. J. Gruber, F. D. Carrillo, and S. D. Voss. 2014. Compendium Report of Red Bluff Diversion Dam Rotary Screw Trap Juvenile Anadromous Fish Production Indices for Years 2002–2012. Prepared for California Department of Fish and Wildlife Ecosystem Restoration Program and the U.S. Bureau of Reclamation. July. U.S. Fish and Wildlife Service, Red Bluff, CA. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1133 Poytress et al. 2014. Juvenile Anadromous Fish Monitoring Compendium Report (2002-2012).pdf. Available: on SharePoint 

Poytress, W. R., J. J. Gruber, J. P. Van Eenennaam, and M. Gard. 2015. Spatial and Temporal Distribution of Spawning Events and Habitat Characteristics of Sacramento River Green Sturgeon. Transactions of the American Fisheries Society 144(6):1129–1142. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626145.pdf. Available: on SharePoint 

Purdy, C., and S. Kubo. 2021. Wallace Weir and Colusa Basin Drain - Fish Salvage Operations. Available: https://www.calfish.org/ProgramsData/ConservationandManagement/CentralValleyMonitoring/SacramentoValleyTributaryMonitoring/YoloandSutterBypasses-Monitoring/WallaceWeirandColusaBasinDrain.aspx.  Available: on SharePoint 

Pyper, B., J. B. Lando, and C. Justice. 2006. Analysis of Weir Counts and Spawning Surveys of Adult Chinook Salmon in the Stanislaus River. September. Cramer Fish Sciences, Gresham, OR. Available: on SharePoint 

Raleigh, R. F., T. Hickman, R. C. Solomon, and P. C. Nelson. 1984. Habitat Suitability Information: Rainbow Trout. USFWS-BSP, Fort Collins, CO. Available: https://usace.contentdm.oclc.org/digital/collection/p16021coll3/id/240/. Available: on SharePoint 

Ray, R. A., and J. L. Bartholomew. 2013. Estimation of transmission dynamics of the Ceratomyxa shasta actinospore to the salmonid host. Parasitology, 140(7), 907-916. Available: on SharePoint. Copyright protected. See introduction for more information

RBI. 2017. Report on the Effects of the California WaterFix on Harmful Algal Blooms in the Delta. Prepared for California Department of Water Resources. March. Elk Grove, CA: Robertson-Bryan, Inc. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/DWR-653.pdf. Available: on SharePoint 

Rose, B. P., and M. G. Mesa. 2012. Effectiveness of Common Fish Screen Materials to Protect Lamprey Ammocoetes. North American Journal of Fisheries Management 32(3):597-603. Available: https://afspubs.onlinelibrary.wiley.com/doi/abs/10.1080/02755947.2012.678965. Available: on SharePoint 

Rosenfield, J. A., and R. D. Baxter. 2007. Population Dynamics and Distribution Patterns of Longfin Smelt in the San Francisco Estuary. Transactions American Fisheries Society 136: 1577–1592. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/sldmwa/rosenfieldandbaxter2007.pdf. Available: on SharePoint 

Sabal, M. 2014. Interactive Effects of Non-Native Predators and Anthropogenic Habitat Alterations on Native Juvenile Salmon. Master’s Thesis. University of California, Santa Cruz, Santa Cruz, CA. Available: https://escholarship.org/uc/item/06m1z3kz. Available: on SharePoint 

Saiki, M. K., M. R. Jennings, and R. H. Wiedmeyer. 1992. Toxicity of Agricultural Subsurface Drainwater from the San Joaquin Valley, California, to Juvenile Chinook Salmon and Striped Bass. Transactions of American Fisheries Society 121: 73–93. Available: (PDF) Toxicity of Agricultural Subsurface Drainwater from the San Joaquin Valley, California, to Juvenile Chinook Salmon and Striped Bass (researchgate.net). Available: on SharePoint 

Salmonid Scoping Team. 2017. Effects of Water Project Operations on Juvenile Salmonid Migration and Survival in the South Delta. Available: https://www.fisheries.noaa.gov/resource/document/effects-water-project-operations-juvenile-salmonid-migration-and-survival-south. Available: on SharePoint 

Sandahl, J.F., Baldwin, D.H., Jenkins, J.J., Scholz, N.L., 2007. A sensory system at the interface between urban stormwater runoff and salmon survival. Environmental Science and Technology 41, 2998–3004. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626634.pdf. Available: on SharePoint 

San Joaquin Tributaries Authority. 2012. Review of Scientific Information Pertaining to SWRCB’s February 2012 Technical Report on the Scientific Basis for Alternative San Joaquin River Flow Objectives. Prepared for State Water Resources Control Board Phase II Comprehensive Review Workshops, Workshop 2, “Bay-Delta Fisheries” to be held October 1–2, 2012. Prepared by Doug Demko, Michael Hellmair, Matt Peterson, Shaara Ainsley, Michele Palmer, and Andrea Fuller. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/reviewofscientificinformation.pdf. Available: on SharePoint 

Schick, R. S., A. L. Edsall, and S. T. Lindley. 2005. Historical and Current Distribution of Pacific Salmonids in the Central Valley, CA. Technical Memorandum 369. National Marine Fisheries Service, Santa Cruz, CA. Available:  https://people.duke.edu/~rss10/downloads/NOAATM369_resample.pdf. Available: on SharePoint

Schoellhamer, D. H., S. A. Wright, and J. Drexler. 2012. A Conceptual Model of Sedimentation in the Sacramento–San Joaquin Delta. San Francisco Estuary and Watershed Science 10(3). Available: https://www.researchgate.net/publication/285230144_Conceptual_Model_of_Sedimentation_in_the_Sacramento-San_Joaquin_Delta. Available: on SharePoint 

Schreier, B. M., M. R. Baerwald, J. L. Conrad, G. Schumer, and B. May. 2016. Examination of Predation on Early Life Stage Delta Smelt in the San Francisco Estuary Using DNA Diet Analysis. Transactions of the American Fisheries Society 145(4): 723–733. https://gvl.ucdavis.edu/sites/g/files/dgvnsk6021/files/inline-files/Schreier et al 2016 - B diet paper.pdf. Available: on SharePoint 

Seesholtz, A., B. J. Cavallo, J. Kindopp, and R. Kurth. 2004. Juvenile Fishes of the Lower Feather River: Distribution, Emigration Patterns, and Associations with Environmental Variables. In F. Feyrer, L. R. Brown, R. L. Brown, and J. J. Orsi, editors, Early Life History of Fishes in the San Francisco Estuary and Watershed. American Fisheries Society, Symposium 39: 141–166. Available: https://www.researchgate.net/publication/264533656_Juvenile_fishes_of_the_Lower_Feather_River_Distribution_emigration_patterns_and_associations_with_environmental_variables. Available: on SharePoint 

Seesholtz, A. M., M. J. Manuel, and J. P. Van Eenennaam. 2015. First documented spawning and associated habitat conditions for Green Sturgeon in the Feather River, California. Environmental Biology of Fishes 98: 905–912. Available: https://www.researchgate.net/publication/264533648_First_documented_spawning_and_associated_habitat_conditions_for_green_sturgeon_in_the_Feather_River_California. Available: on SharePoint 

Siegel, S., C. Enright, C. Toms, C. Enos, and J. Sutherland. 2010. Suisun Marsh Tidal Marsh and Aquatic Habitats Conceptual Model. Chapter 1: Physical Processes. Suisun Marsh Habitat Management, Restoration and Preservation Plan. Final Review Draft. Prepared by WWR and DWR. Available: on SharePoint 

Singer, G., and J. Frantzich. 2019. Task 8: (Salmon Telemetry) Adult fall-run Chinook Salmon acoustic telemetry to investigate residence time and movement in the Yolo Bypass. Pages 149–174 in Investigating Yolo Bypass as a Fall Food Web Subsidy for the Delta. CDFW Contract Agreement D1683001 00 Report. Completed and Submitted: 12/5/2019. Sacramento, CA: California Department of Water Resources. 

Sisco, J. 2019. Reclaiming the lost population. US Fish and Wildlife Service, Pacific Southwest Region. 18 April. Available: https://www.fws.gov/story/2021-08/reclaiming-lost-population. Available: on SharePoint 

Sites Project Authority and U.S. Bureau of Reclamation. 2017. Sites Reservoir Project Draft Environmental Impact Report/Statement (EIR/EIS). August. Available: https://www.usbr.gov/mp/nepa/nepa_project_details.php?Project_ID=29024  

Smith, D. L., J. M. Nestler, G. E. Johnson, and R. A. Goodwin. 2009. Species-Specific Spatial and Temporal Distribution Patterns of Emigrating Juvenile Salmonids in the Pacific Northwest. Reviews in Fisheries Science 18(1):40–64. Available: on SharePoint. Copyright protected. See introduction for more information

Smith, J. M., C. J. Michel, S. A. Hayes, D. A. Demer, G. R. Cutter Jr., S. C. Manugian, I. S. Iglesias, S. T. Lindley, T. P. Quinn, and D. D. Huff. 2017. The Influence of Environmental Covariates on Chinook Salmon Predation Events by Non-native Fish Predators in the San Joaquin River, CA. Chapter 7 in Testing the Effects of Manipulated Predator Densities and Environmental Variables on Juvenile Salmonid Survival in the lower San Joaquin River. June. Agreement Number 4600010100. Prepared for California Department of Water Resources, Bay-Delta Office. Sacramento, CA. Available: https://www.researchgate.net/publication/321589703_The_influence_of_environmental_covariates_on_Chinook_salmon_predation_events_by_non-native_fish_predators_in_the_San_Joaquin_River_CA_in_Testing_the_effects_of_manipulated_predator_densities_and_envir. 

Sommer, T. R., R. Baxter, and B. Herbold. 1997. Resilience of Splittail in the Sacramento–San Joaquin Estuary. Transactions of the American Fisheries Society 126: 961–976. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/sommer_etal_1997.pdf. Available: on SharePoint 

Sommer, T., B. Harrell, M. Nobriga, R. Brown, P. Moyle, W. Kimmerer, and L. Schemel. 2001. California's Yolo Bypass: Evidence that flood control can be compatible with fisheries, wetlands, wildlife, and agriculture. Fisheries 26(8): 6–-16. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/sldmwa/sommeretal2001b.pdf. Available: on SharePoint 

Sommer, T., L. Conrad, G. O'Leary, F. Feyrer, and W. Harrell. 2002. Spawning and Rearing of Splittail in a Model Floodplain Wetland. Transactions of the American Fisheries Society 131:966–974. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1137 Sommer_et_al_2002_splittail_spawning_floodplain.pdf. Available: on SharePoint 

Sommer, T. R., W. C. Harrell, M. L. Nobriga, and R. Kurth. 2003. Floodplain as Habitat for Native Fish: Lessons from California’s Yolo Bypass. Pages 81–87 in P. M. Faber, editor, California Riparian Systems: Processes and Floodplain Management, Ecology, and Restoration. 2001 Riparian Habitat and Floodplains Conference Proceedings. Riparian Habitat Joint Venture, Sacramento, CA. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626776.pdf

Sommer, T. R., W. C. Harrell, A. Mueller-Solger, B. Tom, and W. Kimmerer. 2004. Effects of Flow Variation on Channel and Floodplain Biota and Habitats of the Sacramento River, California, USA. Aquatic Conservation: Marine and Freshwater Ecosystems 14: 247–261. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/COSJ et al/part2sur_rebuttal/SJC_511.pdf. Available: on SharePoint 

Sommer, T., W. Harrell, and M. Nobriga. 2005. Habitat Use and Stranding Risk of Juvenile Chinook Salmon on a Seasonal Floodplain. North American Journal of Fisheries Management 25: 1493–1504. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/0.7.115.29744-000001.pdf. Available: on SharePoint 

Sommer, T. R., C. Armor, R. Baxter, R. Breuer, L. Brown, M. Chotkowski, S. Culberson, F. Feyrer, M. Gingras, B. Herbold, W. Kimmerer, A. Mueller-Solger, M. Nobriga, and K. Souza. 2007. The Collapse of Pelagic Fishes in the Upper San Francisco Estuary. Fisheries 32: 270–277. Available: https://www.researchgate.net/publication/233182962_The_Collapse_of_Pelagic_Fishes_in_the_Upper_San_Francisco_Estuary_El_Colapso_de_los_Peces_Pelagicos_en_La_Cabecera_Del_Estuario_San_Francisco. Available: on SharePoint 

Sommer, T. R., W. C. Harrell, Z. Matica, and F. Feyrer. 2008. Habitat Associations and Behavior of Adult and Juvenile Splittail (Cyprinidae: Pogonichthys macrolepidotus) in a Managed Seasonal Floodplain Wetland. San Francisco Estuary and Watershed Science 5(2):Article 3. Available: http://www.escholarship.org/uc/item/85r15611. Available: on SharePoint 

Sommer, T., F. H. Mejia, M. L. Nobriga, F. Feyrer, and L. Grimaldo. 2011. The Spawning Migration of Delta Smelt in the Upper San Francisco Estuary. San Francisco Estuary and Watershed Science 9(2). Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626735.pdf. Available: on SharePoint 

Sommer, T.R., W.C. Harrell, and F. Feyrer. 2014. Large-Bodied Fish Migration and Residency in a Flood Basin of the Sacramento River, California, USA. Ecology of Freshwater Fish 2014: 23: 414–423. . Available: on SharePoint. Copyright protected. See introduction for more information

Sommer, T., and F. Mejia. 2013. A Place to Call Home: A Synthesis of Delta Smelt Habitat in the Upper San Francisco Estuary. San Francisco Estuary and Watershed Science 11(2). Available:  https://www.researchgate.net/publication/277621900_A_Place_to_Call_Home_A_Synthesis_of_Delta_Smelt_Habitat_in_the_Upper_San_Francisco_Estuary. Available: on SharePoint 

State Water Resources Control Board. 2018. The 303(d) List of Impaired Water Bodies. California Regional Water Quality Control Board San Francisco Bay Region. Available: https://www.waterboards.ca.gov/water_issues/programs/water_quality_assessment/2018_integrated_report.html. Available: on SharePoint 

Stern, M. A., L. E. Flint, A. L. Flint, N. Knowles, and S. A. Wright. 2020. The Future of Sediment Transport and Streamflow Under a Changing Climate and the Implications for Long-Term Resilience of the San Francisco Bay-Delta. Water Resources Research 56(9):e2019WR026245. Available: https://agupubs.onlinelibrary.wiley.com/doi/pdf/10.1029/2019WR026245. Available: on SharePoint 

Stevens, D. E., D. W. Kohlhorst, L. W. Miller, and D. W. Kelley. 1985. The Decline of Striped Bass in the Sacramento-San Joaquin Estuary, California. Transactions of the American Fisheries Society 114: 12–30. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/cspa/spprt_docs/1987/cspa_exh40.pdf. Available: on SharePoint 

Stevens, D. E., H. K. Chadwick, and R. E. Painter. 1987. American shad and striped bass in California's Sacramento-San Joaquin River system. American Fisheries Society Symposium 1:66-78. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/docs/petitioners_exhibit/dwr/part2/DWR-1094 Stevens et al_1987_American Shad and Striped Bass_AFS Symp.pdf. Available: on SharePoint 

Stompe, D. K., J. D. Roberts, C. A. Estrada, D. M. Keller, N. M. Balfour, and A. I. Benet. 2020. Sacramento River Predator Diet Analysis: A Comparative Study. San Francisco Estuary and Watershed Science 18(1). Available: https://escholarship.org/content/qt3sb5g6w4/qt3sb5g6w4_noSplash_a14a7afb04b6a9fc7824951f21f3d07f.pdf?t=q74ciq. Available: on SharePoint 

Strange, J. S. 2010. Upper Thermal Limits to Migration in Adult Chinook Salmon: Evidence from the Klamath River Basin. Transactions of the American Fisheries Society 139: 1091–1108. Available: https://www.researchgate.net/publication/228637466_Upper_Thermal_Limits_to_Migration_in_Adult_Chinook_Salmon_Evidence_from_the_Klamath_River_Basin. Available: on SharePoint  

Swanson, C., T. Reid, P. S. Young, and J. J. Cech Jr. 2000. Comparative environmental tolerances of threatened delta smelt (Hypomesus transpacificus) and introduced wakasagi (H. nipponensis) in an altered California estuary. Oecologia 123(3):384-390. Available:  https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/swanson_et_al_2000.pdf

Swanson, C., P. S. Young, and J. J. Cech. 2004. Swimming in Two-Vector Flows: Performance and Behavior of Juvenile Chinook Salmon near a Simulated Screened Water Diversion. Transactions of the American Fisheries Society 133(2):265–278. Available: on SharePoint. Copyright protected. See introduction for more information

Suisun Ecological Workgroup. 2001. Suisun Ecological Workgroup Final Report to the State Water Resources Control Board. Available: https://digitalcommons.law.ggu.edu/caldocs_agencies/229/. 

Tehama Colusa Canal Authority. 2012. Fish Passage Improvement Project at the Red Bluff Diversion Dam. Brochure published by TCCA. 4pp. https://www.tccanal.com/RBDD-Bro-Sept2012-NoCrop.pdf. Available: on SharePoint 

Takata, L., T. R. Sommer, J. L. Conrad, and B. M. Schreier. 2017. Rearing and migration of juvenile Chinook salmon (Oncorhynchus tshawytscha) in a large river floodplain. Environmental Biology of Fishes 100(9): 1105–-1120. Available: https://link.springer.com/article/10.1007/s10641-017-0631-0. Available: on SharePoint 

The Bay Institute 1998-- Central Bay and Suisun Bay descriptions Bay Institute. 1998. From the Sierra to the Sea: The Ecological History of the San Francisco Bay-Delta 7 Watershed. San Francisco, CA: The Bay Institute of San Francisco. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/sldmwa/thebayinstitutefromthesierratotheseatheecologica.pdf. Available: on SharePoint 

The Nature Conservancy. 2007a. Sacramento River Ecological Flows Study. Gravel Study Final Report. Available: https://www.researchgate.net/publication/317267533_Sacramento_River_ecological_flows_study_final_report

The Nature Conservancy. 2007b. Linking Biological Responses to River Processes: Implications for Conservation and Management of the Sacramento River—A Focal Species Approach. Final Report. 

Thomas, A. E., J. L. Banks, and D. C. Greenland. 1969. Effect of Yolk Sac Absorption on the Swimming Ability of Fall Chinook Salmon. Transactions of the American Fisheries Society 98(3):406–410. Available: on SharePoint. Copyright protected. See introduction for more information

Thomas, M. J., M. L. Peterson, N. Friedenberg, J. P. Van Eenennaam, J. R. Johnson, J. J. Hoover, and A. P. Klimley. 2013. Stranding of Spawning Run Green Sturgeon in the Sacramento River: Post-Rescue Movements and Potential Population-Level Effects. North American Journal of Fisheries Management 33(2): 287–-297. Available: https://www.researchgate.net/publication/263024427_Stranding_of_Spawning_Run_Green_Sturgeon_in_the_Sacramento_River_Post-Rescue_Movements_and_Potential_Population-Level_Effects. Available: on SharePoint 

Thomson, J. R., W. J. Kimmerer, L. R. Brown, K. B. Newman, R. Mac Nally, W. A. Bennett, F. Feyrer, and E. Fleishman. 2010. Bayesian Change Point Analysis of Abundance Trends for Pelagic Fishes in the Upper San Francisco Estuary. Ecological Applications 20(5): 1431–1448. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt091412/sldmwa/thomson_etal_2010.pdf. Available: on SharePoint 

Tierney, K. B., D. H. Baldwin, T. J. Hara, P. S. Ross, N. L. Scholz, and C. J. Kennedy. 2010. Olfactory Toxicity in Fishes. Aquatic Toxicology 96: 2–26. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/docs/cmnt081712/sldmwa/tierneyetal2009.pdf. Available: on SharePoint 

Toft, J. D., C. A. Simenstad, J. R. Cordell, and L. F. Grimaldo. 2003. The Effects of Introduced Water Hyacinth on Habitat Structure, Invertebrate Assemblages, and Fish Diets. Estuaries 26(3): 746–758. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/deltaflow/docs/exhibits/sfwc/spprt_docs/sfwc_exh3_toft.pdf. Available: on SharePoint 

Tucker, M. E., C. D. Martin, and P. D. Gaines. 2003. Spatial and Temporal Distribution of Sacramento Pikeminnow and Striped Bass at the Red Bluff Diversion Complex, including the Research Pumping Plant, Sacramento River, California: January, 1997 to August, 1998. Red Bluff Research Pumping Plant Report Series. U.S. Fish and Wildlife Service, Red Bluff, CA. Available: https://calisphere.org/item/ark:/86086/n2fb5205/

Tucker, M. E., C. M. Williams, and R. R. Johnson. 1998. Abundance, Food Habits, and Life History of Sacramento Squawfish and Striped Bass at the Red Bluff Diversion Complex, including the Research Pumping Plant, Sacramento River, California: 1994-1996. Red Bluff Fish Passage Research Program. U.S. Fish and Wildlife Service, Red Bluff, CA. Available: https://www.usbr.gov/mp/TFFIP/docs/red-bluff/red-bluff-vol-4-abundance-food-habits.pdf

Twardochleb L., A. Maguire, L. Dixit, M. Bedwell, J. Orlando, M. MacWilliams, A. Bever, and B. Davis. 2021. North Delta Food Subsidies Study: Monitoring Food Web Responses to the North Delta Flow Action, 2019 Report. California Department of Water Resources, Division of Environmental Services. Available: on SharePoint 

U.S. Army Corps of Engineers, U.S. Bureau of Reclamation, Sacramento Area Flood Control Agency, and California Central Valley Flood Protection Board. 2012. Folsom Dam Modification Project Approach Channel, Draft Supplemental Environmental Impact Statement/ Environmental Impact Report. July. Available: https://www.spk.usace.army.mil/Portals/12/documents/civil_works/JFP/FolsomDamMods_ApproachChannel_FSEIS-EIR.pdf. Available: on SharePoint 

U.S. Bureau of Reclamation. 2003. Ecosystem Restoration Opportunities in the Upper Sacramento River Region. 

U.S. Bureau of Reclamation. 2005. Lake Natoma Temperature Curtain and Channel Modification Study, 2001–2002. Hydraulic Laboratory Report HL-2005-02. Available: https://www.usbr.gov/tsc/techreferences/hydraulics_lab/pubs/HL/HL-2005-02.pdf. Available: on SharePoint 

U.S. Bureau of Reclamation. 2007. Folsom General Plan/Resource Management Plan: Folsom Lake Recreation Area and Folsom Powerhouse State Historic Park. Available: https://ohp.parks.ca.gov/pages/21299/files/folsom gp-rmp--vol. 1--part i--cover and table of contents.pdf. Available: on SharePoint 

U.S. Bureau of Reclamation. 2008. Biological Assessment on the Continued Long-Term Operations of the Central Valley Project and the State Water Project. Bureau of Reclamation Mid-Pacific Region, Sacramento CA. August. Available: https://www.noaa.gov/sites/default/files/legacy/document/2020/Oct/07354626170.pdf. Available: on SharePoint 

U.S. Bureau of Reclamation. 2010. CVPIA Sacramento River Spawning Gravel Addition Project at Keswick Dam, Categorical Exclusion Checklist. October 5. Available: https://www.usbr.gov/mp/nepa/includes/documentShow.php?Doc_ID=8087. Available: on SharePoint 

U.S. Bureau of Reclamation. 2013. Shasta Lake Water Resources Investigation, California. Draft Environmental Impact Statement. June. Available: on SharePoint 

U.S. Bureau of Reclamation. 2014. Battle Creek Salmon and Steelhead Restoration Project. Available: https://www.usbr.gov/mp/battlecreek/.  Available: on SharePoint

U.S. Bureau of Reclamation. 2019. Reinitiation of Consultation on the Coordinated Long-Term Operation of the Central Valley Project and State Water Project. Final Biological Assessment. January. Mid-Pacific Region, U.S. Bureau of Reclamation. Available: on SharePoint

U.S. Bureau of Reclamation. 2020. Annual Report on the Long-Term Operation of the Central Valley Project and State Water Project for Water Year 2020. Central Valley Project, California-Great Basin Region. December. Available: on SharePoint

U.S. Bureau of Reclamation and California Department of Fish and Game. 2011. Final Environmental Impact Statement/Environmental Impact Report for the Nimbus Hatchery Fish Passage Project. Available: usbr.gov/mp/nepa/includes/documentShow.php?Doc_ID=8063 Available: on SharePoint

U.S. Bureau of Reclamation, California Department of Water Resources, U.S. Fish and Wildlife Service, National Marine Fisheries Service, and California Department of Fish and Game. 2003. Environmental Water Account Draft Environmental Impact Statement/Environmental Impact Report. Available: on SharePoint

U.S. Bureau of Reclamation, U.S. Fish and Wildlife Service, National Marine Fisheries Service, California Department of Fish and Game, and Water Forum. 2006. Lower American River Flow Management Standard. Draft Report. Available: on SharePoint

U.S. Environmental Protection Agency. 2010. The SPCC Rule and Recent Amendments Presentation. November. Available: https://www.epa.gov/oil-spills-prevention-and-preparedness-regulations/spill-prevention-control-and-countermeasure-16.  Available: on SharePoint

U.S. Fish and Wildlife Service. 1993. Mitigation Policy: 501 FW 2. Series Interagencies Activities. February. 

U.S. Fish and Wildlife Service. 2003a. Flow-Habitat Relationships for steelhead and fall, late-fall, and winter-run Chinook salmon spawning in the Sacramento River between Keswick Dam and Battle Creek. February 4, 2003. Sacramento, CA. 

U.S. Fish and Wildlife Service. 2003b. Comparison of PHABSIM and 2-D Modeling of Habitat for Steelhead and Fall-run Chinook Salmon Spawning in the Lower American River. February 4, 2003. Sacramento, CA. 

U.S. Fish and Wildlife Service. 2005a. Flow-Habitat Relationships for Chinook Salmon Rearing in the Sacramento River between Keswick Dam and Battle Creek. Prepared by Staff of Energy Planning and Instream Flow Branch. Sacramento, CA. Available: on SharePoint

U.S. Fish and Wildlife Service. 2005b. Flow Habitat Relationships for Fall-run Chinook Salmon Spawning in the Sacramento River between Battle Creek and Deer Creek. Prepared by Staff of Energy Planning and Instream Flow Branch. Sacramento, CA. Available: on SharePoint 

U.S. Fish and Wildlife Service. 2006. Relationships between Flow Fluctuations and Redd Dewatering and Juvenile Stranding for Chinook Salmon and steelhead in the Sacramento River between Keswick Dam and Battle Creek. Prepared by Staff of Energy Planning and Instream Flow Branch. Sacramento, CA. Available: on SharePoint

U.S. Fish and Wildlife Service. 2008. Biological Opinion on the Coordinated Operations of the Central Valley Project and State Water Project in California. 

U.S. Fish and Wildlife Service. 2011a. Flow-Habitat Relationships for Fall-Run Chinook Salmon and Steelhead/Rainbow Trout Spawning in Clear Creek between Clear Creek Road and the Sacramento River. U.S. Fish and Wildlife Service. 2011b. Biological Assessment of Artificial Propagation at Coleman National Fish Hatchery and Livingston Stone National Fish Hatchery: Program Description and Incidental Take of Chinook Salmon and Steelhead. July. Copyright protected. See introduction for more information

U.S. Fish and Wildlife Service. 2012. California Hatchery Review Project, Appendix VIII. Coleman National Fish Hatchery Steelhead Program Report. Available: on SharePoint

2016. S. Fish and Wildlife Service. 2016. Central Valley Improvement Act Fisheries Investigations. Annual Progress Report. Prepared by Staff of Anadromous Fish Restoration Program. Lodi, CA. 

U.S. Fish and Wildlife Service. 2019. Biological Opinion for the Reinitiation of Consultation on the Long Term Operation of the Central Valley Project and State Water Project. USFWS Pacific Southwest Region. Sacramento, CA. 

U.S. Fish and Wildlife Service and National Marine Fisheries Service. 2019. Biological Opinions for the Reinitiation of Consultation on the Long Term Coordinated Operations of the Central Valley Project and State Water Project. Summary. 21 October 21. Available: https://www.fws.gov/sfbaydelta/cvp-swp/documents/ROC_on_LTO_Summary_FINAL.pdf.  

Van Nieuwenhuyse, E. E. 2007. Response of Summer Chlorophyll Concentration to Reduced Total Phosphorus Concentration in the Rhine River (Netherlands) and the Sacramento–San Joaquin Delta (California, USA). Canadian Journal of Fisheries and Aquatic Sciences 64: 1529–1542. Copyright protected. See introduction for more information 

Verhille, C. E., J. B. Poletto, D. E. Cocherell, B. DeCourten, S. Baird, J. J. Cech, and N. A. Fangue. 2014. Larval Green and White Sturgeon Swimming Performance in Relation to Water-Diversion Flows. Conservation Physiology 2(1):cou031. Available: https://core.ac.uk/download/pdf/188134284.pdf  Available: on SharePoint

Vogel, D. A., and K. R. Marine. 1991. Guide to Upper Sacramento River Chinook Salmon Life History. CH2M HILL, Redding, CA. 

Vogel, D. A., and K. R. Marine. 1995. 1995 Evaluation of Juvenile Chinook Salmon Transport Timing in the Vicinity of the New Fish Screens at the Glenn-Colusa Irrigation District’s Sacramento River Pump Station. November. Natural Resource Scientists, Inc., Red Bluff, CA. 

Vogel, D.A. 2007. 2006 Biological evaluation of the fish screens at the Glenn-Colusa Irrigation District’s Sacramento River pump station. Report prepared for the multi-agency Technical Oversight Committee. Natural Resource Scientists, Inc. June 2007. 24 p 

Vogel, D. A. 2008. Biological Evaluations of the Fish Screens at the Glenn–Colusa Irrigation District’s Sacramento River Pump Station: 2002–2007. Natural Resource Scientists, Inc., Red Bluff, CA. Available: on SharePoint

Vogel, D. A. 2011. Insights into the Problems, Progress, and Potential Solutions for Sacramento River Basin Native Anadromous Fish Restoration. Prepared for Northern California Water Association and Sacramento Valley Water Users. Available: on SharePoint

Vogel, D. 2013. Evaluation of Fish Entrainment in 12 Unscreened Sacramento River Diversions. Final Report. Prepared for CVPIA Anadromous Fish Screen Program (U.S. Fish and Wildlife Service and U.S. Bureau of Reclamation) and Ecosystem Restoration Program (California Department of Fish and Wildlife, U.S. Fish and Wildlife Service, and NOAA Fisheries). Available: on SharePoint

Wagner, R. W., M. Stacey, L. R. Brown, and M. Dettinger. 2011. Statistical Models of Temperature in the Sacramento–San Joaquin Delta under Climate-Change Scenarios and Ecological Implications. Estuaries and Coasts 34: 544–556. DOI 10.1007/s12237-010-9369-z. Available: on SharePoint 

Walters, A. W., D. M. Holzer, J. R. Faulkner, C. D. Warren, P. D. Murphy, and M. M. McClure. 2012. Quantifying Cumulative Entrainment Effects for Chinook Salmon in a Heavily Irrigated Watershed. Transactions of the American Fisheries Society 141(5):1180–1190. Copyright protected. See introduction for more information

Wang, J. C. S. 2006. Early Life History Comparison of the Green Sturgeon, Acipenser medirostris, and White Sturgeon, Acipenser transmontanus, of the Sacramento-San Joaquin River Delta, California. Tracy Technical Bulletin 2006-1. U.S. Department of the Interior, Bureau of Reclamation, Mid-Pacific Region, Denver, CO. https://usbr.gov/mp/TFFIP/docs/ttb-2006-1-early-life-history-comparison.pdf  Available: on SharePoint 

Water Forum. 2005. Addendum to the Report Titled “Impacts on Lower American River Salmonids and Recommendations Associated with Folsom Reservoir Operations to Meet Delta Water Quality Objectives and Demands.” Prepared for City-County Office of Metropolitan Water Planning, Sacramento, CA. Prepared by Surface Water Resources, Inc., Sacramento, CA. September. Available: on SharePoint

Waters, T. 1995. Sediment in Streams: Sources, Biological Effects, and Control. Copyright protected. See introduction for more information

Weston, D. P., J. You, and M. J. Lydy. 2004. Distribution and Toxicity of Sediment-Associated Pesticides in Agriculture-Dominated Water Bodies of California’s Central Valley. Environmental Science and Technology 38: 2752–2759. Copyright protected. See introduction for more information 

Weston, D. P., A. M. Asbell, S. A. Lesmeister, S. J. Teh, and M. J. Lydy. 2014. Urban and Agricultural Pesticide Inputs to a Critical Habitat for the Threatened Delta Smelt (Hypomesus transpacificus). Environmental Toxicology and Chemistry 33:920–929. Copyright protected. See introduction for more information

Weston, D. P., C. Moschet, T. M. Young, N. Johanif, H. C. Poynton, K. M. Major, R. E. Connon, and S. Hasenbein. 2019. Chemical and Toxicological Effects on Cache Slough after Storm-Driven Contaminant Inputs. San Francisco Estuary and Watershed Science 17(3). Available: on SharePoint

Whipple, A. A., R. M. Grossinger, D. Rankin, B. Stanford, and R. A. Askevold. 2012. Sacramento–San Joaquin Delta Historical Ecology Investigation: Exploring Pattern and Process. Prepared for the California Department of Fish and Game and Ecosystem Restoration Program. Historical Ecology Program Publication 672, San Francisco Estuary Institute-Aquatic Science Center, Richmond, California. Copyright protected. See introduction for more information

Wilkerson, F. P., R. C. Dugdale, V. E. Hogue, and A. Marchi. 2006. Phytoplankton Blooms and Nitrogen Productivity in San Francisco Bay. Estuaries and Coasts 29: 401–416. Copyright protected. See introduction for more information

Williams, J. G. 2006. Central Valley Salmon: A Perspective on Chinook and Steelhead in the Central Valley of California. San Francisco Estuary and Watershed Science 4. Available: on SharePoint

Windell, S., P. L. Brandes, J. L. Conrad, J. W. Ferguson, P. A. L. Goertler, B. N. Harvey, J. Heublein, J. A. Israel, D. W. Kratville, J. E. Kirsch, R. W. Perry, J. Pisciotto, W. R. Poytress, K. Reece, B. G. Swart, and R. C. Johnson. 2017. Scientific Framework for Assessing Factors Influencing Endangered Sacramento River Winter-Run Chinook Salmon (Oncorhynchus tshawytscha) across the Life Cycle. NOAA Technical Memorandum NMFS-SWFSC-586. NOAA National Marine Fisheries Service, Southwest Fisheries Science Center Fisheries Ecology Division Santa Cruz, CA. Available: on SharePoint

Wood, M. L., P. W. Morris, J. Cooke, and S. J Louie. 2010. Amendments to the Water Quality Control Plan for the Sacramento River and San Joaquin River Basins for the Control of Methylmercury and Total Mercury in the Sacramento-San Joaquin Delta Estuary. Staff Report. California Central Valley Regional Water Quality Control Board, Rancho Cordova, California. 

Wright, S. A., and D. H. Schoellhamer. 2004. Trends in the Sediment Yield of the Sacramento River, California, 1957–2001. San Francisco Estuary and Watershed Science 2(2). Available: on SharePoint

Wright, S. A., and D. H. Schoellhamer. 2005. Estimating sediment budgets at the interface between rivers and estuaries with application to the Sacramento-San Joaquin River Delta. Water Resources Research 41(9):W09428. Available: on SharePoint

Wyman, M.T., M.J. Thomas, R.R. McDonald, A.R. Hearn, R.D. Battleson, E.D. Chapman, P. Kinzel, J.T. Minear, E.A. Mora, J.M. Nelson, M.D. Pagel, and A.P. Klimley. 2018. Fine-scale habitat selection of green sturgeon (Acipenser medirostris) within three spawning location in the Sacramento River, California. Canadian Journal of Fisheries and Aquatic Sciences 75:779-791. Copyright protected. See introduction for more information

Yates, E. B. 1989. Water Quality and Supply on Cortina Rancheria, Colusa County, California. Water-Resources Investigations Report 89-4004. U.S. Geological Survey. Sacramento, CA. Available: on SharePoint

Yoshiyama, R. M., E. R. Gerstung, F. W. Fisher, and P. B. Moyle. 1996. Historical and Present Distribution of Chinook Salmon in the Central Valley Drainage of California in Sierra Nevada Ecosystem Project. Final Report to Congress. Volume III: Assessments, Commissioned Reports, and Background Information. University of California, Davis, Centers for Water and Wildland Resources. Available: on SharePoint

Yoshiyama, R. M., E. R. Gerstung, F. W. Fisher, and P. B. Moyle. 2001. Historical and Present Distribution of Chinook Salmon in the Central Valley Drainage of California. Contributions to the Biology of Central Valley Salmonids. California Department of Fish and Game Fish Bulletin 179(1): 71–176. Available: on SharePoint

Zajanc, D., S. H. Kramer, N. Nur, and P. A. Nelson. 2013. Holding Behavior of Chinook Salmon (Oncorhynchus tshawytscha) and Steelhead (O. mykiss) Smolts, as Influenced by Habitat Features of Levee Banks, in the Highly Modified Lower Sacramento River, California. Environmental Biology of Fishes 96(2-3):245–256 Copyright protected. See introduction for more information

Zeug, S. C. and B. J. Cavallo. 2012. Influence of Estuary Conditions on the Recovery Rate of Coded-Wire-Tagged Chinook Salmon (Oncorhynchus tshawytscha) in an Ocean Fishery. Ecology of Freshwater Fish 22(1): 157–168. Copyright protected. See introduction for more information

Zydlewski, G. B., and J. R. Johnson. 2002. Response of Bull Trout Fry to Four Types of Water Diversion Screens. North American Journal of Fisheries Management 22(4):1276–1282. Copyright protected. See introduction for more information

Personal Communications

Kapla, James. Principal Project Manager, Jacobs, Bellevue, WA. May 21, 2019—Email describing potential Delevan discharge velocity and infrastructure requirements provided to Marin Greenwood, Aquatic Ecologist, ICF, Sacramento, CA. 

Kline, Phil. IT Support. Glenn-Colusa Irrigation District, Willows, CA. March 14, 2019—Glenn-Colusa Irrigation District data provided to John Spranza, Senior Ecologist/Regulatory Specialist, HDR, Sacramento, CA, via Google documents link. 

Michel, Cyril. Assistant Project Scientist. University of California, Santa Cruz; affiliated with Southwest Fisheries Science Center – Fisheries Ecology Division, National Marine Fisheries Service, Santa Cruz, CA. October 26, 2020—Comment during Sites Joint Aquatic Workshop #1. 

Perry, Russell. Research Fisheries Biologist, Quantitative Fisheries Ecology Section, USGS Western Fisheries Research Center, Columbia River Research Laboratory, Cook, WA. June 18, 2019—Email containing Excel file <North Delta Routing Management Tool v2.1.xlsx> sent to Marin Greenwood, Aquatic Ecologist, ICF, Sacramento, CA. 

Seesholtz, Alicia. Staff Environmental Scientist. California Department of Water Resources, Sacramento, CA. February 2021—Phone conversations with Rick Wilder, Senior Environmental Scientist, ICF, Sacramento, CA.

AECOM. 2020a. Geology and Seismicity Technical Memorandum. Sites Program Management Team. August 18. Available: on SharePoint            

AECOM. 2020b. Main Dams and Saddle Dams Technical Memorandum. Task Order No. 1, Task HR2.92. Sites Program Management Team. August 19, 2020. Available: on SharePoint            

Argus, D. and R. Gordon. 2001. Present Tectonic Motion across the Coast Ranges and San Andreas Fault System in Central California. Geological Society of America Bulletin. December. Volume 113: p. 1580–1592. Copyright protected. See introduction for more information 

California Department of Transportation. 2020. Seismic Design Criteria. Version 2.0. Available: https://dot.ca.gov/-/media/dot-media/programs/engineering/documents/seismicdesigncriteria-sdc/202007-seismicdesigncriteria-v2-a11y.pdf  Available: on SharePoint              

California Department of Water Resources. 2003. Geologic Feasibility Report, Sites Reservoir Project, Project Geology Report No. 94-30-02. Division of Engineering. July. Sacramento, CA. Available: https://sitesproject.org/wp-content/uploads/2018/09/Geologic-Feasibility-Report-Sites-Reservoir-Project.pdf  Available: on SharePoint              

California Geological Survey. 2002. California geomorphic provinces. Note 36. Sacramento, CA. Available: on SharePoint              

California Geological Survey. 2004. Special Publication 118, Recommended Criteria for Delineating Seismic Hazard Zones in California. Available: http://www.conservation.ca.gov/cgs/shzp/webdocs/Documents/SP118_Revised.pdf. Last revised: April 2004. Available: on SharePoint              

California Geological Survey. 2008a. Probabilistic Seismic Hazards Ground Motion Interpolator. Available: https://www.conservation.ca.gov/cgs/Pages/PSHA/ground-motion-interpolator.aspx. Available: on SharePoint                

California Geological Survey. 2008b. Guidelines for Evaluating and Mitigating Seismic Hazards in California. (Special Publication 117A.) Available: http://www.conservation.ca.gov/cgs/shzp/webdocs/Documents/sp117.pdf. Available: on SharePoint                 

California Geological Survey. 2010. 2010 Fault Activity Map of California. California Geological Survey, Geologic Data Map No. 6. Compilation and Interpretation by Charles W. Jennings and William A. Bryant. Graphics by Milind Patel, Ellen Sander, Jim Thompson, Barbara Wanish, and Milton Fonseca. Available: https://maps.conservation.ca.gov/cgs/fam/app/. Available: on SharePoint               

California Geological Survey. 2016. Earthquake shaking potential for California. Map Sheet 48. Sacramento, CA. Available: https://www.conservation.ca.gov/cgs/Documents/Publications/Map-Sheets/MS_048.pdf. Available: on SharePoint              

California Geological Survey. 2020. CGS Information Warehouse: Landslides. Available: < https://maps.conservation.ca.gov/cgs/informationwarehouse/>. Available: on SharePoint             

Helley, E. J., and D. S. Harwood. 1985. Geologic map of the late Cenozoic Deposits of the Sacramento Valley and northern Sierran Foothills, California: U.S. Geological Survey Miscellaneous Field Studies Map MF-1790, scale 1:62,500, 5 sheets. Last revised: October 22, 2007. Available: https://pubs.usgs.gov/mf/1985/1790/. Available: on SharePoint              

Natural Resources Conservation Service. 2006. Soil Survey of Colusa County, California. U.S. Department of Agriculture, in cooperation with Colusa County Resource Conservation District; State of California, Department of Conservation; Regents of the University of California; United States Department of Agriculture, Forest Service; and United States Department of the Interior, Bureau of Land Management and Fish and Wildlife Service. Available: https://ia601605.us.archive.org/10/items/usda-colusaCA2006/colusaCA2006.pdf  Available: on SharePoint            

Natural Resources Conservation Service. 2020. Soil Survey Geographic (SSURGO) Database for Colusa and Glenn Counties, California [Online]. U.S. Department of Agriculture. Available: https://websoilsurvey.sc.egov.usda.gov/App/WebSoilSurvey.aspx. Available: on SharePoint            

National Oceanic and Atmospheric Administration. 2018. What is a seiche? Last revised: June 25, 2018. Available: http://oceanservice.noaa.gov/facts/seiche.html.  Available: on SharePoint           

Norris, R. M., and R. W. Webb. 1990. Geology of California (2nd edition). New York, NY: John Wiley & Sons. Copyright protected. See introduction for more information 

Soil Survey Staff. 2020. Web Soil Survey. Natural Resources Conservation Service, United States Department of Agriculture. Available: https://websoilsurvey.sc.egov.usda.gov/App/HomePage.htm.  Available: on SharePoint           

Society of Vertebrate Paleontology. 2010. Standard Procedures for the Assessment and Mitigation of Adverse Impacts to Paleontological Resources. Last revised: unknown. Available: https://vertpaleo.org/wp-content/uploads/2021/01/SVP_Impact_Mitigation_Guidelines-1.pdf#:~:text=Procedures%20are%20presented%20for%20evaluating%20the%20potential%20for,and%20inventory%2C%20and%20final%20reports%20and%20specimen%20curation. Available: on SharePoint           

William Lettis & Associates. 2002. Seismotectonic Evaluation, Phase II Fault and Seismic Hazards Evaluation. North of Delta Offstream Storage, DWR – Integrated Storage Investigations. Prepared for DWR, Sacramento, CA. October. Walnut Creek, CA. 

University of California Museum of Paleontology. 2020. UCMP Specimen and Advanced Searches. Available: http://ucmpdb.berkeley.edu/. Available: on SharePoint            

U.S. Bureau of Reclamation. 2015. Design Standards No. 13 Embankment Dams, Chapter 13: Seismic Analysis and Design, Phase 4: Final. Technical Service Center. May. Available: https://usbr.gov/tsc/techreferences/designstandards-datacollectionguides/finalds-pdfs/DS13-13.pdf  Available: on SharePoint           

U.S. Department of Agriculture, 2019. Natural Resources Conservation Service. National Soil Survey Handbook, title 430-VI. Parts 618 and 622. Available: https://directives.sc.egov.usda.gov/OpenNonWebContent.aspx?content=48824.wba.   November. Available: on SharePoint          

U.S. Geological Survey. 2020. Seismic Seiches. Last revised: unknown. Available: https://www.usgs.gov/natural-hazards/earthquake-hazards/science/seismic-seiches?qt-science_center_objects=0#qt-science_center_objects. Available: on SharePoint           

U.S. Geological Survey. 1970. Mercury in the Environment. Paper 713. U.S. Government Printing Office, Washington DC. Available: https://pubs.usgs.gov/pp/0713/report.pdf. Available: on SharePoint         

Personal Communications

Forrest, Michael. Project Manager. AECOM, Sites Reservoir Authority Engineering Team. October 28, 2020— email to Nicole Williams, Project Manager, ICF, Sacramento, CA

AECOM. 2021. Operations and Maintenance for HR Facilities – Draft [memorandum]. February 26. Prepared by Michael Forrest, P.E., G.E.; Mike Smith, P.E., G.E; Idit Zarchi, P.E.; Howard Michael, P.E.; Syed Kazmi, P.E.; Peter Morris. Prepared for Sites Project Authority. 

California Geological Survey. 2021. CGS Information Warehouse: Mineral Land Classification. Available: https://maps.conservation.ca.gov/cgs/informationwarehouse/mlc/. Available: on SharePoint        

Clinkenbeard, J.P., and F.W. Gius. 2018. Aggregate Sustainability in California. California Geological Survey Map Sheet 52. Report and Map. Sacramento, CA. Available: https://www.conservation.ca.gov/cgs/minerals/mineral-land-classification-smara.  

Colusa County. 2012. Colusa County General Plan. Adopted July 31, 2012. Prepared by De Novo Planning Group for County of Colusa. Available: https://www.countyofcolusa.org/137/General-Plan. Available: on SharePoint       

County of Glenn. 1993. Policy Plan, Glenn County General Plan, Volume 1. Glenn County, California. Prepared by Quad Consultants in association with Brown-Buntin Associates, Inc. Adopted June 15, 1993. Available: https://www.countyofglenn.net/sites/default/files/images/1%20Policy%20Plan%20Glenn%20County%20General%20Plan%20Vol.%20I%20Reduced%20Size.pdf  Available: on SharePoint                        

County of Glenn. 2020. Glenn County General Plan Update: Existing Conditions Report 2020. Prepared by De Novo Planning Group for County of Glenn. Available: https://glenncounty.generalplan.org/s/GlennCounty-ECR-Final-Feb2020.pdf. Available: on SharePoint                           

County of Yolo. 2009. 2030 Countywide General Plan. Land Use and Community Character Element. Adopted November 2009. Available: https://www.yolocounty.org/home/showpublisheddocument/68781/637516723220130000  Available: on SharePoint                        

Executive Office of the President. 2017. A federal strategy to ensure secure and reliable supplies of critical minerals. Federal Register, v. 82, No. 246, p. 60835-60837. Available: https://federalregister.gov/documents/2017/12/26/2017-27899/a-federal-strategy-to-ensure-secure-and-reliable-supplies-of-critical-minerals.  Available: on SharePoint                         

Executive Office of the President. 2020. Addressing the Threat to Domestic Supply Chain from Reliance on Critical Minerals from Foreign Adversaries and Supporting the Domestic Mining and Processing Industries. Federal Register, v. 85, No. 193, p. 62539-62544. Available: https://www.federalregister.gov/documents/2020/10/05/2020-22064/addressing-the-threat-to-the-domestic-supply-chain-from-reliance-on-critical-minerals-from-foreign. Available: on SharePoint                          

Geologic Energy Management Division. 2021. Well Finder. Available: https://maps.conservation.ca.gov/doggr/wellfinder/#openModal/-121.83103/38.87058/12.  

ICF. 2020. Technical Memorandum to File: Sites Reservoir Minerals Information. Sacramento, CA. Prepared by ICF. 

O’Neal, M.D., and F.W. Gius. 2018. Mineral land classification: concrete aggregate in the greater Sacramento area production-consumption region. California Geological Survey Special Report 245, Sacramento, CA. 55p. Available: https://www.conservation.ca.gov/cgs/minerals/mineral-land-classification-smara.  

Schenk, C.J., T.J. Mercier, M.E. Tennyson, C.A. Woodall, K.R. Marra, H.M. Leathers-Miller, and P.A. Le. 2020. Assessment of undiscovered gas resources of the Sacramento Basin Province in California, 2019: U.S. Geological Survey Fact Sheet 2020–3036, 4 p. Available: https://doi.org/10.3133/fs20203036. First posted September 10, 2020. Available: on SharePoint                         

Secretary of the Interior. 2017 Secretarial Order No. 3359. Critical Mineral Independence and Security. Available: https://www.doi.gov/sites/doi.gov/files/uploads/so_criticalminerals.pdf. Available: on SharePoint                         

Secretary of the Interior. 2018. Final list of critical minerals 2018. Federal Register 83, no 97:23295-23296. Available: https://www.govinfo.gov/content/pkg/FR-2018-05-18/pdf/2018-10667.pdf.  Available: on SharePoint                         

Shumway, D.O. 1997. Mineral land classification of concrete-grade aggregate resources in Glenn County, California. California Division of Mines and Geology Open-file Report 97-02, Sacramento, CA. 52p. Copyright protected. See introduction for more information

Sterling, R. 2018. What is next for the “mature” Sacramento Basin? The West Side Story, A brief look into the Lower Cretaceous and Upper Jurassic Rock. American Association Petroleum Geologists, Search and Discovery Article No. 11091, 51p. Available: http://www.searchanddiscovery.com/pdfz/documents/2018/11091sterling/ndx_sterling.pdf.html?q=%252BauthorStrip%253Asterling+-isMeetingAbstract%253Amtgabsyes. Available: on SharePoint                          

Tehama County. 2009. Tehama County General Plan Update 2009 – 2029. Prepared by PMC, Chico, CA. Available: https://co.tehama.ca.us/images/stories/planning/2009-2029%20Tehama%20County%20General%20Plan%20r1.pdf.  Available: on SharePoint          

AECOM. 2020. Roads and Bridge Technical Memorandum. August. 

California Department of Finance. 2020. Forecasting. Demographics. Estimates. E-5 Population and Housing Estimates for Cities, Counties, and the State, 2010-2020, with 2010 Census Benchmark. Last revised: May 2020.  

Colusa County. 2012. Colusa County General Plan. Adopted July 31, 2012. Prepared by De Novo Planning Group for County of Colusa. Available: https://www.countyofcolusa.org/137/General-Plan.  Available: on SharePoint                         

Colusa County. 2014. Chapter 44, Zoning Code. Available: https://www.codepublishing.com/CA/ColusaCounty/#!/ColusaCounty44.html. Available: on SharePoint                         

County of Glenn. 1993. Policy Plan, Glenn County General Plan, Volume 1. Glenn County, California. Prepared by Quad Consultants in association with Brown-Buntin Associates, Inc. Adopted June 15, 1993. Available: https://www.countyofglenn.net/sites/default/files/images/1%20Policy%20Plan%20Glenn%20County%20General%20Plan%20Vol.%20I%20Reduced%20Size.pdf  Available: on SharePoint                        

County of Glenn. 2020a. Glenn County General Plan Update: Existing Conditions Report 2020. Prepared by De Novo Planning Group for County of Glenn. Available: https://glenncounty.generalplan.org/s/GlennCounty-ECR-Final-Feb2020.pdf. Available: on SharePoint                          

County of Glenn. 2020b. County Code Directory. Available: https://www.countyofglenn.net/govt/county-code/title-15.  Available: on SharePoint                        

County of Glenn Planning Division. 2020. GIS Data for Glenn County, California. Purchased on November 4, 2020. Copyright protected. See introduction for more information

County of Yolo. 2009. 2030 Countywide General Plan. Land Use and Community Character Element. Adopted November 2009. Available: https://www.yolocounty.org/home/showpublisheddocument/68781/637516723220130000 Available: on SharePoint                        

County of Yolo. 2014. Yolo County Community Services Department, Zoning Code (Title 8 of the Yolo County Code). Adopted July 2014. Available: https://www.yolocounty.org/home/showpublisheddocument?id=65510. Available: on SharePoint                        

Federal Register. 2018. Census Designated Places (CDPs) for the 2020 Census – Final Criteria. Available: https://www.federalregister.gov/documents/2018/11/13/2018-24571/census-designated-places-cdps-for-the-2020-census-final-criteria. Available: on SharePoint                         

United States Census Bureau. 2012. California: 2010 Population and Housing Unit Counts, 2010 Census of Population and Housing. Available: on SharePoint                      

United States Census Bureau. 2019. Lodoga CDP, California. Available: https://data.census.gov/cedsci/profile?g=1600000US0642230. Available: on SharePoint      

California Department of Conservation. 2016a. Colusa County 1984–2016 Land Use Summary. Farmland Mapping and Monitoring Program. 

California Department of Conservation. 2016b. Yolo County 1984–2016 Land Use Summary. Farmland Mapping and Monitoring Program. 

California Department of Conservation. 2016c. Important Farmland: Colusa County and Yolo County. Available: https://gis.data.ca.gov/datasets/cadoc::california-important-farmland-most-recent. 

California Department of Conservation. 2018a. Glenn County 1984–2018 Land Use Summary. Farmland Mapping and Monitoring Program. 

California Department of Conservation. 2018b. Important Farmland: Glenn County. Available: https://gis.data.ca.gov/datasets/cadoc::california-important-farmland-most-recent.    

California Department of Conservation. 2019. Farmland Security Zones. Available: https://www.conservation.ca.gov/dlrp/wa/Pages/Farmland-Security-Zones.aspx.   

California Department of Conservation. 2021. California Important Farmland Finder. Available: https://maps.conservation.ca.gov/DLRP/CIFF/. 

California Department of Food and Agriculture. n.d. California Agricultural Vision. Agricultural Land Loss & Conservation. Available: https://www.cdfa.ca.gov/agvision/docs/Agricultural_Loss_and_Conservation.pdf.  Available: on SharePoint                     

California Department of Water Resources. 2013. Fine-Scale Riparian Vegetation Mapping of the Central Valley Flood Protection Plan Area. October 25, 2013. Final Report. Prepared by the California Department of Fish and Wildlife Vegetation Classification and Mapping Program and Geographical Information Center, California State University, Chico. Available: https://nrm.dfg.ca.gov/FileHandler.ashx?DocumentID=74420&inline. Available: on SharePoint                        

California Rice Commission. 2021. How Rice Grows. Available: https://calrice.org/industry/how-rice-grows/.  Available: on SharePoint                     

Colusa County. 2019. Colusa County Crop Report 2019. Department of Agriculture. Available: https://www.countyofcolusa.org/DocumentCenter/View/12901/2019-Crop-Report?bidId=. Available: on SharePoint                     

Colusa County. 2020a. County Data for Agricultural Zoning and Parcel Boundaries. Department of Public Works. Available: https://www.countyofcolusa.org/713/GIS-Download-Library. Available: on SharePoint                       

Colusa County. 2020b. County Data for Williamson Act and FSZ Contracts. County Assessor’s Office. 

Ecology Center. 2015. Barriers to Entry: Challenges and Resources for Beginning Farmers. Available: https://ecologycenter.org/blog/barriers-to-entry-challenges-and-resources-for-beginning-farmers/. Available: on SharePoint                    

Glenn County. 2016a. 2016 Annual Crop & Livestock Report. Glenn County Agricultural Commissioner’s Office. Available: https://www.countyofglenn.net/sites/default/files/Ag_Commissioner/Glenn%20County%202016%20Crop%20Report.pdf.   Available: on SharePoint                   

Glenn County. 2016b. AP Agricultural Preserve Zone. Available: https://www.countyofglenn.net/govt/county-code/title-15/division-3/part-2/chapter-460. Available: on SharePoint                   

Glenn County. 2020a. County Data for Timberland Production Zones. County Assessor’s Office. 

Glenn County. 2020b. County Data for Agricultural Zoning. Planning & Community Development Services. 

Glenn County. 2020c. County Data for Williamson Act and FSZ Contracts. County Assessor’s Office. 

Glenn County. 2020d. County Data for Parcel Boundaries. County Assessor’s Office. Gray, A. B., and Pasternack, G. B. 2016. Colusa Basin Drainage Area Fluvial Sediments: Dynamics, Environmental Impacts and Recommendations for Future Monitoring of The Colusa Basin Suspended Sediment Project. SWAMP-MR-RB5-2016-0002. Prepared for Central Valley Regional Water Quality Control Board, Sacramento, CA. Available: https://www.waterboards.ca.gov/water_issues/programs/swamp/docs/reglrpts/r5_cbds_reg_mar2016.pdf.  Available: on SharePoint                 

Natural Resources Conservation Service. 2010. Important Farmlands Definitions and Criteria as Applied in California. U.S. Department of Agriculture. California Soils Technical Note CA-20. April 23, 2007, revised May 6, 2010. Available: https://efotg.sc.egov.usda.gov/references/public/CA/TN_Soils_CA20revised.pdf. Available: on SharePoint                  

Natural Resources Conservation Service. 2020. Web Soil Survey. Soil Survey Staff, Natural Resources Conservation Service, United States Department of Agriculture. Available: http://websoilsurvey.sc.egov.usda.gov/. Available: on SharePoint                 

Sharifi, H., R.J. Hijmans, J.E. Hill, and B.A. Linquist. 2018. Water and Air Temperature Impacts on Rice (Oryza sativa) Phenology. Paddy and Water Environment 16:467–476. Copyright protected. See introduction for more information

Sites Program Management Team. 2020. Colusa Basin Drain Hydraulic Modeling Final Technical Memorandum. August 28. Prepared by Chakri Malakpet, Jacobs. 

Sommer, T., B. Harrell, M. Nobriga, R. Brown, P. Moyle, W. Kimmerer, and L. Schemel. 2001. California's Yolo Bypass: Evidence that Flood Control Can Be Compatible with Fisheries, Wetlands, Wildlife, and Agriculture. Fisheries 26(8). Copyright protected. See introduction for more information

Tanner, K.C., L. Windham-Myers, J.A. Fleck, K.W. Tate, S.A. McCord, and B.A. Linquist. 2017. The Contribution of Rice Agriculture to Methylmercury in Surface Waters: A Review of Data from the Sacramento Valley, California. Journal of Environmental Quality 46:133–142. Available: on SharePoint                

USA Rice. 2020. Think Rice: How Rice Grown. Available: https://www.usarice.com/thinkrice/discover-us-rice/how-rice-grows.  Available: on SharePoint                

U.S. Department of Agriculture. 2017. 2017 Census of Agriculture - County Data. California. National Agricultural Statistics Service. Available: https://www.nass.usda.gov/Publications/AgCensus/2017/Full_Report/Volume_1,_Chapter_2_County_Level/California/st06_2_0001_0001.pdf. Available: on SharePoint                

U.S. Department of Agriculture. 2019. CropScape – Cropland Data Layer. National Agricultural Statistics Service. Available: https://nassgeodata.gmu.edu/CropScape/.  

U.S. Department of Agriculture. 2021. Farming and Farm Income. Economic Research Service. Available: https://www.ers.usda.gov/data-products/ag-and-food-statistics-charting-the-essentials/farming-and-farm-income/. Available: on SharePoint             

U.S. Forest Service. 2020. Administrative Forest Service Boundaries. Available: https://data.fs.usda.gov/geodata/edw/datasets.php. Available: on SharePoint            

Yolo County. 2017. Yolo County Williamson Act Eligibility Criteria. Available: http://yoloagenda.yolocounty.org:8085/docs/2017/BOS/20170110_1748/5494_5494_Williamson%20Act%20Eligibility%20Criteria%201-3-2017%20(CLEAN).pdf.  

Yolo County. 2020a. Industry Priorities in Yolo County. Available: https://www.yolocounty.org/government/general-government-departments/county-administrator/county-administrator-divisions/economic-development/industry-priorities-in-yolo-county.  Available: on SharePoint            

Yolo County. 2020b. Data Downloads: Open Data. Available: https://www.yolocounty.org/government/general-government-departments/innovation-and-technology-services/geographical-information-system/data-downloads. Available: on SharePoint           

Personal Communications

Davis, Brittany E. Environmental Program Manager. California Department of Water Resources. July 6, 2021—Email to John Spranza, Senior Ecologist/Regulatory Specialist, HDR, Sacramento, CA, and Mallory Bedwell, California Department of Water Resources. 

Johnson, Tim. President and CEO of California Rice Commission. Meeting on June 8, 2021, including Diana Roberts, Senior Environmental Planner, ICF. 

Kisko, Michael. Environmental Scientist. California Department of Conservation, Farmland Mapping and Monitoring Program, Sacramento, CA. October 2, 2020—Email to Diana Roberts, Senior Environmental Planner, ICF, San Jose, CA.

Linquist, Bruce. University of California Extension Service. Meeting on June 8, 2021, including Diana Roberts, Senior Environmental Planner, ICF.

California Data Exchange Center. 2016. San Luis Reservoir Storage Levels. https://cdec.water.ca.gov/dynamicapp/QueryDaily?s=SNL&end=2016-07-31.  Available: on SharePoint           

California Department of Fish and Wildlife. 2020. Sutter Bypass Wildlife Area. 3 pp, 2 maps. Available: https://www.wildlife.ca.gov/Lands/Places-to-Visit/Sutter-Bypass-WA.  Available: on SharePoint          

California Department of Fish and Wildlife. 2021a. Sacramento Bypass Wildlife Area. Available: https://wildlife.ca.gov/Lands/Places-to-Visit/Sacramento-Bypass-WA.  Available: on SharePoint          

California Department of Fish and Wildlife. 2021b. Colusa Bypass Wildlife Area. Available: https://wildlife.ca.gov/Lands/Places-to-Visit/Colusa-Bypass-WA. Available: on SharePoint          

California Department of Water Resources. 2004. Final Recreation Carrying Capacity (R8) Oroville Facilities P2100 Relicensing. https://cadwr.app.box.com/s/hy6iccr92gcxdyotaqfgg3r3zd66fe9b/file/893678160219  Available: on SharePoint             

California State Parks. 2016. San Luis Reservoir State Recreation Area. http://www.parks.ca.gov/?page_id=558. Available: on SharePoint            

National Wild and Scenic Rivers System. 2020. American River, Klamath River, and Trinity River information. http://www.rivers.gov/rivers/. Available: on SharePoint            

Rischbieter, D. 2001. Comparative Inventory of Recreation Facilities at California’s Largest Reservoirs, 2000. Department of Water Resources. Environmental Services Office. Copyright protected. See introduction for more information.

Sites Project Authority and U.S. Bureau of Reclamation. 2017. Draft Environmental Impact Report/ Environmental Impact Statement, Chapter 29 Public Services and Utilities. Draft. Prepared by Sites Project Authority and the U.S. Department of the Interior, Bureau of Reclamation, Mid-Pacific Region. Volume 1. Available: on SharePoint          

Stienstra, T. 2008. California Recreational Lakes and Rivers. 4th Edition. Moon Travel. Copyright protected. See introduction for more information.

U.S. Bureau of Reclamation. 2000. Record of Decision Trinity River mainstem fishery restoration final environmental impact statement/environmental impact report. U.S. Department of Interior, Washington D.C., Washington D.C. Available: https://www.trrp.net/library/document/?id=227. Available: on SharePoint          

U.S. Department of Agriculture. 2014. Management Guide Shasta and Trinity Units Whiskeytown-Shasta-Trinity National Recreation Area. Version 2.12.2014. https://www.fs.usda.gov/Internet/FSE_DOCUMENTS/stelprd3790610.pdf. Available: on SharePoint          

U.S. Fish and Wildlife Service. 2020. National Wildlife Refuge System. Available: https://www.fws.gov/refuges/. Available: on SharePoint       

California Energy Commission. 2020a. 2019 Total System Electric Generation. Last revised: 2020. Available: https://www.energy.ca.gov/data-reports/energy-almanac/california-electricity-data/2019-total-system-electric-generation. Available: on SharePoint        

California Energy Commission. 2020b. 2018 Total System Electric Generation. Last revised: 2020. Available: https://www.energy.ca.gov/data-reports/energy-almanac/california-electricity-data/2019-total-system-electric-generation/2018. Available: on SharePoint      

California Energy Commission. 2020c. Hydroelectric Power. Last revised: 2020. Available: https://www.energy.ca.gov/data-reports/california-power-generation-and-power-sources/hydroelectric-power. Available: on SharePoint      

California Energy Commission. 2020d. California Hydroelectric Statistics and Data. Last revised: 2020.

California Energy Commission. 2020e. Electricity Consumption by County. Available: http://www.ecdms.energy.ca.gov/elecbycounty.aspx.   Electric Generation Capacity and Energy. Available: https://www.energy.ca.gov/data-reports/energy-almanac/california-electricity-data/electric-generation-capacity-and-energy. Available: on SharePoint    

California Energy Commission. 2020f. Electricity Consumption by County. Available: http://www.ecdms.energy.ca.gov/elecbycounty.aspx.  Available: on SharePoint    

California Energy Commission. 2020g. 2019 California Annual Retail Fuel Outlet Report Results (CEC-A15) Energy Assessments Division 09-22-20. California Energy Commission, Supply Analysis Office. September 22, 2020.  

California Energy Commission. 2021. CEC-1304 Power Plant Owners Report as of April 29, 2020.  California Independent System Operator. 2020. CAISO 2020 Summer Loads and Resources Assessment. May 15, 2020. Available: on SharePoint    

County of Glenn 1993a. Glenn County General Plan Volume II. Natural Resources issue Paper. Prepared for Glenn County Board of Supervisors. Prepared by QUAD Consultants, Brow-Buntin Associates, Inc., Dowling Associates. 1993. Available: https://www.countyofglenn.net/sites/default/files/images/2%20Issue%20Papers%20Glenn%20County%20General%20Plan%20Vol.%20II%20Reduced%20Size.pdf.  Available: on SharePoint   

County of Glenn. 1993b. Glenn County General Plan, Energy Element. Prepared by Crawford Multari & Starr, 1993. Available: https://www.countyofglenn.net/sites/default/files/Planning/EnergyElement.pdf. Available: on SharePoint   

County of Glenn. 2020. Glenn County General Plan Update. Available: https://glenncounty.generalplan.org/.  Available: on SharePoint  

Holt. 2010. Tier 4 Emissions Regulations. Holt Caterpillar. Available: https://www.holtcat.com/Portals/0/Tier%204%20Emissions%20Info%20Page.pdf.  Available: on SharePoint  

National Oceanic and Atmospheric Administration. 2021. Current U.S. Drought Monitor Conditions for California. Available: https://www.drought.gov/states/california. Available: on SharePoint     

Power Engineering. 2011. Tier 4 Regulations Affect More than Engines. June 1, 2011. Available: https://www.power-eng.com/emissions/air-pollution-control-equipment-services/tier-4-regulations-affect-more-than-engines/#gref. Available: on SharePoint  

Sites Project Authority. 2020. Final Feasibility Level Basis of Design Report – HC Conveyance Facilities, Sites Reservoir Project. November 9, 2020.

Personal Communications

Garcia, Cary. California Energy Commission, Sacramento, CA. April 12, 2021—Email to Robert Lanza, Chemical Engineer Principal, ICF, Takoma Park, MD.

California Department of Transportation. Caltrans 2021. California Manual on Uniform Traffic Control Devices. March 2021. 

California Department of Water Resources. 2007. Management of the California State Water Project. Bulletin 132-06. Chapter 13, Recreation. December. 

California Department of Water Resources. 2008. Management of the California State Water Project. Bulletin 132-07. Chapter 13, Recreation. December. 

California Department of Water Resources. 2012. Management of the California State Water Project. Bulletin 132-08. Chapter 13, Recreation. June. Available: on SharePoint                             

Colusa County. 2012. Colusa County General Plan: Circulation Element. Adopted July 2012. Prepared by De Novo Planning Group. Available: on SharePoint                             

Colusa County Local Transportation Commission. 2018. 2018 Colusa County Regional Transportation Plan Update. April 2019. Available: on SharePoint                             

County of Glenn. 2020a. 2020 Glenn County Regional Transportation Plan. May 2020. Prepared by Green Dot Transportation Solutions. Available: on SharePoint                             

County of Glenn. 2020b. Glenn County General Plan Update: Existing Conditions Report. Final. Prepared by De Novo Planning Group. Available: on SharePoint                             

Dean’s AnglerNet.com. 2011. Fishing Lake Information.  

Dirksen, D., and J. Dirksen. 2003. Recreation Lakes of California. 14th Edition. Recreation Sales Publishing. Copyright protected. See introduction for more information.

Federal Highway Administration. 2017. Highway Functional Classification Concepts, Criteria, and Procedures. Updated June 2017. U.S. Department of Transportation. Federal Highway Administration, Office of Planning, Environment, and Reality. Available: https://www.fhwa.dot.gov/planning/processes/statewide/related/highway_functional_classifications/section03.cfm.  Available: on SharePoint                             

FishersNet.com. 2011. Recreation and Fishing Information. Available: http://www.fishersnet.com/fishmap.html. Available: on SharePoint                             

Fishsniffer.com. 2011. Fishing Information and Maps. Available: http://fishsniffer.com/index.php/maps/.  Available: on SharePoint                            

Governor’s Office of Planning and Research. 2018. Technical Advisory on Evaluating Transportation Impacts in CEQA. April 2018. Available: on SharePoint                            

Guthrie, R., P. Jukusky, and D. A. Penland. 1995. Red Bluff Diversion Dam Area Recreational Use Study. Revised 1996. California State University, Chico. Copyright protected. See introduction for more information.

Jacobs. 2021. Sites Reservoir Recreational Trips Methodology and VMT Summaries Technical Memorandum. March 2021. Copyright protected. See introduction for more information.

Maxwell School District. 2019. Local Control Accountability Plan and Annual Update Template. 

Maxwell Unified School District. 2016. Maxwell Unified School District Policies. Available: http://www.gamutonline.net/district/maxwell/DisplayPolicy/1039029/3. Available: on SharePoint                            

National Park Service. 2016. 2015 National Park Visitor Spending Effects. April. 

Rischbieter, D., and D. Elkins. 2000. Sites Reservoir Alternative North-of-Delta Offstream Storage Investigation. Appendix J. Recreation Requirements and Opportunities, Sites Reservoir Alternative. California Department of Water Resources, Division of Planning and Local Assistance, Northern District.

Sites Project Authority. 2017. WSIP Application: Benefit Calculation, Monetization, and Resiliency Tab. August. 

Stienstra, T. 2004. California Recreational Lakes and Rivers. Avalon Travel Publishing. Copyright protected. See introduction for more information.

Tehama County. 2007. Tehama County General Plan Update 2005–2025. Draft 2007. Prepared by PMC. 

Tehama County Transportation Commission. 2019. 2019 Tehama County Regional Transportation Plan. Amended April 2020. Prepared by Green Dot Transportation Solutions. Available: on SharePoint                           

Transportation Research Board. 2010. Highway Capacity Manual 2010. December 2010. Transportation Research Board. National Research Council, Washington. D.C. Copyright protected. See introduction for more information.

U.S. Census Bureau. 2020. Topologically Integrated Geographic Encoding and Referencing (TIGER) Applications. December 2020. U.S. Census Bureau. U.S. Department of Commerce, Geography Division. Available: https://tigerweb.geo.census.gov/tigerweb/. 

U.S. Forest Service. 2011. Whiskeytown Shasta Trinity National Recreation Area. Available: https://www.fs.usda.gov/main/stnf/maps-pubs.  Available: on SharePoint                           

Yolo County Transportation Advisory Committee. 2013. County of Yolo Bicycle Transportation Plan. March 2013. Available: on SharePoint                           

Personal Communications

Unsinn, Alicia. Senior District Ranger, U.S. Army Corps of Engineers. March 24, 2017—Personal communication with Jacqueline Todak, CH2M HILL Engineers, Inc.

California Department of Transportation. 2020. Transportation and Construction Vibration Guidance Manual. April. Sacramento, CA. Available: on SharePoint                           

County of Glenn. 2008. Willows-Glenn County Airport Master Plan. Adopted August 19. Available: https://www.countyofglenn.net/sites/default/files/Airports/WLWChp5.pdf.  Available: on SharePoint                           

Cowan, J. P. 1994. Handbook of Environmental Acoustics. New York, NY: Van Nostrand Reinhold. Copyright protected. See introduction for more information.

Federal Transit Administration. 2018. Transit Noise and Vibration Impact Assessment. FTA Report No. 0123. Available: https://www.transit.dot.gov/sites/fta.dot.gov/files/docs/research-innovation/118131/transit-noise-and-vibration-impact-assessment-manual-fta-report-no-0123_0.pdf.  Available: on SharePoint                           

Google Earth. 2020. Glenn County, California. Lat 39.447882, Lon -122.011904, Eye alt 45 miles. Image Landsat/Copernicus. V 7.3.3.7786. Updated: July 21, 2020. Available: http://www.earth.google.com. Available: on SharePoint                           

Hoover, R. M., and R. H. Keith. 2000. Noise Control for Buildings, Manufacturing Plants, Equipment and Products. Houston, TX: Hoover & Keith, Inc. 

Teachout, E. and T. Cushman. 2005. Use of a Pile Driver Shroud to Minimize Disturbance to Wildlife. Proceedings of Transportation Research Board Noise and Vibration Conference, Seattle, Washington, July 20, 2005. Available: http://www.adc40.org/presentations/summer2005/26_Teachout_noiseshroud.pdf  Available: on SharePoint                           

Washington Department of Transportation. 2018. Biological Assessment Preparation Advanced Training Manual. Version 1-2018. Available: https://wsdot.wa.gov/environment/technical/fish-wildlife/esa-efh/BA-preparation-manual. 

California Air Pollution Control Officers Association. n.d. Health Effects. 

California Air Resources Board. No Date a. Carbon Monoxide and Health. Available: https://ww2.arb.ca.gov/resources/carbon-monoxide-and-health. Available: on SharePoint                           

California Air Resources Board. No Date b. Nitrogen Dioxide and Health. Available: https://ww2.arb.ca.gov/resources/nitrogen-dioxide-and-health.  Available: on SharePoint                          

California Air Resources Board. No Date c. Sulfur Dioxide and Health. Available: https://ww2.arb.ca.gov/resources/sulfur-dioxide-and-health.  Available: on SharePoint                          

California Air Resources Board. 2000. Risk Reduction Plan to Reduce Particulate Matter Emissions from Diesel-Fueled Engines and Vehicles. Available: https://ww2.arb.ca.gov/sites/default/files/classic//diesel/documents/rrpfinal.pdf. October. Available: on SharePoint                          

California Air Resources Board. 2005. Air Quality and Land Use Handbook: A Community Health Perspective. April. 

California Air Resources Board. 2007. Emission Inventory Criteria and Guidelines for the Air Toxics “Hot Spots” Program. https://ww3.arb.ca.gov/ab2588/final/reg.pdf. 

California Air Resources Board. 2014. Appendix J: Recreational Watercraft Emissions Inventory Methodology. November.  

California Air Resources Board. 2019. Maps and Tables of Area Designations for State and National Ambient Air Quality Standards. 

California Air Resources Board. 2021a. iADAM Air Quality Data Statistics. Available: https://www.arb.ca.gov/adam/index.html.  Available: on SharePoint                          

California Air Resources Board. 2021b. Revised Draft 2020 Mobile Source Strategy. Available: https://ww2.arb.ca.gov/sites/default/files/2021-04/Revised_Draft_2020_Mobile_Source_Strategy.pdf.  April 23. Available: on SharePoint                          

California Air Resources Board. 2021c. March 2021 Public Workshop for the Development of the California Recreational Marine Vessel Emissions Inventory. Available: https://ww2.arb.ca.gov/our-work/programs/mobile-source-emissions-inventory/msei-meetings-workshops.  March 30. Available: on SharePoint                          

California Department of Conservation. 2000. A General Location Guide for Ultramafic Rocks in California—Areas More Likely to Contain Naturally Occurring Asbestos. August. Division of Mines and Geology. Sacramento, CA. Available: https://ww2.arb.ca.gov/sites/default/files/classic/toxics/asbestos/ofr_2000-019.pdf. Available: on SharePoint                          

California Department of Public Health. 2020. Valley Fever Cases Reach Record High in California in 2019. Available: https://yubanet.com/california/valley-fever-cases-reach-record-high-in-california-in-2019/. Available: on SharePoint                        

California Office of Environmental Health Hazard Assessment. 2015. Air Toxics Hot Spots Program Guidance Manual. February. Available: https://oehha.ca.gov/media/downloads/crnr/2015guidancemanual.pdf. Available: on SharePoint                         

Centers for Disease Control. 2020. Valley Fever Maps. Available: https://www.cdc.gov/fungal/diseases/coccidioidomycosis/maps.html.  Available: on SharePoint                       

ESRI. 2021. Areas with Potential for Naturally Occurring Asbestos. Available: https://www.arcgis.com/apps/webappviewer/index.html?id=da4b648958844134adc25ff002dbea1c. Available: on SharePoint                       

Google Earth 2020. Glenn County, California. Lat 39.447882, Lon -122.011904, Eye alt 45 miles. Image Landsat/Copernicus. V 7.3.3.7786. Updated: July 21, 2020. Available: http://www.earth.google.com. Available: on SharePoint                       

ICF. Construction Modeling Output Files. July 2021. Available: on SharePoint                       

International Agency for Research on Cancer (2012). Press Release: Diesel Engine Exhaust Carcinogen. June 12. Available: https://www.iarc.fr/wp-content/uploads/2018/07/pr213_E.pdf.   

Jacobs. 2021. Sites Reservoir Recreational Trips Methodology and VMT Summaries. April 5. Copyright protected. See introduction for more information.   

San Joaquin Valley Air Pollution Control District. 2019. APR 1925 Policy for District Rule 2201 AAQA Modeling. Available: http://www.valleyair.org/policies_per/Policies/APR-1925.pdf. Available: on SharePoint                       

Sites Project Authority. 2017. Water Storage Investment Program Application. Table 1. 

TCAPCD. 2015. Air Quality Planning and Permitting Handbook. Available: http://tehcoapcd.net/PDF/CEQA%20Handbook%20Mar%202015%20Final.pdf. Available: on SharePoint                      

U.S. Coast Guard. 2012. National Recreational Boating Survey. Last revised: April 12, 2021. Available: https://cdn.ymaws.com/aca.site-ym.com/resource/resmgr/SPP-documents/Boating_Survey-USCG_2012.pdf.  Available: on SharePoint                     

U.S. Department of Transportation. 2015. Fact Sheet: Diesel-powered Passenger Cars and Light Trucks. Available: https://www.bts.dot.gov/sites/bts.dot.gov/files/legacy/DieselFactSheet.pdf. Available: on SharePoint                       

U.S. Environmental Protection Agency. 2016. Health Effects of Ozone in the General Population. Last updated September 12. Available: https://www.epa.gov/ozone-pollution-and-your-patients-health/health-effects-ozone-general-population. Available: on SharePoint                      

U.S. Environmental Protection Agency. 2018. Guidance on Significant Impact Levels for Ozone and Fine Particulates in the Prevention of Significant Deterioration Permitting Program. Available: https://www.epa.gov/sites/default/files/2018-04/documents/sils_guidance_2018.pdf. Available: on SharePoint                      

U.S. Environmental Protection Agency. 2021a. Health Effects of Ozone Pollution. Last updated July 30. Available: https://www.epa.gov/ground-level-ozone-pollution/health-effects-ozone-pollution.  Available: on SharePoint                     

U.S. Environmental Protection Agency 2021b. Health and Environmental Effects of Particulate Matter (PM). Last updated May 26. Available: https://www.epa.gov/pm-pollution/health-and-environmental-effects-particulate-matter-pm. Available: on SharePoint                     

U.S. Environmental Protection Agency 2021c. Learn About Asbestos. Last updated February 23. Available: https://www.epa.gov/asbestos/learn-about-asbestos#effects.  Available: on SharePoint                    

U.S. Environmental Protection Agency. 2021d. Green Book National Area and County-Level Multi-Pollutant Information. Available: https://www.epa.gov/green-book/green-book-national-area-and-county-level-multi-pollutant-information. Available: on SharePoint                    

U.S. Environmental Protection Agency. 2021e. AP-42: Compilation of Air Emissions Factors. Last revised: January 20, 2021. Available: https://www.epa.gov/air-emissions-factors-and-quantification/ap-42-compilation-air-emissions-factors. Available: on SharePoint                    

U.S. Environmental Protection Agency. 2021f. Basic Information about NO2. Last revised: June 7, 2021. Available: https://www.epa.gov/no2-pollution/basic-information-about-no2#Effects. Available: on SharePoint                    

U.S. Geological Survey. 2000. Operational Guidelines (version 1.0) for Geological Fieldwork in Areas Endemic for Coccidioidomycosis (Valley Fever). Available: https://pubs.usgs.gov/of/2000/0348/pdf/of00-348.pdf. Available: on SharePoint                   

Yolo-Solano Air Quality Management District. 2007. Handbook for Assessing and Mitigating Air Quality Impacts. July 11. Available: http://www.ysaqmd.org/wp-content/uploads/Planning/CEQAHandbook2007.pdf.  Available: on SharePoint                 

Personal Communications

Ledbetter, Ian. Environmental Program Manager. Glenn County Air Pollution Control District, Glenn County, CA. October 9, 2020—Phone call to Ian Ledbetter. 

Ryan, Casey. Air Pollution Standards Officer III. Colusa County Air Pollution Control District, Colusa County, CA. October 14, 2020—Phone call to Casey Ryan.

CALFED. 2000. CALFED Bay-Delta Program Record of Decision. August. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/exhibit4/docs/Public_Draft_BDCP_EIR-EIS_Appendix_3A_-_Attachment_1.sflb.pdf 

California Natural Resources Agency, California Environmental Protection Agency, and California Department of Food and Agriculture. 2020. 2020 Water Resilience Portfolio. July. Available: https://waterresilience.ca.gov/wp-content/uploads/2020/07/Final_California-Water-Resilience-Portfolio-2020_ADA3_v2_ay11-opt.pdf

Sites Project Authority. 2020. Value Planning Report. Available: https://sitesproject.org/wp-content/uploads/2020/04/INT-REP-Value-Planning-Appraisal-Report-FinalV2Compressed.pdf 

Sites Project Authority and U.S. Department of the Interior, Bureau of Reclamation. 2017. Sites Reservoir Project Draft Environmental Impact Report/Environmental Impact Statement. August 2017. Available: https://sitesproject.org/environmental-review/draft-environmental-impact-report-environmental-impact-statement/ 

U.S. Department of the Interior, Bureau of Reclamation. 2020. North-of-the-Delta Offstream Storage Investigation Feasibility Report. July. Available: usbr.gov/mp/nodos/docs/final-fr/main-body-es-sites-feasibility-report-508-1-28-21.pdf

CALFED. 2000. CALFED Bay-Delta Program Record of Decision. August. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/exhibit4/docs/Public_Draft_BDCP_EIR-EIS_Appendix_3A_-_Attachment_1.sflb.pdf 

California Natural Resources Agency, California Environmental Protection Agency, and California Department of Food and Agriculture. 2020. 2020 Water Resilience Portfolio. July. Available: https://waterresilience.ca.gov/wp-content/uploads/2020/07/Final_California-Water-Resilience-Portfolio-2020_ADA3_v2_ay11-opt.pdf

Sites Project Authority. 2020. Value Planning Report. Available: https://sitesproject.org/wp-content/uploads/2020/04/INT-REP-Value-Planning-Appraisal-Report-FinalV2Compressed.pdf 

Sites Project Authority and U.S. Department of the Interior, Bureau of Reclamation. 2017. Sites Reservoir Project Draft Environmental Impact Report/Environmental Impact Statement. August 2017. Available: https://sitesproject.org/environmental-review/draft-environmental-impact-report-environmental-impact-statement/ 

U.S. Department of the Interior, Bureau of Reclamation. 2020. North-of-the-Delta Offstream Storage Investigation Feasibility Report. July. Available: usbr.gov/mp/nodos/docs/final-fr/main-body-es-sites-feasibility-report-508-1-28-21.pdf

CALFED. 2000. CALFED Bay-Delta Program Record of Decision. August. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/exhibit4/docs/Public_Draft_BDCP_EIR-EIS_Appendix_3A_-_Attachment_1.sflb.pdf 

California Natural Resources Agency, California Environmental Protection Agency, and California Department of Food and Agriculture. 2020. 2020 Water Resilience Portfolio. July. Available: https://waterresilience.ca.gov/wp-content/uploads/2020/07/Final_California-Water-Resilience-Portfolio-2020_ADA3_v2_ay11-opt.pdf

Sites Project Authority. 2020. Value Planning Report. Available: https://sitesproject.org/wp-content/uploads/2020/04/INT-REP-Value-Planning-Appraisal-Report-FinalV2Compressed.pdf 

Sites Project Authority and U.S. Department of the Interior, Bureau of Reclamation. 2017. Sites Reservoir Project Draft Environmental Impact Report/Environmental Impact Statement. August 2017. Available: https://sitesproject.org/environmental-review/draft-environmental-impact-report-environmental-impact-statement/ 

U.S. Department of the Interior, Bureau of Reclamation. 2020. North-of-the-Delta Offstream Storage Investigation Feasibility Report. July. Available: usbr.gov/mp/nodos/docs/final-fr/main-body-es-sites-feasibility-report-508-1-28-21.pdf

CALFED. 2000. CALFED Bay-Delta Program Record of Decision. August. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/exhibit4/docs/Public_Draft_BDCP_EIR-EIS_Appendix_3A_-_Attachment_1.sflb.pdf 

California Natural Resources Agency, California Environmental Protection Agency, and California Department of Food and Agriculture. 2020. 2020 Water Resilience Portfolio. July. Available: https://waterresilience.ca.gov/wp-content/uploads/2020/07/Final_California-Water-Resilience-Portfolio-2020_ADA3_v2_ay11-opt.pdf

Sites Project Authority. 2020. Value Planning Report. Available: https://sitesproject.org/wp-content/uploads/2020/04/INT-REP-Value-Planning-Appraisal-Report-FinalV2Compressed.pdf 

Sites Project Authority and U.S. Department of the Interior, Bureau of Reclamation. 2017. Sites Reservoir Project Draft Environmental Impact Report/Environmental Impact Statement. August 2017. Available: https://sitesproject.org/environmental-review/draft-environmental-impact-report-environmental-impact-statement/ 

U.S. Department of the Interior, Bureau of Reclamation. 2020. North-of-the-Delta Offstream Storage Investigation Feasibility Report. July. Available: usbr.gov/mp/nodos/docs/final-fr/main-body-es-sites-feasibility-report-508-1-28-21.pdf

CALFED. 2000. CALFED Bay-Delta Program Record of Decision. August. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/exhibit4/docs/Public_Draft_BDCP_EIR-EIS_Appendix_3A_-_Attachment_1.sflb.pdf 

California Natural Resources Agency, California Environmental Protection Agency, and California Department of Food and Agriculture. 2020. 2020 Water Resilience Portfolio. July. Available: https://waterresilience.ca.gov/wp-content/uploads/2020/07/Final_California-Water-Resilience-Portfolio-2020_ADA3_v2_ay11-opt.pdf

Sites Project Authority. 2020. Value Planning Report. Available: https://sitesproject.org/wp-content/uploads/2020/04/INT-REP-Value-Planning-Appraisal-Report-FinalV2Compressed.pdf 

Sites Project Authority and U.S. Department of the Interior, Bureau of Reclamation. 2017. Sites Reservoir Project Draft Environmental Impact Report/Environmental Impact Statement. August 2017. Available: https://sitesproject.org/environmental-review/draft-environmental-impact-report-environmental-impact-statement/ 

U.S. Department of the Interior, Bureau of Reclamation. 2020. North-of-the-Delta Offstream Storage Investigation Feasibility Report. July. Available: usbr.gov/mp/nodos/docs/final-fr/main-body-es-sites-feasibility-report-508-1-28-21.pdf

CALFED. 2000. CALFED Bay-Delta Program Record of Decision. August. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/exhibit4/docs/Public_Draft_BDCP_EIR-EIS_Appendix_3A_-_Attachment_1.sflb.pdf 

California Natural Resources Agency, California Environmental Protection Agency, and California Department of Food and Agriculture. 2020. 2020 Water Resilience Portfolio. July. Available: https://waterresilience.ca.gov/wp-content/uploads/2020/07/Final_California-Water-Resilience-Portfolio-2020_ADA3_v2_ay11-opt.pdf

Sites Project Authority. 2020. Value Planning Report. Available: https://sitesproject.org/wp-content/uploads/2020/04/INT-REP-Value-Planning-Appraisal-Report-FinalV2Compressed.pdf 

Sites Project Authority and U.S. Department of the Interior, Bureau of Reclamation. 2017. Sites Reservoir Project Draft Environmental Impact Report/Environmental Impact Statement. August 2017. Available: https://sitesproject.org/environmental-review/draft-environmental-impact-report-environmental-impact-statement/ 

U.S. Department of the Interior, Bureau of Reclamation. 2020. North-of-the-Delta Offstream Storage Investigation Feasibility Report. July. Available: usbr.gov/mp/nodos/docs/final-fr/main-body-es-sites-feasibility-report-508-1-28-21.pdf

CALFED. 2000. CALFED Bay-Delta Program Record of Decision. August. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/exhibit4/docs/Public_Draft_BDCP_EIR-EIS_Appendix_3A_-_Attachment_1.sflb.pdf 

California Natural Resources Agency, California Environmental Protection Agency, and California Department of Food and Agriculture. 2020. 2020 Water Resilience Portfolio. July. Available: https://waterresilience.ca.gov/wp-content/uploads/2020/07/Final_California-Water-Resilience-Portfolio-2020_ADA3_v2_ay11-opt.pdf

Sites Project Authority. 2020. Value Planning Report. Available: https://sitesproject.org/wp-content/uploads/2020/04/INT-REP-Value-Planning-Appraisal-Report-FinalV2Compressed.pdf 

Sites Project Authority and U.S. Department of the Interior, Bureau of Reclamation. 2017. Sites Reservoir Project Draft Environmental Impact Report/Environmental Impact Statement. August 2017. Available: https://sitesproject.org/environmental-review/draft-environmental-impact-report-environmental-impact-statement/ 

U.S. Department of the Interior, Bureau of Reclamation. 2020. North-of-the-Delta Offstream Storage Investigation Feasibility Report. July. Available: usbr.gov/mp/nodos/docs/final-fr/main-body-es-sites-feasibility-report-508-1-28-21.pdf

CALFED. 2000. CALFED Bay-Delta Program Record of Decision. August. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/exhibit4/docs/Public_Draft_BDCP_EIR-EIS_Appendix_3A_-_Attachment_1.sflb.pdf 

California Natural Resources Agency, California Environmental Protection Agency, and California Department of Food and Agriculture. 2020. 2020 Water Resilience Portfolio. July. Available: https://waterresilience.ca.gov/wp-content/uploads/2020/07/Final_California-Water-Resilience-Portfolio-2020_ADA3_v2_ay11-opt.pdf

Sites Project Authority. 2020. Value Planning Report. Available: https://sitesproject.org/wp-content/uploads/2020/04/INT-REP-Value-Planning-Appraisal-Report-FinalV2Compressed.pdf 

Sites Project Authority and U.S. Department of the Interior, Bureau of Reclamation. 2017. Sites Reservoir Project Draft Environmental Impact Report/Environmental Impact Statement. August 2017. Available: https://sitesproject.org/environmental-review/draft-environmental-impact-report-environmental-impact-statement/ 

U.S. Department of the Interior, Bureau of Reclamation. 2020. North-of-the-Delta Offstream Storage Investigation Feasibility Report. July. Available: usbr.gov/mp/nodos/docs/final-fr/main-body-es-sites-feasibility-report-508-1-28-21.pdf

CALFED. 2000. CALFED Bay-Delta Program Record of Decision. August. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/exhibit4/docs/Public_Draft_BDCP_EIR-EIS_Appendix_3A_-_Attachment_1.sflb.pdf 

California Natural Resources Agency, California Environmental Protection Agency, and California Department of Food and Agriculture. 2020. 2020 Water Resilience Portfolio. July. Available: https://waterresilience.ca.gov/wp-content/uploads/2020/07/Final_California-Water-Resilience-Portfolio-2020_ADA3_v2_ay11-opt.pdf

Sites Project Authority. 2020. Value Planning Report. Available: https://sitesproject.org/wp-content/uploads/2020/04/INT-REP-Value-Planning-Appraisal-Report-FinalV2Compressed.pdf 

Sites Project Authority and U.S. Department of the Interior, Bureau of Reclamation. 2017. Sites Reservoir Project Draft Environmental Impact Report/Environmental Impact Statement. August 2017. Available: https://sitesproject.org/environmental-review/draft-environmental-impact-report-environmental-impact-statement/ 

U.S. Department of the Interior, Bureau of Reclamation. 2020. North-of-the-Delta Offstream Storage Investigation Feasibility Report. July. Available: usbr.gov/mp/nodos/docs/final-fr/main-body-es-sites-feasibility-report-508-1-28-21.pdf

CALFED. 2000. CALFED Bay-Delta Program Record of Decision. August. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/exhibit4/docs/Public_Draft_BDCP_EIR-EIS_Appendix_3A_-_Attachment_1.sflb.pdf 

California Natural Resources Agency, California Environmental Protection Agency, and California Department of Food and Agriculture. 2020. 2020 Water Resilience Portfolio. July. Available: https://waterresilience.ca.gov/wp-content/uploads/2020/07/Final_California-Water-Resilience-Portfolio-2020_ADA3_v2_ay11-opt.pdf

Sites Project Authority. 2020. Value Planning Report. Available: https://sitesproject.org/wp-content/uploads/2020/04/INT-REP-Value-Planning-Appraisal-Report-FinalV2Compressed.pdf 

Sites Project Authority and U.S. Department of the Interior, Bureau of Reclamation. 2017. Sites Reservoir Project Draft Environmental Impact Report/Environmental Impact Statement. August 2017. Available: https://sitesproject.org/environmental-review/draft-environmental-impact-report-environmental-impact-statement/ 

U.S. Department of the Interior, Bureau of Reclamation. 2020. North-of-the-Delta Offstream Storage Investigation Feasibility Report. July. Available: usbr.gov/mp/nodos/docs/final-fr/main-body-es-sites-feasibility-report-508-1-28-21.pdf

CALFED. 2000. CALFED Bay-Delta Program Record of Decision. August. Available: https://www.waterboards.ca.gov/waterrights/water_issues/programs/bay_delta/california_waterfix/exhibits/exhibit4/docs/Public_Draft_BDCP_EIR-EIS_Appendix_3A_-_Attachment_1.sflb.pdf 

California Natural Resources Agency, California Environmental Protection Agency, and California Department of Food and Agriculture. 2020. 2020 Water Resilience Portfolio. July. Available: https://waterresilience.ca.gov/wp-content/uploads/2020/07/Final_California-Water-Resilience-Portfolio-2020_ADA3_v2_ay11-opt.pdf

Sites Project Authority. 2020. Value Planning Report. Available: https://sitesproject.org/wp-content/uploads/2020/04/INT-REP-Value-Planning-Appraisal-Report-FinalV2Compressed.pdf 

Sites Project Authority and U.S. Department of the Interior, Bureau of Reclamation. 2017. Sites Reservoir Project Draft Environmental Impact Report/Environmental Impact Statement. August 2017. Available: https://sitesproject.org/environmental-review/draft-environmental-impact-report-environmental-impact-statement/ 

U.S. Department of the Interior, Bureau of Reclamation. 2020. North-of-the-Delta Offstream Storage Investigation Feasibility Report. July. Available: usbr.gov/mp/nodos/docs/final-fr/main-body-es-sites-feasibility-report-508-1-28-21.pdf